RLG00000006155

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0015289
Physical Location & Seq
Reverse (-)
4799332 .. 4800612
1281 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006155

Sequence Viewer

Length: 618 bp
ATGAACCGCAAGAGAAATAAACCCTACTTCTCTTCCCGCCGCGCCCCCGCCTCCGCATCCAAACGGCGTCGTCCCCTCCCCCCTCACGCGGAGGACCCCGAAGAAGCCGAGCTGGACAAGCCCACTTTCAAGCCGCCGCCGCCGCCCGCTCTGGTCGTAATGGGTCTCCCGCCGGACTCCTCCGTCCTCGACCTCAAGTCCCGCTTCGAGATCTACGGCCCCATCTCCCGCATCCGCATTGATCGCGACGCCGTCGGCCACGTGGCATTCCGCACCGCCGACGCTGCCCAAGCCGCCGTGGAAGCCGCCCTCGACCCCTCCTTCGGCATTACCCTCCACTCCAAAAAGTTACAGGTACTGTGGGCAACAGACCCACTGGCACAGTGGCGGAAAGGAGTTGCGGTGGATGATGCTAATAGGGATTCGAGTAATGAGACATCGTCGTCGTCTTCCTCCAAGCTTTTGAGGGCTGGGATGCCACTGAGAAGTCATGGCAGAGGTAACAAGCTTGCTTCGGCTATAGTCAACCCAAGAGGAGCTCCTGAGAGTTCTGAATCGTCAGTGTTGGAGGTGCCTTCGAGAGCAAGAGAGATTGTGGCTTATGATGACATTCTGTAA

Protein Analysis

206

Amino Acids

22.32

Weight (kDa)

9.73

Isoelectric Point (pI)

62.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 51 - 102 3.6e-06 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015289)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27050
fragaria_vesca FvH4_4g32080
malus_domestica MD13G1079700.v1.1 MD13G1172800.v1.1
prunus_persica Prupe.1G267100_v2.0.a1
pyrus_communis pycom03g02960
rosa_chinensis RchiOBHm_Chr4g0440771
rosa_laevigata RLG00000006155
rosa_roxburghii Rroxscaffold_5G00381530
rosa_rugosa Rorug04G0327800
rosa_samantha Rh4AG379600 Rh4BG392500 Rh4CG407300 Rh4DG386300
rosa_wichuraiana Rw4G032650 Rw4G032680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 182, 442
AccB1I GGYRCC 1 cut(s) 571
AccBSI CCGCTC 1 cut(s) 149
AccII CGCG 3 cut(s) 42, 89, 246
AcoI YGGCCR 1 cut(s) 256
AcvI CACGTG 1 cut(s) 262
AcyI GRCGYC 2 cut(s) 67, 249
AfaI GTAC 1 cut(s) 357
AfiI CCNNNNNNNGG 2 cut(s) 88, 323
AgsI TTSAA 1 cut(s) 130
AhdI GACNNNNNGTC 1 cut(s) 196
AluBI AGCT 4 cut(s) 112, 460, 508, 539
AluI AGCT 4 cut(s) 112, 460, 508, 539
Alw21I GWGCWC 1 cut(s) 541
Alw26I GTCTC 2 cut(s) 170, 428
AlwNI CAGNNNCTG 1 cut(s) 358
AoxI GGCC 2 cut(s) 217, 256
ApeKI GCWGC 1 cut(s) 284
ArsI GACNNNNNNTTYG 2 cut(s) 305, 337
AspLEI GCGC 1 cut(s) 44
AspS9I GGNCC 2 cut(s) 94, 218
AvaII GGWCC 1 cut(s) 94
BanI GGYRCC 1 cut(s) 571
BanII GRGCYC 1 cut(s) 541
BbrPI CACGTG 1 cut(s) 262
BbsI GAAGAC 1 cut(s) 441
Bbv12I GWGCWC 1 cut(s) 541
BbvI GCAGC 1 cut(s) 271
BccI CCATC 1 cut(s) 230
BceAI ACGGC 4 cut(s) 80, 232, 236, 281
BcoDI GTCTC 2 cut(s) 170, 428
BfmI CTRYAG 1 cut(s) 519
BglII AGATCT 1 cut(s) 210
BisI GCNGC 8 cut(s) 40, 134, 137, 140, 143, 285, 294, 306
BlsI GCNGC 8 cut(s) 41, 135, 138, 141, 144, 286, 295, 307
Bme18I GGWCC 1 cut(s) 94
BmeRI GACNNNNNGTC 1 cut(s) 196
BmgT120I GGNCC 2 cut(s) 94, 218
BmiI GGNNCC 3 cut(s) 96, 220, 573
BmsI GCATC 4 cut(s) 65, 240, 400, 465
BpiI GAAGAC 1 cut(s) 441
BpuEI CTTGAG 1 cut(s) 179
BsaAI YACGTR 1 cut(s) 262
BsaHI GRCGYC 2 cut(s) 67, 249
BsaI GGTCTC 1 cut(s) 170
BsaJI CCNNGG 1 cut(s) 297
BsaXI ACNNNNNCTCC 2 cut(s) 387, 417
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 323
Bse1I ACTGG 1 cut(s) 381
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 4 cut(s) 56, 231, 412, 480
BseLI CCNNNNNNNGG 2 cut(s) 88, 323
BseMII CTCAG 2 cut(s) 473, 534
BseNI ACTGG 1 cut(s) 381
BseRI GAGGAG 2 cut(s) 169, 549
BseXI GCAGC 1 cut(s) 271
BseYI CCCAGC 1 cut(s) 470
Bsh1236I CGCG 3 cut(s) 42, 89, 246
BshFI GGCC 2 cut(s) 219, 258
BshNI GGYRCC 1 cut(s) 571
BsiHKAI GWGCWC 1 cut(s) 541
BsiSI CCGG 1 cut(s) 173
BslFI GGGAC 2 cut(s) 57, 184
BslI CCNNNNNNNGG 2 cut(s) 88, 323
BsmAI GTCTC 2 cut(s) 170, 428
BsmFI GGGAC 2 cut(s) 57, 184
BsmI GAATGC 1 cut(s) 266
BsnI GGCC 2 cut(s) 219, 258
Bso31I GGTCTC 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 541
Bsp143I GATC 2 cut(s) 210, 241
Bsp68I TCGCGA 1 cut(s) 246
BspANI GGCC 2 cut(s) 219, 258
BspCNI CTCAG 2 cut(s) 474, 535
BspFNI CGCG 3 cut(s) 42, 89, 246
BspLI GGNNCC 3 cut(s) 96, 220, 573
BspT107I GGYRCC 1 cut(s) 571
BspTNI GGTCTC 1 cut(s) 170
BsrBI CCGCTC 1 cut(s) 149
BsrI ACTGG 1 cut(s) 381
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 2 cut(s) 210, 241
BssNI GRCGYC 2 cut(s) 67, 249
Bst4CI ACNGT 2 cut(s) 360, 384
Bst6I CTCTTC 1 cut(s) 37
BstACI GRCGYC 2 cut(s) 67, 249
BstBAI YACGTR 1 cut(s) 262
BstC8I GCNNGC 2 cut(s) 147, 510
BstDEI CTNAG 2 cut(s) 482, 543
BstDSI CCRYGG 1 cut(s) 297
BstF5I GGATG 4 cut(s) 56, 231, 412, 480
BstFNI CGCG 3 cut(s) 42, 89, 246
BstHHI GCGC 1 cut(s) 44
BstKTI GATC 2 cut(s) 213, 244
BstMAI GTCTC 2 cut(s) 170, 428
BstMBI GATC 2 cut(s) 210, 241
BstMWI GCNNNNNNNGC 8 cut(s) 118, 139, 142, 243, 284, 290, 293, 302
BstSFI CTRYAG 1 cut(s) 519
BstUI CGCG 3 cut(s) 42, 89, 246
BstV1I GCAGC 1 cut(s) 271
BstV2I GAAGAC 1 cut(s) 441
BstX2I RGATCY 1 cut(s) 210
BstYI RGATCY 1 cut(s) 210
BsuRI GGCC 2 cut(s) 219, 258
BtgI CCRYGG 1 cut(s) 297
BtsCI GGATG 4 cut(s) 56, 231, 412, 480
BtsIMutI CAGTG 4 cut(s) 374, 389, 479, 567
BtuMI TCGCGA 1 cut(s) 246
Cac8I GCNNGC 2 cut(s) 147, 510
CaiI CAGNNNCTG 1 cut(s) 358
CfoI GCGC 1 cut(s) 44
Cfr13I GGNCC 2 cut(s) 94, 218
CseI GACGC 3 cut(s) 56, 257, 290
Csp6I GTAC 1 cut(s) 356
CviAII CATG 1 cut(s) 491
CviQI GTAC 1 cut(s) 356
DdeI CTNAG 2 cut(s) 482, 543
DpnI GATC 2 cut(s) 212, 243
DpnII GATC 2 cut(s) 210, 241
DrdI GACNNNNNNGTC 2 cut(s) 182, 442
DriI GACNNNNNGTC 1 cut(s) 196
DseDI GACNNNNNNGTC 2 cut(s) 182, 442
EaeI YGGCCR 1 cut(s) 256
Eam1104I CTCTTC 1 cut(s) 37
Eam1105I GACNNNNNGTC 1 cut(s) 196
EarI CTCTTC 1 cut(s) 37
EciI GGCGGA 1 cut(s) 403
Ecl136II GAGCTC 1 cut(s) 539
Eco24I GRGCYC 1 cut(s) 541
Eco31I GGTCTC 1 cut(s) 170
Eco47I GGWCC 1 cut(s) 94
Eco53kI GAGCTC 1 cut(s) 539
Eco72I CACGTG 1 cut(s) 262
EcoICRI GAGCTC 1 cut(s) 539
EcoO109I RGGNCCY 1 cut(s) 94
EcoT38I GRGCYC 1 cut(s) 541
FaeI CATG 1 cut(s) 494
FaiI YATR 3 cut(s) 492, 521, 603
FalI AAGNNNNNCTT 2 cut(s) 188, 220
FaqI GGGAC 2 cut(s) 57, 184
FatI CATG 1 cut(s) 490
FauI CCCGC 6 cut(s) 44, 55, 154, 177, 209, 236
Fnu4HI GCNGC 8 cut(s) 40, 134, 137, 140, 143, 285, 294, 306
FokI GGATG 4 cut(s) 43, 218, 419, 487
FriOI GRGCYC 1 cut(s) 541
Fsp4HI GCNGC 8 cut(s) 40, 134, 137, 140, 143, 285, 294, 306
GlaI GCGC 1 cut(s) 43
GluI GCNGC 8 cut(s) 40, 134, 137, 140, 143, 285, 294, 306
GsaI CCCAGC 1 cut(s) 474
HaeIII GGCC 2 cut(s) 219, 258
HapII CCGG 1 cut(s) 173
HgaI GACGC 3 cut(s) 56, 257, 290
HhaI GCGC 1 cut(s) 44
Hin1I GRCGYC 2 cut(s) 67, 249
Hin1II CATG 1 cut(s) 494
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HincII GTYRAC 1 cut(s) 526
HindII GTYRAC 1 cut(s) 526
HindIII AAGCTT 2 cut(s) 458, 506
HinfI GANTC 3 cut(s) 176, 422, 554
HpaII CCGG 1 cut(s) 173
Hpy166II GTNNAC 1 cut(s) 526
Hpy188I TCNGA 1 cut(s) 553
Hpy188III TCNNGA 4 cut(s) 208, 245, 542, 579
Hpy8I GTNNAC 1 cut(s) 526
Hpy99I CGWCG 6 cut(s) 72, 251, 257, 284, 445, 448
HpyAV CCTTC 2 cut(s) 331, 585
HpyCH4III ACNGT 2 cut(s) 360, 384
HpyCH4IV ACGT 1 cut(s) 261
HpyF10VI GCNNNNNNNGC 8 cut(s) 118, 139, 142, 243, 284, 290, 293, 302
HpyF3I CTNAG 2 cut(s) 482, 543
HpySE526I ACGT 1 cut(s) 261
Hsp92I GRCGYC 2 cut(s) 67, 249
Hsp92II CATG 1 cut(s) 494
HspAI GCGC 1 cut(s) 42
Kzo9I GATC 2 cut(s) 210, 241
LmnI GCTCC 2 cut(s) 536, 544
LpnPI CCDG 7 cut(s) 98, 137, 186, 338, 362, 456, 555
Lsp1109I GCAGC 1 cut(s) 271
LweI GCATC 4 cut(s) 65, 240, 400, 465
MaeII ACGT 1 cut(s) 261
MaeIII GTNAC 2 cut(s) 348, 500
MalI GATC 2 cut(s) 212, 243
MbiI CCGCTC 1 cut(s) 149
MboI GATC 2 cut(s) 210, 241
MboII GAAGA 3 cut(s) 24, 113, 441
MflI RGATCY 1 cut(s) 210
MhlI GDGCHC 1 cut(s) 541
MlyI GAGTC 1 cut(s) 170
MmeI TCCRAC 1 cut(s) 546
MspI CCGG 1 cut(s) 173
Mva1269I GAATGC 1 cut(s) 266
MvnI CGCG 3 cut(s) 42, 89, 246
MwoI GCNNNNNNNGC 8 cut(s) 118, 139, 142, 243, 284, 290, 293, 302
NdeII GATC 2 cut(s) 210, 241
NlaIII CATG 1 cut(s) 494
NlaIV GGNNCC 3 cut(s) 96, 220, 573
NmeAIII GCCGAG 1 cut(s) 133
NruI TCGCGA 1 cut(s) 246
PctI GAATGC 1 cut(s) 266
PfeI GAWTC 2 cut(s) 422, 554
PflFI GACNNNGTC 2 cut(s) 251, 439
PkrI GCNGC 8 cut(s) 41, 135, 138, 141, 144, 286, 295, 307
PleI GAGTC 1 cut(s) 170
PmaCI CACGTG 1 cut(s) 262
PmlI CACGTG 1 cut(s) 262
PpsI GAGTC 1 cut(s) 170
Ppu21I YACGTR 1 cut(s) 262
PpuMI RGGWCCY 1 cut(s) 94
Psp124BI GAGCTC 1 cut(s) 541
Psp5II RGGWCCY 1 cut(s) 94
PspCI CACGTG 1 cut(s) 262
PspFI CCCAGC 1 cut(s) 470
PspN4I GGNNCC 3 cut(s) 96, 220, 573
PspPI GGNCC 2 cut(s) 94, 218
PspPPI RGGWCCY 1 cut(s) 94
PstNI CAGNNNCTG 1 cut(s) 358
PsuI RGATCY 1 cut(s) 210
PsyI GACNNNGTC 2 cut(s) 251, 439
RruI TCGCGA 1 cut(s) 246
RsaI GTAC 1 cut(s) 357
RsaNI GTAC 1 cut(s) 356
SacI GAGCTC 1 cut(s) 541
SatI GCNGC 8 cut(s) 40, 134, 137, 140, 143, 285, 294, 306
Sau3AI GATC 2 cut(s) 210, 241
Sau96I GGNCC 2 cut(s) 94, 218
SchI GAGTC 1 cut(s) 170
SduI GDGCHC 1 cut(s) 541
SetI ASST 9 cut(s) 114, 195, 264, 357, 462, 502, 510, 541, 573
SfaNI GCATC 4 cut(s) 65, 240, 400, 465
SfcI CTRYAG 1 cut(s) 519
SinI GGWCC 1 cut(s) 94
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
SstI GAGCTC 1 cut(s) 541
TaaI ACNGT 2 cut(s) 360, 384
TaiI ACGT 1 cut(s) 264
TaqI TCGA 5 cut(s) 189, 207, 312, 425, 578
TauI GCSGC 7 cut(s) 42, 136, 139, 142, 145, 296, 308
TfiI GAWTC 2 cut(s) 422, 554
TscAI CASTG 4 cut(s) 381, 389, 486, 567
TseI GCWGC 1 cut(s) 284
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 172
TspRI CASTG 4 cut(s) 381, 389, 486, 567
Tth111I GACNNNGTC 2 cut(s) 251, 439
VpaK11BI GGWCC 1 cut(s) 94
XcmI CCANNNNNNNNNTGG 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.