Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0015289

Physical Location & Seq

Genomic Coordinates Forward (+)

5602222 .. 5603508

Gene Structure 1287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1079700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGAGCCGGAAGAGAGACAAACCCTACTTCTCCCGCCACGCCCCCTACTCCGGATCGAAACGCCGTCGTCCCCTGCCTCCACATCCGGAACCCGAACCCGAGCTCGACAAACCCACTTACAAGCAACCGCCGCCGCCGGCTCTGATCGTAACAGGTCTCCCGCCCGACTGCTCTGTCCTAGACCTCAAGTCCCGGTTCGAGATCTATGGACCCATCTCCCGCATCCGCATTGACCGCGACGCGGTCGGCTACGTCACCTACCGTGCCGCCGACTCCGCTCAAGCCGCCATCGCTGCCTCTCTCGACCCATCATTCGGTATCACCATCGAATCCAAAAAACTGCAGGTGCTTTGGGCGACGGACCCACTTGCCCAATGGCGGAAGGGAGTCGGAGCTGGTGCTGAAAATAGAGATTCCGGTTCCGGGTCGTCGGCAAGTTCGAATCTTGTGAGGGCGGAGGTGCCGCTGAGGGGGCGCGGCAGAGGGAACAAGCTTGCTTCGGCAATAGTGAATCCCAGAGGCGGCGCTACTGCTGTTCCTGCCACTGCTGCTGAGAGTTCTTCGTCGGCGTTGGATGCGCCTTCCAAACCCAGAGAAATCGTTGCTTATGATGATATCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

208

Amino Acids

22.17

Weight (kDa)

9.71

Isoelectric Point (pI)

51.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	48 - 98	1.3e-08	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27050
fragaria_vesca	FvH4_4g32080
malus_domestica	MD13G1079700.v1.1 MD13G1172800.v1.1
prunus_persica	Prupe.1G267100_v2.0.a1
pyrus_communis	pycom03g02960
rosa_chinensis	RchiOBHm_Chr4g0440771
rosa_laevigata	RLG00000006155
rosa_roxburghii	Rroxscaffold_5G00381530
rosa_rugosa	Rorug04G0327800
rosa_samantha	Rh4AG379600 Rh4BG392500 Rh4CG407300 Rh4DG386300
rosa_wichuraiana	Rw4G032650 Rw4G032680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	334
AasI	GACNNNNNNGTC	1 cut(s)	173
Acc36I	ACCTGC	1 cut(s)	334
AccB1I	GGYRCC	1 cut(s)	460
AccBSI	CCGCTC	1 cut(s)	278
AccII	CGCG	3 cut(s)	237, 242, 477
AccIII	TCCGGA	2 cut(s)	50, 85
AclWI	GGATC	1 cut(s)	61
AfiI	CCNNNNNNNGG	7 cut(s)	50, 241, 314, 378, 423, 470, 521
AhdI	GACNNNNNGTC	1 cut(s)	187
AluBI	AGCT	3 cut(s)	103, 395, 493
AluI	AGCT	3 cut(s)	103, 395, 493
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	2 cut(s)	9, 161
AlwI	GGATC	1 cut(s)	61
Ama87I	CYCGRG	1 cut(s)	98
Aor13HI	TCCGGA	2 cut(s)	50, 85
ApeKI	GCWGC	2 cut(s)	293, 548
ArsI	GACNNNNNNTTYG	2 cut(s)	296, 328
AspLEI	GCGC	3 cut(s)	477, 527, 580
AspS9I	GGNCC	2 cut(s)	209, 361
AsuC2I	CCSGG	2 cut(s)	193, 424
AsuHPI	GGTGA	2 cut(s)	247, 313
AsuII	TTCGAA	1 cut(s)	440
AvaI	CYCGRG	1 cut(s)	98
AvaII	GGWCC	2 cut(s)	209, 361
BanI	GGYRCC	1 cut(s)	460
BanII	GRGCYC	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	105
BbvCI	CCTCAGC	1 cut(s)	467
BbvI	GCAGC	2 cut(s)	280, 535
BccI	CCATC	4 cut(s)	221, 296, 316, 332
BceAI	ACGGC	1 cut(s)	48
BcnI	CCSGG	2 cut(s)	193, 424
BcoDI	GTCTC	2 cut(s)	9, 161
BfaI	CTAG	1 cut(s)	179
BfmI	CTRYAG	1 cut(s)	341
BfoI	RGCGCY	1 cut(s)	528
BfuAI	ACCTGC	1 cut(s)	334
BglII	AGATCT	1 cut(s)	201
BisI	GCNGC	9 cut(s)	131, 134, 267, 285, 294, 464, 478, 523, 549
BlsI	GCNGC	9 cut(s)	132, 135, 268, 286, 295, 465, 479, 524, 550
Bme1390I	CCNGG	2 cut(s)	193, 424
Bme18I	GGWCC	2 cut(s)	209, 361
BmeRI	GACNNNNNGTC	1 cut(s)	187
BmeT110I	CYCGRG	1 cut(s)	98
BmgT120I	GGNCC	2 cut(s)	209, 361
BmiI	GGNNCC	5 cut(s)	90, 211, 363, 421, 462
BmrFI	CCNGG	2 cut(s)	193, 424
BmsI	GCATC	2 cut(s)	231, 565
Bpu10I	CCTNAGC	1 cut(s)	467
Bpu14I	TTCGAA	1 cut(s)	440
BpuEI	CTTGAG	2 cut(s)	170, 264
BpuMI	CCSGG	2 cut(s)	193, 424
BsaI	GGTCTC	1 cut(s)	161
BsaWI	WCCGGW	3 cut(s)	50, 85, 416
Bsc4I	CCNNNNNNNGG	7 cut(s)	50, 241, 314, 378, 423, 470, 521
Bse118I	RCCGGY	1 cut(s)	136
BseAI	TCCGGA	2 cut(s)	50, 85
BseGI	GGATG	3 cut(s)	82, 222, 580
BseLI	CCNNNNNNNGG	7 cut(s)	50, 241, 314, 378, 423, 470, 521
BseMII	CTCAG	2 cut(s)	458, 543
BseXI	GCAGC	2 cut(s)	280, 535
Bsh1236I	CGCG	3 cut(s)	237, 242, 477
Bsh1285I	CGRYCG	1 cut(s)	246
BshNI	GGYRCC	1 cut(s)	460
BsiEI	CGRYCG	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	105
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	7 cut(s)	7, 51, 86, 137, 193, 417, 423
BslFI	GGGAC	2 cut(s)	54, 175
BslI	CCNNNNNNNGG	7 cut(s)	50, 241, 314, 378, 423, 470, 521
BsmAI	GTCTC	2 cut(s)	9, 161
BsmFI	GGGAC	2 cut(s)	54, 175
Bso31I	GGTCTC	1 cut(s)	161
BsoBI	CYCGRG	1 cut(s)	98
Bsp119I	TTCGAA	1 cut(s)	440
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp13I	TCCGGA	2 cut(s)	50, 85
Bsp143I	GATC	3 cut(s)	53, 144, 201
BspCNI	CTCAG	2 cut(s)	459, 544
BspEI	TCCGGA	2 cut(s)	50, 85
BspFNI	CGCG	3 cut(s)	237, 242, 477
BspLI	GGNNCC	5 cut(s)	90, 211, 363, 421, 462
BspMAI	CTGCAG	1 cut(s)	345
BspMI	ACCTGC	1 cut(s)	334
BspPI	GGATC	1 cut(s)	61
BspT104I	TTCGAA	1 cut(s)	440
BspT107I	GGYRCC	1 cut(s)	460
BspTNI	GGTCTC	1 cut(s)	161
BsrBI	CCGCTC	1 cut(s)	278
BsrFI	RCCGGY	1 cut(s)	136
BssAI	RCCGGY	1 cut(s)	136
BssMI	GATC	3 cut(s)	53, 144, 201
Bst4CI	ACNGT	1 cut(s)	263
Bst6I	CTCTTC	1 cut(s)	5
BstBI	TTCGAA	1 cut(s)	440
BstC8I	GCNNGC	2 cut(s)	138, 495
BstDEI	CTNAG	2 cut(s)	467, 552
BstF5I	GGATG	3 cut(s)	82, 222, 580
BstFNI	CGCG	3 cut(s)	237, 242, 477
BstH2I	RGCGCY	1 cut(s)	528
BstHHI	GCGC	3 cut(s)	477, 527, 580
BstKTI	GATC	3 cut(s)	56, 147, 204
BstMAI	GTCTC	2 cut(s)	9, 161
BstMBI	GATC	3 cut(s)	53, 144, 201
BstMCI	CGRYCG	1 cut(s)	246
BstSCI	CCNGG	2 cut(s)	191, 422
BstSFI	CTRYAG	1 cut(s)	341
BstUI	CGCG	3 cut(s)	237, 242, 477
BstV1I	GCAGC	2 cut(s)	280, 535
BstX2I	RGATCY	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	201
BtgZI	GCGATG	1 cut(s)	274
BtsCI	GGATG	3 cut(s)	82, 222, 580
BtsI	GCAGTG	1 cut(s)	543
BtsIMutI	CAGTG	1 cut(s)	543
BveI	ACCTGC	1 cut(s)	334
Cac8I	GCNNGC	2 cut(s)	138, 495
CfoI	GCGC	3 cut(s)	477, 527, 580
Cfr10I	RCCGGY	1 cut(s)	136
Cfr13I	GGNCC	2 cut(s)	209, 361
CseI	GACGC	1 cut(s)	248
CviJI	RGCY	7 cut(s)	6, 103, 140, 249, 284, 395, 493
CviKI_1	RGCY	7 cut(s)	6, 103, 140, 249, 284, 395, 493
DdeI	CTNAG	2 cut(s)	467, 552
DpnI	GATC	3 cut(s)	55, 146, 203
DpnII	GATC	3 cut(s)	53, 144, 201
DrdI	GACNNNNNNGTC	1 cut(s)	173
DriI	GACNNNNNGTC	1 cut(s)	187
DseDI	GACNNNNNNGTC	1 cut(s)	173
Eam1104I	CTCTTC	1 cut(s)	5
Eam1105I	GACNNNNNGTC	1 cut(s)	187
EarI	CTCTTC	1 cut(s)	5
EciI	GGCGGA	2 cut(s)	394, 470
Ecl136II	GAGCTC	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	161
Eco32I	GATATC	1 cut(s)	616
Eco47I	GGWCC	2 cut(s)	209, 361
Eco53kI	GAGCTC	1 cut(s)	103
Eco88I	CYCGRG	1 cut(s)	98
EcoICRI	GAGCTC	1 cut(s)	103
EcoRV	GATATC	1 cut(s)	616
EcoT38I	GRGCYC	1 cut(s)	105
FaiI	YATR	2 cut(s)	207, 609
FaqI	GGGAC	2 cut(s)	54, 175
FauI	CCCGC	3 cut(s)	41, 168, 227
Fnu4HI	GCNGC	9 cut(s)	131, 134, 267, 285, 294, 464, 478, 523, 549
FokI	GGATG	3 cut(s)	69, 209, 587
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	9 cut(s)	131, 134, 267, 285, 294, 464, 478, 523, 549
FspBI	CTAG	1 cut(s)	179
GlaI	GCGC	3 cut(s)	476, 526, 579
GluI	GCNGC	9 cut(s)	131, 134, 267, 285, 294, 464, 478, 523, 549
HaeII	RGCGCY	1 cut(s)	528
HapII	CCGG	7 cut(s)	7, 51, 86, 137, 193, 417, 423
HgaI	GACGC	1 cut(s)	248
HhaI	GCGC	3 cut(s)	477, 527, 580
Hin6I	GCGC	3 cut(s)	475, 525, 578
HinP1I	GCGC	3 cut(s)	475, 525, 578
HindIII	AAGCTT	1 cut(s)	491
HinfI	GANTC	6 cut(s)	272, 329, 387, 413, 442, 511
HpaII	CCGG	7 cut(s)	7, 51, 86, 137, 193, 417, 423
HphI	GGTGA	2 cut(s)	247, 313
Hpy188I	TCNGA	2 cut(s)	144, 392
Hpy188III	TCNNGA	4 cut(s)	51, 86, 199, 302
Hpy99I	CGWCG	5 cut(s)	69, 242, 361, 433, 568
HpyAV	CCTTC	2 cut(s)	376, 591
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	1 cut(s)	343
HpyF3I	CTNAG	2 cut(s)	467, 552
HpySE526I	ACGT	1 cut(s)	252
HspAI	GCGC	3 cut(s)	475, 525, 578
Kpn2I	TCCGGA	2 cut(s)	50, 85
KroI	GCCGGC	1 cut(s)	136
KroNI	GCCGGC	1 cut(s)	138
Kzo9I	GATC	3 cut(s)	53, 144, 201
LmnI	GCTCC	1 cut(s)	392
Lsp1109I	GCAGC	2 cut(s)	280, 535
LweI	GCATC	2 cut(s)	231, 565
MaeI	CTAG	1 cut(s)	179
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	2 cut(s)	148, 253
MalI	GATC	3 cut(s)	55, 146, 203
MbiI	CCGCTC	1 cut(s)	278
MboI	GATC	3 cut(s)	53, 144, 201
MboII	GAAGA	2 cut(s)	22, 552
MflI	RGATCY	1 cut(s)	201
MhlI	GDGCHC	1 cut(s)	105
MlyI	GAGTC	2 cut(s)	266, 396
MmeI	TCCRAC	2 cut(s)	370, 552
MnlI	CCTC	8 cut(s)	87, 194, 307, 444, 451, 462, 476, 512
MroI	TCCGGA	2 cut(s)	50, 85
MroNI	GCCGGC	1 cut(s)	136
MspA1I	CMGCKG	1 cut(s)	466
MspI	CCGG	7 cut(s)	7, 51, 86, 137, 193, 417, 423
MspR9I	CCNGG	2 cut(s)	193, 424
MvnI	CGCG	3 cut(s)	237, 242, 477
NaeI	GCCGGC	1 cut(s)	138
NciI	CCSGG	2 cut(s)	193, 424
NdeII	GATC	3 cut(s)	53, 144, 201
NgoMIV	GCCGGC	1 cut(s)	136
NlaIV	GGNNCC	5 cut(s)	90, 211, 363, 421, 462
NmuCI	GTSAC	1 cut(s)	253
NspV	TTCGAA	1 cut(s)	440
PaqCI	CACCTGC	1 cut(s)	334
PcsI	WCGNNNNNNNCGW	1 cut(s)	437
PdiI	GCCGGC	1 cut(s)	138
PfeI	GAWTC	4 cut(s)	329, 413, 442, 511
PflFI	GACNNNGTC	1 cut(s)	242
PkrI	GCNGC	9 cut(s)	132, 135, 268, 286, 295, 465, 479, 524, 550
PleI	GAGTC	2 cut(s)	266, 395
PpsI	GAGTC	2 cut(s)	266, 395
Psp124BI	GAGCTC	1 cut(s)	105
PspN4I	GGNNCC	5 cut(s)	90, 211, 363, 421, 462
PspPI	GGNCC	2 cut(s)	209, 361
PstI	CTGCAG	1 cut(s)	345
PsuI	RGATCY	1 cut(s)	201
PsyI	GACNNNGTC	1 cut(s)	242
SacI	GAGCTC	1 cut(s)	105
SatI	GCNGC	9 cut(s)	131, 134, 267, 285, 294, 464, 478, 523, 549
Sau3AI	GATC	3 cut(s)	53, 144, 201
Sau96I	GGNCC	2 cut(s)	209, 361
SchI	GAGTC	2 cut(s)	266, 396
ScrFI	CCNGG	2 cut(s)	193, 424
SduI	GDGCHC	1 cut(s)	105
SetI	ASST	9 cut(s)	105, 157, 186, 255, 260, 348, 397, 462, 495
SfaNI	GCATC	2 cut(s)	231, 565
SfcI	CTRYAG	1 cut(s)	341
SfuI	TTCGAA	1 cut(s)	440
SinI	GGWCC	2 cut(s)	209, 361
SmlI	CTYRAG	2 cut(s)	185, 279
SmoI	CTYRAG	2 cut(s)	185, 279
SspMI	CTAG	1 cut(s)	179
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	2 cut(s)	191, 422
TaaI	ACNGT	1 cut(s)	263
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	6 cut(s)	56, 105, 198, 303, 327, 440
TauI	GCSGC	7 cut(s)	133, 136, 269, 287, 466, 480, 525
TfiI	GAWTC	4 cut(s)	329, 413, 442, 511
TscAI	CASTG	1 cut(s)	550
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	2 cut(s)	293, 548
Tsp45I	GTSAC	1 cut(s)	253
TspGWI	ACGGA	1 cut(s)	374
TspRI	CASTG	1 cut(s)	550
Tth111I	GACNNNGTC	1 cut(s)	242
VpaK11BI	GGWCC	2 cut(s)	209, 361
XcmI	CCANNNNNNNNNTGG	1 cut(s)	372
XspI	CTAG	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.