Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0014720

Physical Location & Seq

Genomic Coordinates Reverse (-)

9725015 .. 9727336

Gene Structure 2322 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1128900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGTTTCGCAGGAAGAAGAGAAGCTCGCCAAACAGATGAGCAAAAACAGAGCAAATAAACAGAGCAAAGTTGCTGCTGCAGATAAAGAGGTCCAATTCCAAAGAGATGGGGTTCGTGTGAAAGCAAGAAGGGGTCAAGCAACTAATAGTCACAGCCTTGCTGAAAGGGCAAGAAGGGAGAAAATCAGTACGAGAATGAAACTTTTGCAGTCCCTTGTTCCTGGTTGTGATCAGATAACTGGCAAGGCTCAGATATTGGACGAGATCATCAAATACGTCCAGTTACTGCAGAATCAAGTCGAGTGCCTCTCTGCGCAGCTTGCTTCGGTGGATCTCATGCTGTACATCTGCGAGCTGAACCAAAGTGCAAATCCATCTGCTTCCGAGACCATGTTGCTTGGAACCTCAATTTTCGTCTGCGCTAGAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

144

Amino Acids

15.9

Weight (kDa)

9.33

Isoelectric Point (pI)

48.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	49 - 97	1.3e-08	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	55 - 99	1.6e-08	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014720)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22890 FvH4_4g22890
malus_domestica	MD13G1128900.v1.1
prunus_persica	Prupe.1G217700_v2.0.a1 Prupe.1G217700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0429161
rosa_laevigata	RLG00000007093
rosa_multiflora	Rmu_sc0000846.1_g000009
rosa_roxburghii	Rroxscaffold_5G00370810
rosa_rugosa	Rorug04G0233300 Rorug04G0233400 Rorug04G0233500
rosa_samantha	Rh4AG289300 Rh4BG295300 Rh4CG310900 Rh4DG292300
rosa_wichuraiana	Rw4G025070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	315
AclWI	GGATC	1 cut(s)	339
AfaI	GTAC	2 cut(s)	190, 344
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	3 cut(s)	25, 319, 355
AluI	AGCT	3 cut(s)	25, 319, 355
Alw26I	GTCTC	1 cut(s)	380
AlwI	GGATC	1 cut(s)	339
AlwNI	CAGNNNCTG	1 cut(s)	286
ApeKI	GCWGC	3 cut(s)	74, 77, 316
AspLEI	GCGC	2 cut(s)	316, 422
AspS9I	GGNCC	1 cut(s)	91
AvaII	GGWCC	1 cut(s)	91
BbvI	GCAGC	3 cut(s)	61, 64, 328
BccI	CCATC	2 cut(s)	101, 382
BciT130I	CCWGG	1 cut(s)	222
BclI	TGATCA	1 cut(s)	229
BcoDI	GTCTC	1 cut(s)	380
BfaI	CTAG	2 cut(s)	423, 430
BfmI	CTRYAG	2 cut(s)	78, 287
BisI	GCNGC	3 cut(s)	75, 78, 317
BlsI	GCNGC	3 cut(s)	76, 79, 318
Bme1390I	CCNGG	1 cut(s)	222
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	1 cut(s)	91
BmiI	GGNNCC	1 cut(s)	403
BmrFI	CCNGG	1 cut(s)	222
BplI	GAGNNNNNCTC	2 cut(s)	293, 325
BsaI	GGTCTC	1 cut(s)	380
Bse1I	ACTGG	2 cut(s)	244, 280
BseBI	CCWGG	1 cut(s)	222
BseMII	CTCAG	1 cut(s)	263
BseNI	ACTGG	2 cut(s)	244, 280
BseXI	GCAGC	3 cut(s)	61, 64, 328
BslFI	GGGAC	1 cut(s)	196
BsmAI	GTCTC	1 cut(s)	380
BsmFI	GGGAC	1 cut(s)	196
Bso31I	GGTCTC	1 cut(s)	380
Bsp1407I	TGTACA	1 cut(s)	342
Bsp143I	GATC	3 cut(s)	229, 264, 331
BspCNI	CTCAG	1 cut(s)	262
BspLI	GGNNCC	1 cut(s)	403
BspMAI	CTGCAG	2 cut(s)	82, 291
BspPI	GGATC	1 cut(s)	339
BspTNI	GGTCTC	1 cut(s)	380
BsrGI	TGTACA	1 cut(s)	342
BsrI	ACTGG	2 cut(s)	244, 280
BssMI	GATC	3 cut(s)	229, 264, 331
Bst2UI	CCWGG	1 cut(s)	222
Bst6I	CTCTTC	1 cut(s)	12
BstAUI	TGTACA	1 cut(s)	342
BstC8I	GCNNGC	3 cut(s)	27, 321, 353
BstDEI	CTNAG	1 cut(s)	249
BstHHI	GCGC	2 cut(s)	316, 422
BstKTI	GATC	3 cut(s)	232, 267, 334
BstMAI	GTCTC	1 cut(s)	380
BstMBI	GATC	3 cut(s)	229, 264, 331
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 320
BstNI	CCWGG	1 cut(s)	222
BstSCI	CCNGG	1 cut(s)	220
BstSFI	CTRYAG	2 cut(s)	78, 287
BstV1I	GCAGC	3 cut(s)	61, 64, 328
BstX2I	RGATCY	1 cut(s)	331
BstXI	CCANNNNNNTGG	1 cut(s)	107
BstYI	RGATCY	1 cut(s)	331
Cac8I	GCNNGC	3 cut(s)	27, 321, 353
CaiI	CAGNNNCTG	1 cut(s)	286
CfoI	GCGC	2 cut(s)	316, 422
Cfr13I	GGNCC	1 cut(s)	91
Csp6I	GTAC	2 cut(s)	189, 343
CviAII	CATG	2 cut(s)	337, 391
CviJI	RGCY	6 cut(s)	25, 156, 248, 319, 355, 428
CviKI_1	RGCY	6 cut(s)	25, 156, 248, 319, 355, 428
CviQI	GTAC	2 cut(s)	189, 343
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	3 cut(s)	231, 266, 333
DpnII	GATC	3 cut(s)	229, 264, 331
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Eco31I	GGTCTC	1 cut(s)	380
Eco47I	GGWCC	1 cut(s)	91
EcoRII	CCWGG	1 cut(s)	220
FaeI	CATG	2 cut(s)	340, 394
FaiI	YATR	2 cut(s)	338, 392
FaqI	GGGAC	1 cut(s)	196
FatI	CATG	2 cut(s)	336, 390
FbaI	TGATCA	1 cut(s)	229
Fnu4HI	GCNGC	3 cut(s)	75, 78, 317
Fsp4HI	GCNGC	3 cut(s)	75, 78, 317
FspBI	CTAG	2 cut(s)	423, 430
FspI	TGCGCA	1 cut(s)	315
GlaI	GCGC	2 cut(s)	315, 421
GluI	GCNGC	3 cut(s)	75, 78, 317
HhaI	GCGC	2 cut(s)	316, 422
Hin1II	CATG	2 cut(s)	340, 394
Hin6I	GCGC	2 cut(s)	314, 420
HinP1I	GCGC	2 cut(s)	314, 420
HinfI	GANTC	1 cut(s)	292
Hpy188I	TCNGA	3 cut(s)	234, 252, 385
HpyAV	CCTTC	2 cut(s)	123, 168
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	4 cut(s)	80, 208, 289, 368
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 320
HpyF3I	CTNAG	1 cut(s)	249
HpySE526I	ACGT	1 cut(s)	276
Hsp92II	CATG	2 cut(s)	340, 394
HspAI	GCGC	2 cut(s)	314, 420
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	3 cut(s)	229, 264, 331
LpnPI	CCDG	4 cut(s)	207, 225, 234, 293
Lsp1109I	GCAGC	3 cut(s)	61, 64, 328
MaeI	CTAG	2 cut(s)	423, 430
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	2 cut(s)	149, 282
MalI	GATC	3 cut(s)	231, 266, 333
MboI	GATC	3 cut(s)	229, 264, 331
MboII	GAAGA	2 cut(s)	26, 29
MflI	RGATCY	1 cut(s)	331
MluCI	AATT	2 cut(s)	95, 408
MnlI	CCTC	3 cut(s)	82, 317, 415
MspR9I	CCNGG	1 cut(s)	222
MvaI	CCWGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	2 cut(s)	167, 320
NdeII	GATC	3 cut(s)	229, 264, 331
NlaIII	CATG	2 cut(s)	340, 394
NlaIV	GGNNCC	1 cut(s)	403
NmuCI	GTSAC	1 cut(s)	149
NsbI	TGCGCA	1 cut(s)	315
PfeI	GAWTC	1 cut(s)	292
PkrI	GCNGC	3 cut(s)	76, 79, 318
Psp6I	CCWGG	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	220
PspN4I	GGNNCC	1 cut(s)	403
PspPI	GGNCC	1 cut(s)	91
PstI	CTGCAG	2 cut(s)	82, 291
PstNI	CAGNNNCTG	1 cut(s)	286
PsuI	RGATCY	1 cut(s)	331
RsaI	GTAC	2 cut(s)	190, 344
RsaNI	GTAC	2 cut(s)	189, 343
SatI	GCNGC	3 cut(s)	75, 78, 317
Sau3AI	GATC	3 cut(s)	229, 264, 331
Sau96I	GGNCC	1 cut(s)	91
ScrFI	CCNGG	1 cut(s)	222
SetI	ASST	6 cut(s)	27, 93, 279, 321, 357, 407
SfcI	CTRYAG	2 cut(s)	78, 287
SinI	GGWCC	1 cut(s)	91
Sse9I	AATT	2 cut(s)	95, 408
SspMI	CTAG	2 cut(s)	423, 430
StyD4I	CCNGG	1 cut(s)	220
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	1 cut(s)	300
TasI	AATT	2 cut(s)	95, 408
TatI	WGTACW	1 cut(s)	342
TfiI	GAWTC	1 cut(s)	292
TseFI	GTSAC	1 cut(s)	149
TseI	GCWGC	3 cut(s)	74, 77, 316
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	91
XspI	CTAG	2 cut(s)	423, 430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.