Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0013599

Physical Location & Seq

Genomic Coordinates Forward (+)

24640328 .. 24640738

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1165300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGAATAGCTTGAATAAAATAAACCTTATGGCTCCTGGAACACGTGGTTTGCGCAAGAATCTGGAGAAAACATTGGTGACTTCTTCAATGTCAGCTGCAGCAATCAATAGAAGAGACCTACATAGGTGGACTACTTTCCATAGAGCTTGTTTCAAAGGGAAGATAAAAGTCATTCGAACGCTGCTTGAAAAGGGTTTGGATATGGATGCTAAAGATGAGGATGGACACACCGCGTTGCACTGTGCAGCGGAGTCGGGTCATGCGGATGTGATTGAGATGTTTATAAAGAAAAGAGTTGATGCTGAAGCTCGAACTAACAAAGGTGTGACTGCACTGCATATTGCTGAGTCTTTGCACTACGTTGGGATTACTAGGATACTTATTCATAGAGATGCAACAAAAAAACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002262 GO:0002376 GO:0002520 GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005856 GO:0005886 GO:0005938 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006887 GO:0006888 GO:0006996 GO:0007010 GO:0007163 GO:0007275 GO:0008092 GO:0008093 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010638 GO:0012505 GO:0014731 GO:0015672 GO:0016020 GO:0016043 GO:0016192 GO:0016323 GO:0016528 GO:0016529 GO:0018130 GO:0019438 GO:0019899 GO:0030011 GO:0030016 GO:0030017 GO:0030018 GO:0030097 GO:0030099 GO:0030154 GO:0030218 GO:0030424 GO:0030507 GO:0030673 GO:0030674 GO:0030863 GO:0031252 GO:0031253 GO:0031256 GO:0031430 GO:0031672 GO:0031674 GO:0032501 GO:0032502 GO:0032589 GO:0032940 GO:0033013 GO:0033014 GO:0033036 GO:0033043 GO:0033267 GO:0034101 GO:0034613 GO:0034641 GO:0035088 GO:0035090 GO:0042383 GO:0042592 GO:0042995 GO:0043005 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043292 GO:0044237 GO:0044249 GO:0044271 GO:0044304 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044448 GO:0044449 GO:0044456 GO:0044459 GO:0044463 GO:0044464 GO:0045197 GO:0045199 GO:0045202 GO:0045211 GO:0046483 GO:0046903 GO:0046907 GO:0048193 GO:0048468 GO:0048513 GO:0048518 GO:0048522 GO:0048534 GO:0048731 GO:0048821 GO:0048856 GO:0048869 GO:0048872 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051117 GO:0051128 GO:0051130 GO:0051179 GO:0051186 GO:0051188 GO:0051234 GO:0051641 GO:0051649 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0060090 GO:0061245 GO:0061515 GO:0065007 GO:0065008 GO:0070727 GO:0071704 GO:0071840 GO:0071944 GO:0072657 GO:0072659 GO:0097060 GO:0097458 GO:0098590 GO:0098771 GO:0098794 GO:0099080 GO:0099081 GO:0099512 GO:0099568 GO:0120025 GO:0120038 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1990778

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5 Motile_Sperm

Protein Analysis

137

Amino Acids

15.24

Weight (kDa)

9.89

Isoelectric Point (pI)

39.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	46 - 133	1.3e-16	Ankyrin repeats (3 copies)
Ank_4	PF13637	47 - 95	4e-13	Ankyrin repeats (many copies)
Ank_5	PF13857	61 - 115	3.9e-09	Ankyrin repeats (many copies)
Ank	PF00023	74 - 106	1.1e-06	Ankyrin repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013599)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28430
malus_domestica	MD03G1254100.v1.1 MD08G1160600.v1.1 MD12G1008200.v1.1 MD12G1165300.v1.1 MD14G1005600.v1.1
prunus_persica	Prupe.7G009400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0496481
rosa_laevigata	RLG00000022523
rosa_multiflora	Rmu_co8439577.1_g000001 Rmu_sc0001127.1_g000020
rosa_roxburghii	Rroxscaffold_6G00389080
rosa_rugosa	Rorug03G0283200
rosa_samantha	Rh3AG329200 Rh3BG365000 Rh3CG362300 Rh3DG365300
rosa_wichuraiana	Rw3G028800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	284
Acc16I	TGCGCA	1 cut(s)	53
AccII	CGCG	1 cut(s)	233
AciI	CCGC	3 cut(s)	231, 248, 263
AcuI	CTGAAG	1 cut(s)	324
AcvI	CACGTG	1 cut(s)	44
AflIII	ACRYGT	1 cut(s)	41
AgsI	TTSAA	4 cut(s)	13, 87, 154, 188
AjnI	CCWGG	1 cut(s)	34
AluBI	AGCT	4 cut(s)	9, 95, 146, 308
AluI	AGCT	4 cut(s)	9, 95, 146, 308
Alw26I	GTCTC	1 cut(s)	108
ApeKI	GCWGC	4 cut(s)	95, 98, 181, 245
AspLEI	GCGC	1 cut(s)	54
AsuHPI	GGTGA	1 cut(s)	88
AsuII	TTCGAA	1 cut(s)	175
BbrPI	CACGTG	1 cut(s)	44
BbvI	GCAGC	4 cut(s)	82, 110, 168, 257
BccI	CCATC	1 cut(s)	215
BcgI	CGANNNNNNTGC	2 cut(s)	234, 268
BciT130I	CCWGG	1 cut(s)	36
BciVI	GTATCC	1 cut(s)	369
BcoDI	GTCTC	1 cut(s)	108
BfaI	CTAG	1 cut(s)	372
BfmI	CTRYAG	1 cut(s)	96
BfuI	GTATCC	1 cut(s)	369
BisI	GCNGC	4 cut(s)	96, 99, 182, 246
BlsI	GCNGC	4 cut(s)	97, 100, 183, 247
Bme1390I	CCNGG	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	33
BmrFI	CCNGG	1 cut(s)	36
BmsI	GCATC	3 cut(s)	196, 289, 382
BpmI	CTGGAG	1 cut(s)	83
Bpu14I	TTCGAA	1 cut(s)	175
BsaAI	YACGTR	1 cut(s)	44
BsaI	GGTCTC	1 cut(s)	108
BseBI	CCWGG	1 cut(s)	36
BseGI	GGATG	3 cut(s)	211, 226, 271
BseMII	CTCAG	1 cut(s)	336
BseXI	GCAGC	4 cut(s)	82, 110, 168, 257
BsgI	GTGCAG	2 cut(s)	264, 315
Bsh1236I	CGCG	1 cut(s)	233
BsmAI	GTCTC	1 cut(s)	108
Bso31I	GGTCTC	1 cut(s)	108
Bsp119I	TTCGAA	1 cut(s)	175
BspACI	CCGC	3 cut(s)	231, 248, 263
BspCNI	CTCAG	1 cut(s)	337
BspFNI	CGCG	1 cut(s)	233
BspLI	GGNNCC	1 cut(s)	33
BspMAI	CTGCAG	1 cut(s)	100
BspT104I	TTCGAA	1 cut(s)	175
BspTNI	GGTCTC	1 cut(s)	108
Bst2UI	CCWGG	1 cut(s)	36
Bst4CI	ACNGT	1 cut(s)	242
Bst6I	CTCTTC	1 cut(s)	106
BstBAI	YACGTR	1 cut(s)	44
BstBI	TTCGAA	1 cut(s)	175
BstDEI	CTNAG	1 cut(s)	345
BstF5I	GGATG	3 cut(s)	211, 226, 271
BstFNI	CGCG	1 cut(s)	233
BstHHI	GCGC	1 cut(s)	54
BstMAI	GTCTC	1 cut(s)	108
BstNI	CCWGG	1 cut(s)	36
BstSCI	CCNGG	1 cut(s)	34
BstSFI	CTRYAG	1 cut(s)	96
BstUI	CGCG	1 cut(s)	233
BstV1I	GCAGC	4 cut(s)	82, 110, 168, 257
BsuI	GTATCC	1 cut(s)	369
BtsCI	GGATG	3 cut(s)	211, 226, 271
BtsI	GCAGTG	1 cut(s)	332
BtsIMutI	CAGTG	2 cut(s)	238, 332
CfoI	GCGC	1 cut(s)	54
CviAII	CATG	1 cut(s)	260
CviJI	RGCY	5 cut(s)	9, 32, 95, 146, 308
CviKI_1	RGCY	5 cut(s)	9, 32, 95, 146, 308
DdeI	CTNAG	1 cut(s)	345
Eam1104I	CTCTTC	1 cut(s)	106
EarI	CTCTTC	1 cut(s)	106
Eco31I	GGTCTC	1 cut(s)	108
Eco57I	CTGAAG	1 cut(s)	324
Eco72I	CACGTG	1 cut(s)	44
EcoRII	CCWGG	1 cut(s)	34
FaeI	CATG	1 cut(s)	263
FaiI	YATR	8 cut(s)	29, 123, 141, 203, 261, 284, 339, 387
FatI	CATG	1 cut(s)	259
Fnu4HI	GCNGC	4 cut(s)	96, 99, 182, 246
FokI	GGATG	3 cut(s)	218, 233, 278
Fsp4HI	GCNGC	4 cut(s)	96, 99, 182, 246
FspBI	CTAG	1 cut(s)	372
FspI	TGCGCA	1 cut(s)	53
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	4 cut(s)	96, 99, 182, 246
GsuI	CTGGAG	1 cut(s)	83
HhaI	GCGC	1 cut(s)	54
Hin1II	CATG	1 cut(s)	263
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HinfI	GANTC	3 cut(s)	58, 251, 347
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	1 cut(s)	129
Hpy188III	TCNNGA	1 cut(s)	62
Hpy8I	GTNNAC	1 cut(s)	129
HpyCH4III	ACNGT	1 cut(s)	242
HpyCH4IV	ACGT	2 cut(s)	43, 360
HpyCH4V	TGCA	7 cut(s)	98, 238, 245, 332, 337, 355, 395
HpyF3I	CTNAG	1 cut(s)	345
HpySE526I	ACGT	2 cut(s)	43, 360
Hsp92II	CATG	1 cut(s)	263
HspAI	GCGC	1 cut(s)	52
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	3 cut(s)	21, 47, 48
Lsp1109I	GCAGC	4 cut(s)	82, 110, 168, 257
LweI	GCATC	3 cut(s)	196, 289, 382
MaeI	CTAG	1 cut(s)	372
MaeII	ACGT	2 cut(s)	43, 360
MaeIII	GTNAC	2 cut(s)	76, 325
MboII	GAAGA	3 cut(s)	75, 123, 172
MlyI	GAGTC	2 cut(s)	260, 356
MnlI	CCTC	1 cut(s)	211
MslI	CAYNNNNRTG	2 cut(s)	264, 390
MspA1I	CMGCKG	2 cut(s)	95, 248
MspR9I	CCNGG	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	36
MvnI	CGCG	1 cut(s)	233
NlaIII	CATG	1 cut(s)	263
NlaIV	GGNNCC	1 cut(s)	33
NmuCI	GTSAC	2 cut(s)	76, 325
NsbI	TGCGCA	1 cut(s)	53
NspV	TTCGAA	1 cut(s)	175
PfeI	GAWTC	1 cut(s)	58
PfoI	TCCNGGA	1 cut(s)	34
PkrI	GCNGC	4 cut(s)	97, 100, 183, 247
PleI	GAGTC	2 cut(s)	259, 355
PmaCI	CACGTG	1 cut(s)	44
PmlI	CACGTG	1 cut(s)	44
PpsI	GAGTC	2 cut(s)	259, 355
Ppu21I	YACGTR	1 cut(s)	44
PsiI	TTATAA	1 cut(s)	284
Psp6I	CCWGG	1 cut(s)	34
PspCI	CACGTG	1 cut(s)	44
PspGI	CCWGG	1 cut(s)	34
PspN4I	GGNNCC	1 cut(s)	33
PstI	CTGCAG	1 cut(s)	100
PvuII	CAGCTG	1 cut(s)	95
RseI	CAYNNNNRTG	2 cut(s)	264, 390
SatI	GCNGC	4 cut(s)	96, 99, 182, 246
SchI	GAGTC	2 cut(s)	260, 356
ScrFI	CCNGG	1 cut(s)	36
SfaNI	GCATC	3 cut(s)	196, 289, 382
SfcI	CTRYAG	1 cut(s)	96
SfuI	TTCGAA	1 cut(s)	175
SmiMI	CAYNNNNRTG	2 cut(s)	264, 390
SsiI	CCGC	3 cut(s)	231, 248, 263
SspMI	CTAG	1 cut(s)	372
StyD4I	CCNGG	1 cut(s)	34
TaaI	ACNGT	1 cut(s)	242
TaiI	ACGT	2 cut(s)	46, 363
TaqI	TCGA	2 cut(s)	175, 310
TfiI	GAWTC	1 cut(s)	58
TscAI	CASTG	2 cut(s)	245, 339
TseFI	GTSAC	2 cut(s)	76, 325
TseI	GCWGC	4 cut(s)	95, 98, 181, 245
Tsp45I	GTSAC	2 cut(s)	76, 325
TspDTI	ATGAA	2 cut(s)	17, 374
TspRI	CASTG	2 cut(s)	245, 339
XspI	CTAG	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.