Polygalacturonase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G10640 AT1G60590 |
| fragaria_vesca | FvH4_4g34120 |
| malus_domestica | MD13G1094100.v1.1 MD16G1095400.v1.1 |
| prunus_persica | Prupe.1G251200_v2.0.a1 |
| pyrus_communis | pycom13g08200 pycom16g08130 |
| rosa_chinensis | RchiOBHm_Chr4g0443631 |
| rosa_laevigata | RLG00000005907 |
| rosa_multiflora | Rmu_co8340541.1_g000001 Rmu_sc0001118.1_g000012 |
| rosa_roxburghii | Rroxscaffold_5G00384180 |
| rosa_samantha | Rh2CG614500 Rh4AG405700 Rh4BG416700 |
| rosa_wichuraiana | Rw4G034830 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 339 |
| AccB1I | GGYRCC | 2 cut(s) | 232, 280 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1076, 1523 |
| AccBSI | CCGCTC | 1 cut(s) | 768 |
| AccI | GTMKAC | 1 cut(s) | 1429 |
| AclWI | GGATC | 3 cut(s) | 208, 1207, 1340 |
| AcoI | YGGCCR | 1 cut(s) | 178 |
| AcsI | RAATTY | 5 cut(s) | 67, 590, 872, 948, 1564 |
| AcuI | CTGAAG | 1 cut(s) | 1266 |
| AdeI | CACNNNGTG | 1 cut(s) | 1057 |
| AfaI | GTAC | 3 cut(s) | 618, 1377, 1466 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 229, 323, 1076, 1479, 1523 |
| AgsI | TTSAA | 7 cut(s) | 138, 590, 820, 1128, 1238, 1253, 1569 |
| AjnI | CCWGG | 4 cut(s) | 560, 885, 922, 1069 |
| AluBI | AGCT | 9 cut(s) | 305, 401, 523, 601, 703, 723, 763, 1316, 1435 |
| AluI | AGCT | 9 cut(s) | 305, 401, 523, 601, 703, 723, 763, 1316, 1435 |
| Alw21I | GWGCWC | 1 cut(s) | 978 |
| Alw26I | GTCTC | 3 cut(s) | 672, 919, 1137 |
| AlwI | GGATC | 3 cut(s) | 208, 1207, 1340 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1208 |
| AoxI | GGCC | 6 cut(s) | 94, 178, 408, 472, 490, 571 |
| ApaI | GGGCCC | 1 cut(s) | 476 |
| ApeKI | GCWGC | 4 cut(s) | 168, 401, 413, 577 |
| ApoI | RAATTY | 5 cut(s) | 67, 590, 872, 948, 1564 |
| AspLEI | GCGC | 1 cut(s) | 544 |
| AspS9I | GGNCC | 7 cut(s) | 326, 408, 472, 473, 491, 898, 1067 |
| AsuHPI | GGTGA | 3 cut(s) | 944, 1327, 1451 |
| AvaII | GGWCC | 3 cut(s) | 326, 898, 1067 |
| BaeGI | GKGCMC | 1 cut(s) | 476 |
| BanI | GGYRCC | 2 cut(s) | 232, 280 |
| BanII | GRGCYC | 1 cut(s) | 476 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1457, 1489 |
| Bbv12I | GWGCWC | 1 cut(s) | 978 |
| BbvI | GCAGC | 4 cut(s) | 180, 388, 400, 564 |
| BccI | CCATC | 9 cut(s) | 226, 244, 292, 485, 521, 632, 873, 938, 1555 |
| BceAI | ACGGC | 3 cut(s) | 178, 385, 1550 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 781, 815 |
| BciT130I | CCWGG | 4 cut(s) | 562, 887, 924, 1071 |
| BcoDI | GTCTC | 3 cut(s) | 672, 919, 1137 |
| BfaI | CTAG | 4 cut(s) | 38, 347, 524, 539 |
| BfmI | CTRYAG | 2 cut(s) | 684, 1387 |
| BfoI | RGCGCY | 1 cut(s) | 545 |
| BisI | GCNGC | 9 cut(s) | 166, 169, 172, 175, 178, 402, 411, 414, 578 |
| BlpI | GCTNAGC | 1 cut(s) | 764 |
| BlsI | GCNGC | 9 cut(s) | 167, 170, 173, 176, 179, 403, 412, 415, 579 |
| Bme1390I | CCNGG | 4 cut(s) | 562, 887, 924, 1071 |
| Bme18I | GGWCC | 3 cut(s) | 326, 898, 1067 |
| BmgT120I | GGNCC | 7 cut(s) | 326, 408, 472, 473, 491, 898, 1067 |
| BmiI | GGNNCC | 6 cut(s) | 234, 282, 327, 328, 474, 475 |
| BmrFI | CCNGG | 4 cut(s) | 562, 887, 924, 1071 |
| BmsI | GCATC | 7 cut(s) | 33, 128, 440, 792, 1022, 1143, 1567 |
| BpmI | CTGGAG | 1 cut(s) | 941 |
| Bpu10I | CCTNAGC | 1 cut(s) | 360 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 764 |
| BsaI | GGTCTC | 1 cut(s) | 672 |
| BsaJI | CCNNGG | 7 cut(s) | 160, 561, 653, 886, 922, 923, 1070 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 882, 912 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 229, 323, 1076, 1479, 1523 |
| Bse118I | RCCGGY | 2 cut(s) | 96, 452 |
| Bse1I | ACTGG | 2 cut(s) | 1033, 1373 |
| Bse3DI | GCAATG | 3 cut(s) | 574, 587, 1442 |
| BseBI | CCWGG | 4 cut(s) | 562, 887, 924, 1071 |
| BseDI | CCNNGG | 7 cut(s) | 160, 561, 653, 886, 922, 923, 1070 |
| BseGI | GGATG | 5 cut(s) | 119, 218, 978, 1037, 1045 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 229, 323, 1076, 1479, 1523 |
| BseMI | GCAATG | 3 cut(s) | 574, 587, 1442 |
| BseMII | CTCAG | 1 cut(s) | 755 |
| BseNI | ACTGG | 2 cut(s) | 1033, 1373 |
| BseSI | GKGCMC | 1 cut(s) | 476 |
| BseXI | GCAGC | 4 cut(s) | 180, 388, 400, 564 |
| BsgI | GTGCAG | 1 cut(s) | 780 |
| BshFI | GGCC | 6 cut(s) | 96, 180, 410, 474, 492, 573 |
| BshNI | GGYRCC | 2 cut(s) | 232, 280 |
| BsiHKAI | GWGCWC | 1 cut(s) | 978 |
| BsiSI | CCGG | 3 cut(s) | 97, 453, 489 |
| BslFI | GGGAC | 5 cut(s) | 312, 904, 918, 941, 1499 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 229, 323, 1076, 1479, 1523 |
| BsmAI | GTCTC | 3 cut(s) | 672, 919, 1137 |
| BsmBI | CGTCTC | 1 cut(s) | 919 |
| BsmFI | GGGAC | 5 cut(s) | 312, 904, 918, 941, 1499 |
| BsmI | GAATGC | 1 cut(s) | 392 |
| BsnI | GGCC | 6 cut(s) | 96, 180, 410, 474, 492, 573 |
| Bso31I | GGTCTC | 1 cut(s) | 672 |
| Bsp120I | GGGCCC | 1 cut(s) | 472 |
| Bsp1286I | GDGCHC | 2 cut(s) | 476, 978 |
| Bsp1407I | TGTACA | 1 cut(s) | 1464 |
| Bsp143I | GATC | 3 cut(s) | 200, 1199, 1332 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 764 |
| BspANI | GGCC | 6 cut(s) | 96, 180, 410, 474, 492, 573 |
| BspCNI | CTCAG | 1 cut(s) | 756 |
| BspHI | TCATGA | 2 cut(s) | 1149, 1573 |
| BspLI | GGNNCC | 6 cut(s) | 234, 282, 327, 328, 474, 475 |
| BspPI | GGATC | 3 cut(s) | 208, 1207, 1340 |
| BspT107I | GGYRCC | 2 cut(s) | 232, 280 |
| BspTNI | GGTCTC | 1 cut(s) | 672 |
| BsrBI | CCGCTC | 1 cut(s) | 768 |
| BsrDI | GCAATG | 3 cut(s) | 574, 587, 1442 |
| BsrFI | RCCGGY | 2 cut(s) | 96, 452 |
| BsrGI | TGTACA | 1 cut(s) | 1464 |
| BsrI | ACTGG | 2 cut(s) | 1033, 1373 |
| BssAI | RCCGGY | 2 cut(s) | 96, 452 |
| BssECI | CCNNGG | 7 cut(s) | 160, 561, 653, 886, 922, 923, 1070 |
| BssMI | GATC | 3 cut(s) | 200, 1199, 1332 |
| BssNAI | GTATAC | 1 cut(s) | 1430 |
| BssT1I | CCWWGG | 1 cut(s) | 653 |
| Bst1107I | GTATAC | 1 cut(s) | 1430 |
| Bst2UI | CCWGG | 4 cut(s) | 562, 887, 924, 1071 |
| Bst4CI | ACNGT | 9 cut(s) | 616, 829, 932, 1013, 1064, 1138, 1283, 1366, 1513 |
| Bst6I | CTCTTC | 2 cut(s) | 85, 637 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 125 |
| BstAUI | TGTACA | 1 cut(s) | 1464 |
| BstC8I | GCNNGC | 7 cut(s) | 79, 98, 575, 740, 761, 1481, 1544 |
| BstDEI | CTNAG | 2 cut(s) | 360, 764 |
| BstDSI | CCRYGG | 1 cut(s) | 160 |
| BstF5I | GGATG | 5 cut(s) | 119, 218, 978, 1037, 1045 |
| BstH2I | RGCGCY | 1 cut(s) | 545 |
| BstHHI | GCGC | 1 cut(s) | 544 |
| BstKTI | GATC | 3 cut(s) | 203, 1202, 1335 |
| BstMAI | GTCTC | 3 cut(s) | 672, 919, 1137 |
| BstMBI | GATC | 3 cut(s) | 200, 1199, 1332 |
| BstNI | CCWGG | 4 cut(s) | 562, 887, 924, 1071 |
| BstNSI | RCATGY | 2 cut(s) | 1122, 1299 |
| BstSCI | CCNGG | 4 cut(s) | 560, 885, 922, 1069 |
| BstSFI | CTRYAG | 2 cut(s) | 684, 1387 |
| BstSLI | GKGCMC | 1 cut(s) | 476 |
| BstV1I | GCAGC | 4 cut(s) | 180, 388, 400, 564 |
| BstZ17I | GTATAC | 1 cut(s) | 1430 |
| BsuRI | GGCC | 6 cut(s) | 96, 180, 410, 474, 492, 573 |
| BtgI | CCRYGG | 1 cut(s) | 160 |
| BtgZI | GCGATG | 1 cut(s) | 270 |
| BtsCI | GGATG | 5 cut(s) | 119, 218, 978, 1037, 1045 |
| BtsI | GCAGTG | 1 cut(s) | 797 |
| BtsIMutI | CAGTG | 1 cut(s) | 797 |
| Cac8I | GCNNGC | 7 cut(s) | 79, 98, 575, 740, 761, 1481, 1544 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1208 |
| CciI | TCATGA | 2 cut(s) | 1149, 1573 |
| CfoI | GCGC | 1 cut(s) | 544 |
| Cfr10I | RCCGGY | 2 cut(s) | 96, 452 |
| Cfr13I | GGNCC | 7 cut(s) | 326, 408, 472, 473, 491, 898, 1067 |
| CseI | GACGC | 2 cut(s) | 83, 901 |
| Csp6I | GTAC | 3 cut(s) | 617, 1376, 1465 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 976, 1011 |
| CviQI | GTAC | 3 cut(s) | 617, 1376, 1465 |
| DdeI | CTNAG | 2 cut(s) | 360, 764 |
| DpnI | GATC | 3 cut(s) | 202, 1201, 1334 |
| DpnII | GATC | 3 cut(s) | 200, 1199, 1332 |
| DraIII | CACNNNGTG | 1 cut(s) | 1057 |
| EaeI | YGGCCR | 1 cut(s) | 178 |
| Eam1104I | CTCTTC | 2 cut(s) | 85, 637 |
| EarI | CTCTTC | 2 cut(s) | 85, 637 |
| Eco130I | CCWWGG | 1 cut(s) | 653 |
| Eco24I | GRGCYC | 1 cut(s) | 476 |
| Eco31I | GGTCTC | 1 cut(s) | 672 |
| Eco47I | GGWCC | 3 cut(s) | 326, 898, 1067 |
| Eco57I | CTGAAG | 1 cut(s) | 1266 |
| EcoO109I | RGGNCCY | 2 cut(s) | 326, 473 |
| EcoRI | GAATTC | 1 cut(s) | 948 |
| EcoRII | CCWGG | 4 cut(s) | 560, 885, 922, 1069 |
| EcoT14I | CCWWGG | 1 cut(s) | 653 |
| EcoT38I | GRGCYC | 1 cut(s) | 476 |
| ErhI | CCWWGG | 1 cut(s) | 653 |
| Esp3I | CGTCTC | 1 cut(s) | 919 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1342, 1374 |
| FaqI | GGGAC | 5 cut(s) | 312, 904, 918, 941, 1499 |
| FauI | CCCGC | 2 cut(s) | 747, 761 |
| FblI | GTMKAC | 1 cut(s) | 1429 |
| Fnu4HI | GCNGC | 9 cut(s) | 166, 169, 172, 175, 178, 402, 411, 414, 578 |
| FokI | GGATG | 5 cut(s) | 106, 205, 965, 1044, 1052 |
| FriOI | GRGCYC | 1 cut(s) | 476 |
| Fsp4HI | GCNGC | 9 cut(s) | 166, 169, 172, 175, 178, 402, 411, 414, 578 |
| FspBI | CTAG | 4 cut(s) | 38, 347, 524, 539 |
| GlaI | GCGC | 1 cut(s) | 543 |
| GluI | GCNGC | 9 cut(s) | 166, 169, 172, 175, 178, 402, 411, 414, 578 |
| GsuI | CTGGAG | 1 cut(s) | 941 |
| HaeII | RGCGCY | 1 cut(s) | 545 |
| HaeIII | GGCC | 6 cut(s) | 96, 180, 410, 474, 492, 573 |
| HapII | CCGG | 3 cut(s) | 97, 453, 489 |
| HgaI | GACGC | 2 cut(s) | 83, 901 |
| HhaI | GCGC | 1 cut(s) | 544 |
| Hin6I | GCGC | 1 cut(s) | 542 |
| HinP1I | GCGC | 1 cut(s) | 542 |
| HinfI | GANTC | 5 cut(s) | 551, 609, 844, 1080, 1179 |
| HpaII | CCGG | 3 cut(s) | 97, 453, 489 |
| HphI | GGTGA | 3 cut(s) | 944, 1327, 1451 |
| Hpy166II | GTNNAC | 5 cut(s) | 1060, 1067, 1378, 1430, 1532 |
| Hpy188I | TCNGA | 5 cut(s) | 20, 849, 1039, 1178, 1246 |
| Hpy188III | TCNNGA | 5 cut(s) | 958, 1142, 1150, 1183, 1574 |
| Hpy8I | GTNNAC | 5 cut(s) | 1060, 1067, 1378, 1430, 1532 |
| Hpy99I | CGWCG | 4 cut(s) | 67, 77, 383, 550 |
| HpyAV | CCTTC | 2 cut(s) | 316, 1483 |
| HpyCH4III | ACNGT | 9 cut(s) | 616, 829, 932, 1013, 1064, 1138, 1283, 1366, 1513 |
| HpyCH4IV | ACGT | 2 cut(s) | 1056, 1487 |
| HpyCH4V | TGCA | 8 cut(s) | 47, 81, 404, 580, 797, 1156, 1299, 1447 |
| HpyF3I | CTNAG | 2 cut(s) | 360, 764 |
| HpySE526I | ACGT | 2 cut(s) | 1056, 1487 |
| HspAI | GCGC | 1 cut(s) | 542 |
| KflI | GGGWCCC | 1 cut(s) | 326 |
| KroI | GCCGGC | 1 cut(s) | 96 |
| KroNI | GCCGGC | 1 cut(s) | 98 |
| Kzo9I | GATC | 3 cut(s) | 200, 1199, 1332 |
| LmnI | GCTCC | 1 cut(s) | 310 |
| Lsp1109I | GCAGC | 4 cut(s) | 180, 388, 400, 564 |
| LweI | GCATC | 7 cut(s) | 33, 128, 440, 792, 1022, 1143, 1567 |
| MaeI | CTAG | 4 cut(s) | 38, 347, 524, 539 |
| MaeII | ACGT | 2 cut(s) | 1056, 1487 |
| MaeIII | GTNAC | 7 cut(s) | 248, 365, 823, 829, 1283, 1391, 1414 |
| MalI | GATC | 3 cut(s) | 202, 1201, 1334 |
| MbiI | CCGCTC | 1 cut(s) | 768 |
| MboI | GATC | 3 cut(s) | 200, 1199, 1332 |
| MboII | GAAGA | 2 cut(s) | 102, 654 |
| MhlI | GDGCHC | 2 cut(s) | 476, 978 |
| MluCI | AATT | 7 cut(s) | 42, 67, 590, 872, 948, 1274, 1564 |
| MlyI | GAGTC | 2 cut(s) | 545, 1188 |
| MmeI | TCCRAC | 1 cut(s) | 754 |
| MroNI | GCCGGC | 1 cut(s) | 96 |
| MslI | CAYNNNNRTG | 2 cut(s) | 32, 1151 |
| MspA1I | CMGCKG | 4 cut(s) | 171, 192, 413, 1316 |
| MspI | CCGG | 3 cut(s) | 97, 453, 489 |
| MspR9I | CCNGG | 4 cut(s) | 562, 887, 924, 1071 |
| Mva1269I | GAATGC | 1 cut(s) | 392 |
| MvaI | CCWGG | 4 cut(s) | 562, 887, 924, 1071 |
| NaeI | GCCGGC | 1 cut(s) | 98 |
| NdeII | GATC | 3 cut(s) | 200, 1199, 1332 |
| NgoMIV | GCCGGC | 1 cut(s) | 96 |
| NlaIV | GGNNCC | 6 cut(s) | 234, 282, 327, 328, 474, 475 |
| NmuCI | GTSAC | 3 cut(s) | 823, 1283, 1391 |
| NspI | RCATGY | 2 cut(s) | 1122, 1299 |
| PagI | TCATGA | 2 cut(s) | 1149, 1573 |
| PasI | CCCWGGG | 1 cut(s) | 923 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 375 |
| PctI | GAATGC | 1 cut(s) | 392 |
| PdiI | GCCGGC | 1 cut(s) | 98 |
| PfeI | GAWTC | 3 cut(s) | 609, 844, 1080 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1076, 1523 |
| PkrI | GCNGC | 9 cut(s) | 167, 170, 173, 176, 179, 403, 412, 415, 579 |
| PleI | GAGTC | 2 cut(s) | 545, 1187 |
| PpsI | GAGTC | 2 cut(s) | 545, 1187 |
| PpuMI | RGGWCCY | 1 cut(s) | 326 |
| PsiI | TTATAA | 1 cut(s) | 339 |
| Psp5II | RGGWCCY | 1 cut(s) | 326 |
| Psp6I | CCWGG | 4 cut(s) | 560, 885, 922, 1069 |
| PspGI | CCWGG | 4 cut(s) | 560, 885, 922, 1069 |
| PspN4I | GGNNCC | 6 cut(s) | 234, 282, 327, 328, 474, 475 |
| PspOMI | GGGCCC | 1 cut(s) | 472 |
| PspPI | GGNCC | 7 cut(s) | 326, 408, 472, 473, 491, 898, 1067 |
| PspPPI | RGGWCCY | 1 cut(s) | 326 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1208 |
| PvuII | CAGCTG | 1 cut(s) | 1316 |
| RsaI | GTAC | 3 cut(s) | 618, 1377, 1466 |
| RsaNI | GTAC | 3 cut(s) | 617, 1376, 1465 |
| RseI | CAYNNNNRTG | 2 cut(s) | 32, 1151 |
| SatI | GCNGC | 9 cut(s) | 166, 169, 172, 175, 178, 402, 411, 414, 578 |
| Sau3AI | GATC | 3 cut(s) | 200, 1199, 1332 |
| Sau96I | GGNCC | 7 cut(s) | 326, 408, 472, 473, 491, 898, 1067 |
| SchI | GAGTC | 2 cut(s) | 545, 1188 |
| ScrFI | CCNGG | 4 cut(s) | 562, 887, 924, 1071 |
| SduI | GDGCHC | 2 cut(s) | 476, 978 |
| SfaNI | GCATC | 7 cut(s) | 33, 128, 440, 792, 1022, 1143, 1567 |
| SfcI | CTRYAG | 2 cut(s) | 684, 1387 |
| SinI | GGWCC | 3 cut(s) | 326, 898, 1067 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 32, 1151 |
| Sse9I | AATT | 7 cut(s) | 42, 67, 590, 872, 948, 1274, 1564 |
| SspMI | CTAG | 4 cut(s) | 38, 347, 524, 539 |
| StyD4I | CCNGG | 4 cut(s) | 560, 885, 922, 1069 |
| StyI | CCWWGG | 1 cut(s) | 653 |
| TaaI | ACNGT | 9 cut(s) | 616, 829, 932, 1013, 1064, 1138, 1283, 1366, 1513 |
| TaiI | ACGT | 2 cut(s) | 1059, 1490 |
| TaqI | TCGA | 5 cut(s) | 65, 72, 426, 876, 1141 |
| TasI | AATT | 7 cut(s) | 42, 67, 590, 872, 948, 1274, 1564 |
| TatI | WGTACW | 3 cut(s) | 616, 1375, 1464 |
| TauI | GCSGC | 5 cut(s) | 168, 174, 177, 180, 413 |
| TfiI | GAWTC | 3 cut(s) | 609, 844, 1080 |
| TscAI | CASTG | 1 cut(s) | 804 |
| TseFI | GTSAC | 3 cut(s) | 823, 1283, 1391 |
| TseI | GCWGC | 4 cut(s) | 168, 401, 413, 577 |
| Tsp45I | GTSAC | 3 cut(s) | 823, 1283, 1391 |
| TspDTI | ATGAA | 2 cut(s) | 22, 1181 |
| TspGWI | ACGGA | 2 cut(s) | 563, 621 |
| TspRI | CASTG | 1 cut(s) | 804 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1076, 1523 |
| VpaK11BI | GGWCC | 3 cut(s) | 326, 898, 1067 |
| XapI | RAATTY | 5 cut(s) | 67, 590, 872, 948, 1564 |
| XceI | RCATGY | 2 cut(s) | 1122, 1299 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 194 |
| XmiI | GTMKAC | 1 cut(s) | 1429 |
| XspI | CTAG | 4 cut(s) | 38, 347, 524, 539 |