Rh4BG392500

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0015289
Physical Location & Seq
Forward (+)
54478383 .. 54479449
1067 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG392500.1

Sequence Viewer

Length: 612 bp
ATGAACCGCAAGAGAAATAAACCCTACTTCTCTTCCCGCCGCGCCCCCGCCTCCGCATCCAAACGGCGTCGTCCCCTCCCCCCTCACGCGGAGGACCCCGAAGAAGCCGAGCTGGACAAGCCCACCTTCAAGCCGCCGCCGCCGCCCGCTCTGGTCGTAACGGGTCTCCCGCCGGACTCCTCCGTCCTCGACCTCAAGTCCCGCTTCGAGATCTACGGCCCCATCTCCCGCATCCGCATCGATCGCGACGCCGTCGGCCACGTGGCATTCCGCACCGCCGACGCCGCCCAAGCCGCCGTGGACGCCGCCCTCGACTCCTCCTTCGGCATTACCCTCCACTCCAAAAAGTTACAGGTACTGTGGGCAACAGACCCACTAGCACAGTGGCGGAAAGGAGTTGCGGTGGATGATGCTAATAGGGATTCGAGTAATGAGACGTCGTCGTCGTCCAAGCTTTTGAGGGCTGGGATGCCACTGAGAAGTCATGGCAGAGGTAACAAGCTTGCTTCGGCTATAGTCAACCCAAGAGGAGCTCCTGAGAGTTCTGAATCGTCAGTGTTGGAGGTGCCTTCGAGAGCAAGAGAGATTGTGGCTTATGATGACATTCTGTAA

Protein Analysis

203

Amino Acids

22.09

Weight (kDa)

9.73

Isoelectric Point (pI)

60.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 51 - 102 5.8e-07 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015289)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27050
fragaria_vesca FvH4_4g32080
malus_domestica MD13G1079700.v1.1 MD13G1172800.v1.1
prunus_persica Prupe.1G267100_v2.0.a1
pyrus_communis pycom03g02960
rosa_chinensis RchiOBHm_Chr4g0440771
rosa_laevigata RLG00000006155
rosa_roxburghii Rroxscaffold_5G00381530
rosa_rugosa Rorug04G0327800
rosa_samantha Rh4AG379600 Rh4BG392500 Rh4CG407300 Rh4DG386300
rosa_wichuraiana Rw4G032650 Rw4G032680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 182, 442
AatII GACGTC 1 cut(s) 440
AccB1I GGYRCC 1 cut(s) 565
AccBSI CCGCTC 1 cut(s) 149
AccII CGCG 3 cut(s) 42, 89, 246
AcoI YGGCCR 1 cut(s) 256
AcvI CACGTG 1 cut(s) 262
AcyI GRCGYC 5 cut(s) 67, 249, 282, 303, 437
AfaI GTAC 1 cut(s) 357
AfiI CCNNNNNNNGG 1 cut(s) 88
AgsI TTSAA 1 cut(s) 130
AhdI GACNNNNNGTC 1 cut(s) 196
AluBI AGCT 4 cut(s) 112, 454, 502, 533
AluI AGCT 4 cut(s) 112, 454, 502, 533
Alw21I GWGCWC 1 cut(s) 535
Alw26I GTCTC 2 cut(s) 170, 428
AlwNI CAGNNNCTG 1 cut(s) 358
AoxI GGCC 2 cut(s) 217, 256
ArsI GACNNNNNNTTYG 2 cut(s) 305, 337
AspLEI GCGC 1 cut(s) 44
AspS9I GGNCC 2 cut(s) 94, 218
AvaII GGWCC 1 cut(s) 94
BanI GGYRCC 1 cut(s) 565
BanII GRGCYC 1 cut(s) 535
BbrPI CACGTG 1 cut(s) 262
Bbv12I GWGCWC 1 cut(s) 535
BccI CCATC 1 cut(s) 230
BceAI ACGGC 4 cut(s) 80, 232, 236, 281
BcgI CGANNNNNNTGC 2 cut(s) 220, 254
BcoDI GTCTC 2 cut(s) 170, 428
BfaI CTAG 1 cut(s) 377
BfmI CTRYAG 1 cut(s) 513
BglII AGATCT 1 cut(s) 210
BisI GCNGC 8 cut(s) 40, 134, 137, 140, 143, 285, 294, 306
BlsI GCNGC 8 cut(s) 41, 135, 138, 141, 144, 286, 295, 307
Bme18I GGWCC 1 cut(s) 94
BmeRI GACNNNNNGTC 1 cut(s) 196
BmgT120I GGNCC 2 cut(s) 94, 218
BmiI GGNNCC 3 cut(s) 96, 220, 567
BmsI GCATC 5 cut(s) 65, 240, 246, 400, 459
BpuEI CTTGAG 1 cut(s) 179
Bsa29I ATCGAT 1 cut(s) 240
BsaAI YACGTR 1 cut(s) 262
BsaHI GRCGYC 5 cut(s) 67, 249, 282, 303, 437
BsaI GGTCTC 1 cut(s) 170
BsaJI CCNNGG 1 cut(s) 297
BsaXI ACNNNNNCTCC 2 cut(s) 387, 417
Bsc4I CCNNNNNNNGG 1 cut(s) 88
BseCI ATCGAT 1 cut(s) 240
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 4 cut(s) 56, 231, 412, 474
BseLI CCNNNNNNNGG 1 cut(s) 88
BseMII CTCAG 2 cut(s) 467, 528
BseRI GAGGAG 3 cut(s) 169, 307, 543
BseYI CCCAGC 1 cut(s) 464
Bsh1236I CGCG 3 cut(s) 42, 89, 246
Bsh1285I CGRYCG 1 cut(s) 244
BshFI GGCC 2 cut(s) 219, 258
BshNI GGYRCC 1 cut(s) 565
BshVI ATCGAT 1 cut(s) 240
BsiEI CGRYCG 1 cut(s) 244
BsiHKAI GWGCWC 1 cut(s) 535
BsiSI CCGG 1 cut(s) 173
BslFI GGGAC 2 cut(s) 57, 184
BslI CCNNNNNNNGG 1 cut(s) 88
BsmAI GTCTC 2 cut(s) 170, 428
BsmBI CGTCTC 1 cut(s) 428
BsmFI GGGAC 2 cut(s) 57, 184
BsmI GAATGC 1 cut(s) 266
BsnI GGCC 2 cut(s) 219, 258
Bso31I GGTCTC 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 535
Bsp143I GATC 2 cut(s) 210, 241
Bsp68I TCGCGA 1 cut(s) 246
BspANI GGCC 2 cut(s) 219, 258
BspCNI CTCAG 2 cut(s) 468, 529
BspDI ATCGAT 1 cut(s) 240
BspFNI CGCG 3 cut(s) 42, 89, 246
BspLI GGNNCC 3 cut(s) 96, 220, 567
BspT107I GGYRCC 1 cut(s) 565
BspTNI GGTCTC 1 cut(s) 170
BsrBI CCGCTC 1 cut(s) 149
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 2 cut(s) 210, 241
BssNI GRCGYC 5 cut(s) 67, 249, 282, 303, 437
Bst4CI ACNGT 2 cut(s) 360, 384
Bst6I CTCTTC 1 cut(s) 37
BstACI GRCGYC 5 cut(s) 67, 249, 282, 303, 437
BstBAI YACGTR 1 cut(s) 262
BstC8I GCNNGC 2 cut(s) 147, 504
BstDEI CTNAG 2 cut(s) 476, 537
BstDSI CCRYGG 1 cut(s) 297
BstF5I GGATG 4 cut(s) 56, 231, 412, 474
BstFNI CGCG 3 cut(s) 42, 89, 246
BstHHI GCGC 1 cut(s) 44
BstKTI GATC 2 cut(s) 213, 244
BstMAI GTCTC 2 cut(s) 170, 428
BstMBI GATC 2 cut(s) 210, 241
BstMCI CGRYCG 1 cut(s) 244
BstMWI GCNNNNNNNGC 8 cut(s) 118, 139, 142, 243, 284, 290, 293, 302
BstSFI CTRYAG 1 cut(s) 513
BstUI CGCG 3 cut(s) 42, 89, 246
BstX2I RGATCY 1 cut(s) 210
BstYI RGATCY 1 cut(s) 210
Bsu15I ATCGAT 1 cut(s) 240
BsuRI GGCC 2 cut(s) 219, 258
BsuTUI ATCGAT 1 cut(s) 240
BtgI CCRYGG 1 cut(s) 297
BtsCI GGATG 4 cut(s) 56, 231, 412, 474
BtsIMutI CAGTG 3 cut(s) 389, 473, 561
BtuMI TCGCGA 1 cut(s) 246
Cac8I GCNNGC 2 cut(s) 147, 504
CaiI CAGNNNCTG 1 cut(s) 358
CfoI GCGC 1 cut(s) 44
Cfr13I GGNCC 2 cut(s) 94, 218
ClaI ATCGAT 1 cut(s) 240
CseI GACGC 4 cut(s) 56, 257, 290, 311
Csp6I GTAC 1 cut(s) 356
CviAII CATG 1 cut(s) 485
CviQI GTAC 1 cut(s) 356
DdeI CTNAG 2 cut(s) 476, 537
DpnI GATC 2 cut(s) 212, 243
DpnII GATC 2 cut(s) 210, 241
DrdI GACNNNNNNGTC 2 cut(s) 182, 442
DriI GACNNNNNGTC 1 cut(s) 196
DseDI GACNNNNNNGTC 2 cut(s) 182, 442
EaeI YGGCCR 1 cut(s) 256
Eam1104I CTCTTC 1 cut(s) 37
Eam1105I GACNNNNNGTC 1 cut(s) 196
EarI CTCTTC 1 cut(s) 37
EciI GGCGGA 1 cut(s) 403
Ecl136II GAGCTC 1 cut(s) 533
Eco24I GRGCYC 1 cut(s) 535
Eco31I GGTCTC 1 cut(s) 170
Eco47I GGWCC 1 cut(s) 94
Eco53kI GAGCTC 1 cut(s) 533
Eco72I CACGTG 1 cut(s) 262
EcoICRI GAGCTC 1 cut(s) 533
EcoO109I RGGNCCY 1 cut(s) 94
EcoT38I GRGCYC 1 cut(s) 535
Esp3I CGTCTC 1 cut(s) 428
FaeI CATG 1 cut(s) 488
FaiI YATR 3 cut(s) 486, 515, 597
FalI AAGNNNNNCTT 4 cut(s) 110, 142, 188, 220
FaqI GGGAC 2 cut(s) 57, 184
FatI CATG 1 cut(s) 484
FauI CCCGC 6 cut(s) 44, 55, 154, 177, 209, 236
Fnu4HI GCNGC 8 cut(s) 40, 134, 137, 140, 143, 285, 294, 306
FokI GGATG 4 cut(s) 43, 218, 419, 481
FriOI GRGCYC 1 cut(s) 535
Fsp4HI GCNGC 8 cut(s) 40, 134, 137, 140, 143, 285, 294, 306
FspBI CTAG 1 cut(s) 377
GlaI GCGC 1 cut(s) 43
GluI GCNGC 8 cut(s) 40, 134, 137, 140, 143, 285, 294, 306
GsaI CCCAGC 1 cut(s) 468
HaeIII GGCC 2 cut(s) 219, 258
HapII CCGG 1 cut(s) 173
HgaI GACGC 4 cut(s) 56, 257, 290, 311
HhaI GCGC 1 cut(s) 44
Hin1I GRCGYC 5 cut(s) 67, 249, 282, 303, 437
Hin1II CATG 1 cut(s) 488
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HincII GTYRAC 1 cut(s) 520
HindII GTYRAC 1 cut(s) 520
HindIII AAGCTT 2 cut(s) 452, 500
HinfI GANTC 4 cut(s) 176, 314, 422, 548
HpaII CCGG 1 cut(s) 173
Hpy166II GTNNAC 2 cut(s) 301, 520
Hpy188I TCNGA 1 cut(s) 547
Hpy188III TCNNGA 4 cut(s) 208, 245, 536, 573
Hpy8I GTNNAC 2 cut(s) 301, 520
Hpy99I CGWCG 7 cut(s) 72, 251, 257, 284, 442, 445, 448
HpyAV CCTTC 3 cut(s) 136, 331, 579
HpyCH4III ACNGT 2 cut(s) 360, 384
HpyCH4IV ACGT 2 cut(s) 261, 437
HpyF10VI GCNNNNNNNGC 8 cut(s) 118, 139, 142, 243, 284, 290, 293, 302
HpyF3I CTNAG 2 cut(s) 476, 537
HpySE526I ACGT 2 cut(s) 261, 437
Hsp92I GRCGYC 5 cut(s) 67, 249, 282, 303, 437
Hsp92II CATG 1 cut(s) 488
HspAI GCGC 1 cut(s) 42
Kzo9I GATC 2 cut(s) 210, 241
LmnI GCTCC 2 cut(s) 530, 538
LpnPI CCDG 6 cut(s) 98, 137, 186, 338, 450, 549
LweI GCATC 5 cut(s) 65, 240, 246, 400, 459
MaeI CTAG 1 cut(s) 377
MaeII ACGT 2 cut(s) 261, 437
MaeIII GTNAC 3 cut(s) 157, 348, 494
MalI GATC 2 cut(s) 212, 243
MbiI CCGCTC 1 cut(s) 149
MboI GATC 2 cut(s) 210, 241
MboII GAAGA 2 cut(s) 24, 113
MflI RGATCY 1 cut(s) 210
MhlI GDGCHC 1 cut(s) 535
MlyI GAGTC 2 cut(s) 170, 308
MmeI TCCRAC 1 cut(s) 540
MspI CCGG 1 cut(s) 173
Mva1269I GAATGC 1 cut(s) 266
MvnI CGCG 3 cut(s) 42, 89, 246
MwoI GCNNNNNNNGC 8 cut(s) 118, 139, 142, 243, 284, 290, 293, 302
NdeII GATC 2 cut(s) 210, 241
NlaIII CATG 1 cut(s) 488
NlaIV GGNNCC 3 cut(s) 96, 220, 567
NmeAIII GCCGAG 1 cut(s) 133
NruI TCGCGA 1 cut(s) 246
PcsI WCGNNNNNNNCGW 2 cut(s) 309, 443
PctI GAATGC 1 cut(s) 266
PfeI GAWTC 2 cut(s) 422, 548
PflFI GACNNNGTC 2 cut(s) 251, 439
PkrI GCNGC 8 cut(s) 41, 135, 138, 141, 144, 286, 295, 307
Ple19I CGATCG 1 cut(s) 244
PleI GAGTC 2 cut(s) 170, 308
PmaCI CACGTG 1 cut(s) 262
PmlI CACGTG 1 cut(s) 262
PpsI GAGTC 2 cut(s) 170, 308
Ppu21I YACGTR 1 cut(s) 262
PpuMI RGGWCCY 1 cut(s) 94
Psp124BI GAGCTC 1 cut(s) 535
Psp5II RGGWCCY 1 cut(s) 94
PspCI CACGTG 1 cut(s) 262
PspFI CCCAGC 1 cut(s) 464
PspN4I GGNNCC 3 cut(s) 96, 220, 567
PspPI GGNCC 2 cut(s) 94, 218
PspPPI RGGWCCY 1 cut(s) 94
PstNI CAGNNNCTG 1 cut(s) 358
PsuI RGATCY 1 cut(s) 210
PsyI GACNNNGTC 2 cut(s) 251, 439
PvuI CGATCG 1 cut(s) 244
RruI TCGCGA 1 cut(s) 246
RsaI GTAC 1 cut(s) 357
RsaNI GTAC 1 cut(s) 356
SacI GAGCTC 1 cut(s) 535
SatI GCNGC 8 cut(s) 40, 134, 137, 140, 143, 285, 294, 306
Sau3AI GATC 2 cut(s) 210, 241
Sau96I GGNCC 2 cut(s) 94, 218
SchI GAGTC 2 cut(s) 170, 308
SduI GDGCHC 1 cut(s) 535
SfaNI GCATC 5 cut(s) 65, 240, 246, 400, 459
SfcI CTRYAG 1 cut(s) 513
SinI GGWCC 1 cut(s) 94
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
SspMI CTAG 1 cut(s) 377
SstI GAGCTC 1 cut(s) 535
TaaI ACNGT 2 cut(s) 360, 384
TaiI ACGT 2 cut(s) 264, 440
TaqI TCGA 6 cut(s) 189, 207, 240, 312, 425, 572
TauI GCSGC 8 cut(s) 42, 136, 139, 142, 145, 287, 296, 308
TfiI GAWTC 2 cut(s) 422, 548
TscAI CASTG 3 cut(s) 389, 480, 561
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 172
TspRI CASTG 3 cut(s) 389, 480, 561
Tth111I GACNNNGTC 2 cut(s) 251, 439
VpaK11BI GGWCC 1 cut(s) 94
XcmI CCANNNNNNNNNTGG 1 cut(s) 381
XspI CTAG 1 cut(s) 377
ZraI GACGTC 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.