Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0014720

Physical Location & Seq

Genomic Coordinates Reverse (-)

13522377 .. 13523594

Gene Structure 1218 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007093

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGAGCATCAATTGAAGGAGCTGAAGGGGAAGAGAAGCAAAGTTCCTGCTGAAGGAGTCGAAACAGAAGATTTTGTTCGTGTCAAGACAAGAAGGGGTGAAGCAACCGACAGTCACAGCCTTGCGGAAAGGGCAAGAAGAGCGCAAATCCGTATGAGAATGAAACTCTTGCAATCTCTTGTTCCTGGATGCGATAAGATAACAGGAAAGGCTCATATACTGGATGAGATCATCAAATATGTTCAATTGCTACAGAATCAAGTAGAGTCCCTTGCGGCAAAGCTTGCTTTTGTGGATCTCATGCTATACGACTGTGAGCCGAATCCAAGCGGAAATGCATGTGTTCCTGAGATGATATATATTCTGTCCCAGGGGCTGTTGCCGTCTGTGCCAGAGTCTAGCTCTATCCCGTTCATGTCTTTTGCAGACTGTGGGGTAAGCGATTCTGCTTCCCTTTTGGTCACAGAGGATCAGATAGCTACTCTAATTCCTCAGTATGGTAGAGATGTGTTATTGGACATGGAAGACCAGCCTGAAGCTATTAGAAAACTTGTGCATTTTCTAAGCTCCGCCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

193

Amino Acids

21.34

Weight (kDa)

5.43

Isoelectric Point (pI)

52.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	38 - 85	5.9e-08	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	43 - 90	1.2e-06	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014720)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22890 FvH4_4g22890
malus_domestica	MD13G1128900.v1.1
prunus_persica	Prupe.1G217700_v2.0.a1 Prupe.1G217700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0429161
rosa_laevigata	RLG00000007093
rosa_multiflora	Rmu_sc0000846.1_g000009
rosa_roxburghii	Rroxscaffold_5G00370810
rosa_rugosa	Rorug04G0233300 Rorug04G0233400 Rorug04G0233500
rosa_samantha	Rh4AG289300 Rh4BG295300 Rh4CG310900 Rh4DG292300
rosa_wichuraiana	Rw4G025070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	125, 275, 330, 570
AclWI	GGATC	2 cut(s)	303, 477
AcuI	CTGAAG	3 cut(s)	44, 72, 555
AfiI	CCNNNNNNNGG	2 cut(s)	53, 497
AgsI	TTSAA	2 cut(s)	16, 245
AjnI	CCWGG	2 cut(s)	184, 369
AluBI	AGCT	6 cut(s)	22, 283, 402, 479, 539, 567
AluI	AGCT	6 cut(s)	22, 283, 402, 479, 539, 567
AlwI	GGATC	2 cut(s)	303, 477
AlwNI	CAGNNNCTG	1 cut(s)	376
AspLEI	GCGC	1 cut(s)	145
AsuHPI	GGTGA	1 cut(s)	110
BbsI	GAAGAC	1 cut(s)	531
BceAI	ACGGC	1 cut(s)	367
BciT130I	CCWGG	2 cut(s)	186, 371
BfaI	CTAG	1 cut(s)	399
BfmI	CTRYAG	1 cut(s)	251
BisI	GCNGC	1 cut(s)	276
BlsI	GCNGC	1 cut(s)	277
Bme1390I	CCNGG	2 cut(s)	186, 371
BmrFI	CCNGG	2 cut(s)	186, 371
BmsI	GCATC	2 cut(s)	16, 179
BpiI	GAAGAC	1 cut(s)	531
BplI	GAGNNNNNCTC	2 cut(s)	386, 418
BsaJI	CCNNGG	2 cut(s)	369, 370
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 497
Bse1I	ACTGG	1 cut(s)	225
BseBI	CCWGG	2 cut(s)	186, 371
BseDI	CCNNGG	2 cut(s)	369, 370
BseGI	GGATG	2 cut(s)	194, 229
BseLI	CCNNNNNNNGG	2 cut(s)	53, 497
BseMII	CTCAG	2 cut(s)	339, 506
BseNI	ACTGG	1 cut(s)	225
BslFI	GGGAC	2 cut(s)	253, 352
BslI	CCNNNNNNNGG	2 cut(s)	53, 497
BsmFI	GGGAC	2 cut(s)	253, 352
Bsp143I	GATC	3 cut(s)	228, 295, 469
BspACI	CCGC	4 cut(s)	125, 275, 330, 570
BspCNI	CTCAG	2 cut(s)	340, 505
BspPI	GGATC	2 cut(s)	303, 477
BspQI	GCTCTTC	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	225
BssECI	CCNNGG	2 cut(s)	369, 370
BssMI	GATC	3 cut(s)	228, 295, 469
Bst2UI	CCWGG	2 cut(s)	186, 371
Bst4CI	ACNGT	3 cut(s)	113, 314, 431
Bst6I	CTCTTC	2 cut(s)	26, 133
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstC8I	GCNNGC	1 cut(s)	285
BstDEI	CTNAG	3 cut(s)	348, 492, 563
BstENI	CCTNNNNNAGG	1 cut(s)	51
BstF5I	GGATG	2 cut(s)	194, 229
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	3 cut(s)	231, 298, 472
BstMBI	GATC	3 cut(s)	228, 295, 469
BstMWI	GCNNNNNNNGC	4 cut(s)	131, 140, 284, 388
BstNI	CCWGG	2 cut(s)	186, 371
BstNSI	RCATGY	1 cut(s)	342
BstSCI	CCNGG	2 cut(s)	184, 369
BstSFI	CTRYAG	1 cut(s)	251
BstV2I	GAAGAC	1 cut(s)	531
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
BtsCI	GGATG	2 cut(s)	194, 229
Cac8I	GCNNGC	1 cut(s)	285
CaiI	CAGNNNCTG	1 cut(s)	376
CfoI	GCGC	1 cut(s)	145
CviAII	CATG	4 cut(s)	301, 339, 415, 520
DdeI	CTNAG	3 cut(s)	348, 492, 563
DpnI	GATC	3 cut(s)	230, 297, 471
DpnII	GATC	3 cut(s)	228, 295, 469
Eam1104I	CTCTTC	2 cut(s)	26, 133
EarI	CTCTTC	2 cut(s)	26, 133
EciI	GGCGGA	1 cut(s)	559
Eco57I	CTGAAG	3 cut(s)	44, 72, 555
EcoNI	CCTNNNNNAGG	1 cut(s)	51
EcoRII	CCWGG	2 cut(s)	184, 369
EcoT22I	ATGCAT	1 cut(s)	340
FaeI	CATG	4 cut(s)	304, 342, 418, 523
FaqI	GGGAC	2 cut(s)	253, 352
FatI	CATG	4 cut(s)	300, 338, 414, 519
Fnu4HI	GCNGC	1 cut(s)	276
FokI	GGATG	2 cut(s)	201, 236
Fsp4HI	GCNGC	1 cut(s)	276
FspBI	CTAG	1 cut(s)	399
GlaI	GCGC	1 cut(s)	144
GluI	GCNGC	1 cut(s)	276
HhaI	GCGC	1 cut(s)	145
Hin1II	CATG	4 cut(s)	304, 342, 418, 523
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HindIII	AAGCTT	1 cut(s)	281
HinfI	GANTC	6 cut(s)	57, 256, 266, 322, 395, 443
HphI	GGTGA	1 cut(s)	110
Hpy188I	TCNGA	1 cut(s)	474
Hpy188III	TCNNGA	2 cut(s)	85, 347
HpyAV	CCTTC	4 cut(s)	10, 19, 47, 87
HpyCH4III	ACNGT	3 cut(s)	113, 314, 431
HpyCH4V	TGCA	4 cut(s)	172, 338, 425, 556
HpyF10VI	GCNNNNNNNGC	4 cut(s)	131, 140, 284, 388
HpyF3I	CTNAG	3 cut(s)	348, 492, 563
Hsp92II	CATG	4 cut(s)	304, 342, 418, 523
HspAI	GCGC	1 cut(s)	143
Kzo9I	GATC	3 cut(s)	228, 295, 469
LguI	GCTCTTC	1 cut(s)	133
LmnI	GCTCC	3 cut(s)	4, 19, 572
LweI	GCATC	2 cut(s)	16, 179
MaeI	CTAG	1 cut(s)	399
MaeIII	GTNAC	2 cut(s)	113, 460
MalI	GATC	3 cut(s)	230, 297, 471
MboI	GATC	3 cut(s)	228, 295, 469
MboII	GAAGA	4 cut(s)	43, 80, 150, 536
MfeI	CAATTG	2 cut(s)	11, 245
MflI	RGATCY	1 cut(s)	295
MluCI	AATT	4 cut(s)	11, 245, 486, 574
MlyI	GAGTC	3 cut(s)	66, 275, 404
MnlI	CCTC	2 cut(s)	460, 501
Mph1103I	ATGCAT	1 cut(s)	340
MspR9I	CCNGG	2 cut(s)	186, 371
MunI	CAATTG	2 cut(s)	11, 245
MvaI	CCWGG	2 cut(s)	186, 371
MwoI	GCNNNNNNNGC	4 cut(s)	131, 140, 284, 388
NdeII	GATC	3 cut(s)	228, 295, 469
NlaIII	CATG	4 cut(s)	304, 342, 418, 523
NmuCI	GTSAC	2 cut(s)	113, 460
NsiI	ATGCAT	1 cut(s)	340
NspI	RCATGY	1 cut(s)	342
PasI	CCCWGGG	1 cut(s)	370
PciSI	GCTCTTC	1 cut(s)	133
PfeI	GAWTC	3 cut(s)	256, 322, 443
PfoI	TCCNGGA	1 cut(s)	184
PkrI	GCNGC	1 cut(s)	277
PleI	GAGTC	3 cut(s)	65, 274, 403
PpsI	GAGTC	3 cut(s)	65, 274, 403
Psp6I	CCWGG	2 cut(s)	184, 369
PspGI	CCWGG	2 cut(s)	184, 369
PstNI	CAGNNNCTG	1 cut(s)	376
PsuI	RGATCY	1 cut(s)	295
SapI	GCTCTTC	1 cut(s)	133
SatI	GCNGC	1 cut(s)	276
Sau3AI	GATC	3 cut(s)	228, 295, 469
SchI	GAGTC	3 cut(s)	66, 275, 404
ScrFI	CCNGG	2 cut(s)	186, 371
SetI	ASST	6 cut(s)	24, 285, 404, 481, 541, 569
SfaNI	GCATC	2 cut(s)	16, 179
SfcI	CTRYAG	1 cut(s)	251
Sse9I	AATT	4 cut(s)	11, 245, 486, 574
SsiI	CCGC	4 cut(s)	125, 275, 330, 570
SspMI	CTAG	1 cut(s)	399
StyD4I	CCNGG	2 cut(s)	184, 369
TaaI	ACNGT	3 cut(s)	113, 314, 431
TaqI	TCGA	1 cut(s)	60
TasI	AATT	4 cut(s)	11, 245, 486, 574
TauI	GCSGC	1 cut(s)	278
TfiI	GAWTC	3 cut(s)	256, 322, 443
TseFI	GTSAC	2 cut(s)	113, 460
Tsp45I	GTSAC	2 cut(s)	113, 460
TspDTI	ATGAA	2 cut(s)	176, 403
TspGWI	ACGGA	1 cut(s)	140
XagI	CCTNNNNNAGG	1 cut(s)	51
XceI	RCATGY	1 cut(s)	342
XspI	CTAG	1 cut(s)	399
Zsp2I	ATGCAT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.