Prupe.1G267100_v2.0.a1

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015289
Physical Location & Seq
Reverse (-)
27471477 .. 27472385
909 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G267100.1

Sequence Viewer

Length: 606 bp
ATGAGCCGGAAGAGAGACAAACCCTACTTCTCCCGCCACGTCCCCGCCTCCGCCTCCGGATGGAAACGCCGTCGTCCCCTGCCTCCTCATCCCGAGCCCGAACCAGAGCTCGACAAGCCAACTTACAAGCTGCCGCCACCGCCGGCTCTTGTCATTACAGGTCTCCCGCCAGACTGCTCCGTCCTAGACCTCAAGTCCCGGTTCGAAATATACGGAGCCATCTCTCGCATCCGCATTGACCGCGATGCGGTCGGCTACGTCACCTACCGCGCCACCGACTCGGCTGAAGCCGCCATTGCCGCCTCCCTCGACCCCTCCTTTGGCATTACCCTCGACTCTAAAAAGTTGCAGGTCCTTTGGGCAACAGACCCACTTGCCCAATGGAGGAAAGGAGTTGGAGTTGGTGCTGAAAACAGAGATTCTAGTAATGGGTCATCCTCAAATTCCAATCTTTTGAGGGCTGAGGTGCCTCTGAGGAGACATGGTAGAGGCAACAAGCTTGCTTCGGCTATAGTGAACCCCAGAGTTGCTGCTGCTGATGGTTCTTCAGCATTGGATGTGCCTGCCAAAGCCAGAGAAATCGTTGCTTATGATGACATTCTGTAA

Protein Analysis

202

Amino Acids

21.86

Weight (kDa)

9.63

Isoelectric Point (pI)

52.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015289)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27050
fragaria_vesca FvH4_4g32080
malus_domestica MD13G1079700.v1.1 MD13G1172800.v1.1
prunus_persica Prupe.1G267100_v2.0.a1
pyrus_communis pycom03g02960
rosa_chinensis RchiOBHm_Chr4g0440771
rosa_laevigata RLG00000006155
rosa_roxburghii Rroxscaffold_5G00381530
rosa_rugosa Rorug04G0327800
rosa_samantha Rh4AG379600 Rh4BG392500 Rh4CG407300 Rh4DG386300
rosa_wichuraiana Rw4G032650 Rw4G032680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 179
Acc36I ACCTGC 1 cut(s) 340
AccB1I GGYRCC 1 cut(s) 466
AccII CGCG 2 cut(s) 243, 270
AccIII TCCGGA 1 cut(s) 56
AcsI RAATTY 1 cut(s) 442
AcuI CTGAAG 2 cut(s) 306, 531
AfiI CCNNNNNNNGG 4 cut(s) 60, 247, 320, 384
AhdI GACNNNNNGTC 1 cut(s) 193
AjiI CACGTC 1 cut(s) 40
AluBI AGCT 3 cut(s) 109, 130, 499
AluI AGCT 3 cut(s) 109, 130, 499
Alw21I GWGCWC 1 cut(s) 111
Alw26I GTCTC 3 cut(s) 9, 167, 472
Ama87I CYCGRG 1 cut(s) 92
Aor13HI TCCGGA 1 cut(s) 56
ApeKI GCWGC 3 cut(s) 130, 530, 533
ApoI RAATTY 1 cut(s) 442
ArsI GACNNNNNNTTYG 2 cut(s) 302, 334
AspLEI GCGC 1 cut(s) 272
AspS9I GGNCC 1 cut(s) 352
AsuC2I CCSGG 1 cut(s) 199
AsuHPI GGTGA 1 cut(s) 253
AsuII TTCGAA 1 cut(s) 204
AvaI CYCGRG 1 cut(s) 92
AvaII GGWCC 1 cut(s) 352
BanI GGYRCC 1 cut(s) 466
BanII GRGCYC 2 cut(s) 99, 111
Bbv12I GWGCWC 1 cut(s) 111
BbvCI CCTCAGC 1 cut(s) 462
BbvI GCAGC 3 cut(s) 117, 517, 520
BccI CCATC 3 cut(s) 54, 227, 533
BceAI ACGGC 1 cut(s) 54
BcgI CGANNNNNNTGC 2 cut(s) 313, 347
BcnI CCSGG 1 cut(s) 199
BcoDI GTCTC 3 cut(s) 9, 167, 472
BfaI CTAG 2 cut(s) 185, 423
BfmI CTRYAG 1 cut(s) 510
BfuAI ACCTGC 1 cut(s) 340
BisI GCNGC 6 cut(s) 131, 134, 291, 300, 531, 534
BlsI GCNGC 6 cut(s) 132, 135, 292, 301, 532, 535
Bme1390I CCNGG 1 cut(s) 199
Bme18I GGWCC 1 cut(s) 352
BmeRI GACNNNNNGTC 1 cut(s) 193
BmeT110I CYCGRG 1 cut(s) 92
BmgBI CACGTC 1 cut(s) 40
BmgT120I GGNCC 1 cut(s) 352
BmiI GGNNCC 2 cut(s) 217, 468
BmrFI CCNGG 1 cut(s) 199
BmsI GCATC 2 cut(s) 235, 237
Bpu10I CCTNAGC 1 cut(s) 462
Bpu14I TTCGAA 1 cut(s) 204
BpuEI CTTGAG 1 cut(s) 176
BpuMI CCSGG 1 cut(s) 199
BsaI GGTCTC 1 cut(s) 167
BsaWI WCCGGW 1 cut(s) 56
BsaXI ACNNNNNCTCC 4 cut(s) 384, 414, 469, 499
Bsc4I CCNNNNNNNGG 4 cut(s) 60, 247, 320, 384
Bse118I RCCGGY 1 cut(s) 142
Bse3DI GCAATG 1 cut(s) 294
BseAI TCCGGA 1 cut(s) 56
BseGI GGATG 5 cut(s) 65, 88, 228, 434, 562
BseLI CCNNNNNNNGG 4 cut(s) 60, 247, 320, 384
BseMI GCAATG 1 cut(s) 294
BseMII CTCAG 2 cut(s) 453, 464
BseRI GAGGAG 2 cut(s) 75, 490
BseXI GCAGC 3 cut(s) 117, 517, 520
Bsh1236I CGCG 2 cut(s) 243, 270
Bsh1285I CGRYCG 1 cut(s) 252
BshNI GGYRCC 1 cut(s) 466
BsiEI CGRYCG 1 cut(s) 252
BsiHKAI GWGCWC 1 cut(s) 111
BsiHKCI CYCGRG 1 cut(s) 92
BsiSI CCGG 4 cut(s) 7, 57, 143, 199
BslFI GGGAC 3 cut(s) 26, 60, 181
BslI CCNNNNNNNGG 4 cut(s) 60, 247, 320, 384
BsmAI GTCTC 3 cut(s) 9, 167, 472
BsmFI GGGAC 3 cut(s) 26, 60, 181
Bso31I GGTCTC 1 cut(s) 167
BsoBI CYCGRG 1 cut(s) 92
Bsp119I TTCGAA 1 cut(s) 204
Bsp1286I GDGCHC 2 cut(s) 99, 111
Bsp13I TCCGGA 1 cut(s) 56
BspCNI CTCAG 2 cut(s) 454, 465
BspEI TCCGGA 1 cut(s) 56
BspFNI CGCG 2 cut(s) 243, 270
BspLI GGNNCC 2 cut(s) 217, 468
BspMI ACCTGC 1 cut(s) 340
BspT104I TTCGAA 1 cut(s) 204
BspT107I GGYRCC 1 cut(s) 466
BspTNI GGTCTC 1 cut(s) 167
BsrDI GCAATG 1 cut(s) 294
BsrFI RCCGGY 1 cut(s) 142
BssAI RCCGGY 1 cut(s) 142
Bst6I CTCTTC 1 cut(s) 5
BstBI TTCGAA 1 cut(s) 204
BstC8I GCNNGC 3 cut(s) 144, 501, 564
BstDEI CTNAG 2 cut(s) 462, 473
BstF5I GGATG 5 cut(s) 65, 88, 228, 434, 562
BstFNI CGCG 2 cut(s) 243, 270
BstHHI GCGC 1 cut(s) 272
BstMAI GTCTC 3 cut(s) 9, 167, 472
BstMCI CGRYCG 1 cut(s) 252
BstMWI GCNNNNNNNGC 6 cut(s) 115, 139, 240, 290, 296, 299
BstSCI CCNGG 1 cut(s) 197
BstSFI CTRYAG 1 cut(s) 510
BstUI CGCG 2 cut(s) 243, 270
BstV1I GCAGC 3 cut(s) 117, 517, 520
BtgZI GCGATG 1 cut(s) 258
BtrI CACGTC 1 cut(s) 40
BtsCI GGATG 5 cut(s) 65, 88, 228, 434, 562
BveI ACCTGC 1 cut(s) 340
Cac8I GCNNGC 3 cut(s) 144, 501, 564
CfoI GCGC 1 cut(s) 272
Cfr10I RCCGGY 1 cut(s) 142
Cfr13I GGNCC 1 cut(s) 352
CviAII CATG 1 cut(s) 482
DdeI CTNAG 2 cut(s) 462, 473
DrdI GACNNNNNNGTC 1 cut(s) 179
DriI GACNNNNNGTC 1 cut(s) 193
DseDI GACNNNNNNGTC 1 cut(s) 179
Eam1104I CTCTTC 1 cut(s) 5
Eam1105I GACNNNNNGTC 1 cut(s) 193
EarI CTCTTC 1 cut(s) 5
EciI GGCGGA 1 cut(s) 40
Ecl136II GAGCTC 1 cut(s) 109
Eco24I GRGCYC 2 cut(s) 99, 111
Eco31I GGTCTC 1 cut(s) 167
Eco47I GGWCC 1 cut(s) 352
Eco53kI GAGCTC 1 cut(s) 109
Eco57I CTGAAG 2 cut(s) 306, 531
Eco88I CYCGRG 1 cut(s) 92
EcoICRI GAGCTC 1 cut(s) 109
EcoO109I RGGNCCY 1 cut(s) 352
EcoT38I GRGCYC 2 cut(s) 99, 111
FaeI CATG 1 cut(s) 485
FaiI YATR 4 cut(s) 211, 483, 512, 591
FaqI GGGAC 3 cut(s) 26, 60, 181
FatI CATG 1 cut(s) 481
FauI CCCGC 3 cut(s) 41, 52, 174
Fnu4HI GCNGC 6 cut(s) 131, 134, 291, 300, 531, 534
FokI GGATG 5 cut(s) 72, 75, 215, 421, 569
FriOI GRGCYC 2 cut(s) 99, 111
Fsp4HI GCNGC 6 cut(s) 131, 134, 291, 300, 531, 534
FspBI CTAG 2 cut(s) 185, 423
GlaI GCGC 1 cut(s) 271
GluI GCNGC 6 cut(s) 131, 134, 291, 300, 531, 534
HapII CCGG 4 cut(s) 7, 57, 143, 199
HhaI GCGC 1 cut(s) 272
Hin1II CATG 1 cut(s) 485
Hin6I GCGC 1 cut(s) 270
HinP1I GCGC 1 cut(s) 270
HindIII AAGCTT 1 cut(s) 497
HinfI GANTC 3 cut(s) 278, 335, 419
HpaII CCGG 4 cut(s) 7, 57, 143, 199
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 1 cut(s) 517
Hpy188I TCNGA 1 cut(s) 474
Hpy188III TCNNGA 2 cut(s) 57, 92
Hpy8I GTNNAC 1 cut(s) 517
Hpy99I CGWCG 1 cut(s) 75
HpyCH4IV ACGT 2 cut(s) 39, 258
HpyCH4V TGCA 1 cut(s) 349
HpyF10VI GCNNNNNNNGC 6 cut(s) 115, 139, 240, 290, 296, 299
HpyF3I CTNAG 2 cut(s) 462, 473
HpySE526I ACGT 2 cut(s) 39, 258
Hsp92II CATG 1 cut(s) 485
HspAI GCGC 1 cut(s) 270
Kpn2I TCCGGA 1 cut(s) 56
KroI GCCGGC 1 cut(s) 142
KroNI GCCGGC 1 cut(s) 144
LmnI GCTCC 2 cut(s) 182, 215
Lsp1109I GCAGC 3 cut(s) 117, 517, 520
LweI GCATC 2 cut(s) 235, 237
MaeI CTAG 2 cut(s) 185, 423
MaeII ACGT 2 cut(s) 39, 258
MaeIII GTNAC 1 cut(s) 259
MboII GAAGA 2 cut(s) 22, 537
MhlI GDGCHC 2 cut(s) 99, 111
MluCI AATT 1 cut(s) 442
MlyI GAGTC 2 cut(s) 272, 329
MmeI TCCRAC 1 cut(s) 376
MroI TCCGGA 1 cut(s) 56
MroNI GCCGGC 1 cut(s) 142
MspI CCGG 4 cut(s) 7, 57, 143, 199
MspR9I CCNGG 1 cut(s) 199
MvnI CGCG 2 cut(s) 243, 270
MwoI GCNNNNNNNGC 6 cut(s) 115, 139, 240, 290, 296, 299
NaeI GCCGGC 1 cut(s) 144
NciI CCSGG 1 cut(s) 199
NgoMIV GCCGGC 1 cut(s) 142
NlaIII CATG 1 cut(s) 485
NlaIV GGNNCC 2 cut(s) 217, 468
NmeAIII GCCGAG 1 cut(s) 260
NmuCI GTSAC 1 cut(s) 259
NspV TTCGAA 1 cut(s) 204
PdiI GCCGGC 1 cut(s) 144
PfeI GAWTC 1 cut(s) 419
PkrI GCNGC 6 cut(s) 132, 135, 292, 301, 532, 535
PleI GAGTC 2 cut(s) 272, 329
PpsI GAGTC 2 cut(s) 272, 329
PpuMI RGGWCCY 1 cut(s) 352
Psp124BI GAGCTC 1 cut(s) 111
Psp5II RGGWCCY 1 cut(s) 352
PspN4I GGNNCC 2 cut(s) 217, 468
PspPI GGNCC 1 cut(s) 352
PspPPI RGGWCCY 1 cut(s) 352
SacI GAGCTC 1 cut(s) 111
SatI GCNGC 6 cut(s) 131, 134, 291, 300, 531, 534
Sau96I GGNCC 1 cut(s) 352
SchI GAGTC 2 cut(s) 272, 329
ScrFI CCNGG 1 cut(s) 199
SduI GDGCHC 2 cut(s) 99, 111
SfaNI GCATC 2 cut(s) 235, 237
SfcI CTRYAG 1 cut(s) 510
SfuI TTCGAA 1 cut(s) 204
SinI GGWCC 1 cut(s) 352
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 1 cut(s) 442
SspMI CTAG 2 cut(s) 185, 423
SstI GAGCTC 1 cut(s) 111
StyD4I CCNGG 1 cut(s) 197
TaiI ACGT 2 cut(s) 42, 261
TaqI TCGA 4 cut(s) 111, 204, 309, 333
TasI AATT 1 cut(s) 442
TauI GCSGC 3 cut(s) 136, 293, 302
TfiI GAWTC 1 cut(s) 419
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 3 cut(s) 130, 530, 533
Tsp45I GTSAC 1 cut(s) 259
TspGWI ACGGA 2 cut(s) 169, 228
VpaK11BI GGWCC 1 cut(s) 352
XapI RAATTY 1 cut(s) 442
XcmI CCANNNNNNNNNTGG 1 cut(s) 378
XspI CTAG 2 cut(s) 185, 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.