Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000846.1

Orthogroup ID

OG0014720

Physical Location & Seq

Genomic Coordinates Reverse (-)

34058 .. 35081

Gene Structure 1024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000846.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atgatcagccgtaacttagagcagaaaagaacaggaagcgaaaatggtaatcgggagcatcaattgaaggagctgatggggaagaggagcagactttctgctgaaggagtcgcaacagaagattatgttcgtgtcaaggcaaggaggggtgaagcaaccgacagtcacagtctagcggaaagggcaagaagagcgcaaatccgaatgagaatgaaactcttgcaatcacttgttcctggatgcgataagataactggaaaggctcatatactggatgagattatcaaatatgttcaattgctacagaatcaagtagaggtaagatcccttgcggcaaagcttgcttttgtggatctcatgctatacgactgtgagccgaatccaagcggaaatgcatgtgttcctgagctctatcccgttcatgtcttttgcagacggtggggtaagccattctgcttcccttttgctcaaagaggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

159

Amino Acids

18.14

Weight (kDa)

9.59

Isoelectric Point (pI)

57.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014720)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22890 FvH4_4g22890
malus_domestica	MD13G1128900.v1.1
prunus_persica	Prupe.1G217700_v2.0.a1 Prupe.1G217700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0429161
rosa_laevigata	RLG00000007093
rosa_multiflora	Rmu_sc0000846.1_g000009
rosa_roxburghii	Rroxscaffold_5G00370810
rosa_rugosa	Rorug04G0233300 Rorug04G0233400 Rorug04G0233500
rosa_samantha	Rh4AG289300 Rh4BG295300 Rh4CG310900 Rh4DG292300
rosa_wichuraiana	Rw4G025070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	176, 332, 387
AclWI	GGATC	2 cut(s)	318, 360
AcuI	CTGAAG	1 cut(s)	123
AgsI	TTSAA	2 cut(s)	67, 296
AjnI	CCWGG	1 cut(s)	235
AluBI	AGCT	3 cut(s)	73, 340, 409
AluI	AGCT	3 cut(s)	73, 340, 409
Alw21I	GWGCWC	1 cut(s)	411
AlwI	GGATC	2 cut(s)	318, 360
AspLEI	GCGC	1 cut(s)	196
AsuHPI	GGTGA	1 cut(s)	161
BanII	GRGCYC	1 cut(s)	411
Bbv12I	GWGCWC	1 cut(s)	411
BccI	CCATC	1 cut(s)	70
BciT130I	CCWGG	1 cut(s)	237
BclI	TGATCA	1 cut(s)	3
BfaI	CTAG	1 cut(s)	173
BfmI	CTRYAG	1 cut(s)	302
BisI	GCNGC	1 cut(s)	333
BlsI	GCNGC	1 cut(s)	334
Bme1390I	CCNGG	1 cut(s)	237
BmrFI	CCNGG	1 cut(s)	237
BmsI	GCATC	2 cut(s)	67, 230
Bpu10I	CCTNAGC	1 cut(s)	405
Bse1I	ACTGG	2 cut(s)	259, 276
BseBI	CCWGG	1 cut(s)	237
BseGI	GGATG	2 cut(s)	245, 280
BseMII	CTCAG	1 cut(s)	396
BseNI	ACTGG	2 cut(s)	259, 276
BseRI	GAGGAG	1 cut(s)	100
BsiHKAI	GWGCWC	1 cut(s)	411
Bsp1286I	GDGCHC	1 cut(s)	411
Bsp143I	GATC	3 cut(s)	3, 323, 352
BspACI	CCGC	3 cut(s)	176, 332, 387
BspCNI	CTCAG	1 cut(s)	397
BspPI	GGATC	2 cut(s)	318, 360
BspQI	GCTCTTC	1 cut(s)	184
BsrI	ACTGG	2 cut(s)	259, 276
BssMI	GATC	3 cut(s)	3, 323, 352
Bst2UI	CCWGG	1 cut(s)	237
Bst4CI	ACNGT	4 cut(s)	164, 170, 371, 438
Bst6I	CTCTTC	2 cut(s)	77, 184
BstAPI	GCANNNNNTGC	1 cut(s)	341
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	2 cut(s)	16, 405
BstF5I	GGATG	2 cut(s)	245, 280
BstHHI	GCGC	1 cut(s)	196
BstKTI	GATC	3 cut(s)	6, 326, 355
BstMBI	GATC	3 cut(s)	3, 323, 352
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 191, 341
BstNI	CCWGG	1 cut(s)	237
BstNSI	RCATGY	1 cut(s)	399
BstSCI	CCNGG	1 cut(s)	235
BstSFI	CTRYAG	1 cut(s)	302
BstX2I	RGATCY	2 cut(s)	323, 352
BstYI	RGATCY	2 cut(s)	323, 352
BtsCI	GGATG	2 cut(s)	245, 280
Cac8I	GCNNGC	1 cut(s)	342
CfoI	GCGC	1 cut(s)	196
CviAII	CATG	3 cut(s)	358, 396, 422
CviJI	RGCY	7 cut(s)	9, 73, 263, 340, 376, 409, 448
CviKI_1	RGCY	7 cut(s)	9, 73, 263, 340, 376, 409, 448
DdeI	CTNAG	2 cut(s)	16, 405
DpnI	GATC	3 cut(s)	5, 325, 354
DpnII	GATC	3 cut(s)	3, 323, 352
Eam1104I	CTCTTC	2 cut(s)	77, 184
EarI	CTCTTC	2 cut(s)	77, 184
Ecl136II	GAGCTC	1 cut(s)	409
Eco24I	GRGCYC	1 cut(s)	411
Eco53kI	GAGCTC	1 cut(s)	409
Eco57I	CTGAAG	1 cut(s)	123
EcoICRI	GAGCTC	1 cut(s)	409
EcoRII	CCWGG	1 cut(s)	235
EcoT22I	ATGCAT	1 cut(s)	397
EcoT38I	GRGCYC	1 cut(s)	411
FaeI	CATG	3 cut(s)	361, 399, 425
FaiI	YATR	8 cut(s)	126, 267, 269, 291, 359, 364, 397, 423
FatI	CATG	3 cut(s)	357, 395, 421
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	333
FokI	GGATG	2 cut(s)	252, 287
FriOI	GRGCYC	1 cut(s)	411
Fsp4HI	GCNGC	1 cut(s)	333
FspBI	CTAG	1 cut(s)	173
GlaI	GCGC	1 cut(s)	195
GluI	GCNGC	1 cut(s)	333
HhaI	GCGC	1 cut(s)	196
Hin1II	CATG	3 cut(s)	361, 399, 425
Hin6I	GCGC	1 cut(s)	194
HinP1I	GCGC	1 cut(s)	194
HindIII	AAGCTT	1 cut(s)	338
HinfI	GANTC	3 cut(s)	108, 307, 379
HphI	GGTGA	1 cut(s)	161
Hpy188I	TCNGA	1 cut(s)	203
Hpy188III	TCNNGA	2 cut(s)	53, 404
HpyAV	CCTTC	2 cut(s)	61, 98
HpyCH4III	ACNGT	4 cut(s)	164, 170, 371, 438
HpyCH4V	TGCA	3 cut(s)	223, 395, 432
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 191, 341
HpyF3I	CTNAG	2 cut(s)	16, 405
Hsp92II	CATG	3 cut(s)	361, 399, 425
HspAI	GCGC	1 cut(s)	194
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 323, 352
LguI	GCTCTTC	1 cut(s)	184
LmnI	GCTCC	3 cut(s)	55, 70, 87
LpnPI	CCDG	6 cut(s)	18, 222, 240, 249, 257, 417
LweI	GCATC	2 cut(s)	67, 230
MaeI	CTAG	1 cut(s)	173
MaeIII	GTNAC	2 cut(s)	11, 164
MalI	GATC	3 cut(s)	5, 325, 354
MboI	GATC	3 cut(s)	3, 323, 352
MboII	GAAGA	3 cut(s)	94, 131, 201
MfeI	CAATTG	2 cut(s)	62, 296
MflI	RGATCY	2 cut(s)	323, 352
MhlI	GDGCHC	1 cut(s)	411
MluCI	AATT	2 cut(s)	62, 296
MlyI	GAGTC	1 cut(s)	117
MnlI	CCTC	4 cut(s)	78, 138, 310, 467
Mph1103I	ATGCAT	1 cut(s)	397
MspR9I	CCNGG	1 cut(s)	237
MunI	CAATTG	2 cut(s)	62, 296
MvaI	CCWGG	1 cut(s)	237
MwoI	GCNNNNNNNGC	3 cut(s)	182, 191, 341
NdeII	GATC	3 cut(s)	3, 323, 352
NlaIII	CATG	3 cut(s)	361, 399, 425
NmuCI	GTSAC	1 cut(s)	164
NsiI	ATGCAT	1 cut(s)	397
NspI	RCATGY	1 cut(s)	399
PciSI	GCTCTTC	1 cut(s)	184
PfeI	GAWTC	2 cut(s)	307, 379
PfoI	TCCNGGA	1 cut(s)	235
PkrI	GCNGC	1 cut(s)	334
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
Psp124BI	GAGCTC	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	235
PspGI	CCWGG	1 cut(s)	235
PsuI	RGATCY	2 cut(s)	323, 352
SacI	GAGCTC	1 cut(s)	411
SapI	GCTCTTC	1 cut(s)	184
SatI	GCNGC	1 cut(s)	333
Sau3AI	GATC	3 cut(s)	3, 323, 352
SchI	GAGTC	1 cut(s)	117
ScrFI	CCNGG	1 cut(s)	237
SduI	GDGCHC	1 cut(s)	411
SetI	ASST	4 cut(s)	75, 321, 342, 411
SfaNI	GCATC	2 cut(s)	67, 230
SfcI	CTRYAG	1 cut(s)	302
Sse9I	AATT	2 cut(s)	62, 296
SsiI	CCGC	3 cut(s)	176, 332, 387
SspMI	CTAG	1 cut(s)	173
SstI	GAGCTC	1 cut(s)	411
StyD4I	CCNGG	1 cut(s)	235
TaaI	ACNGT	4 cut(s)	164, 170, 371, 438
TasI	AATT	2 cut(s)	62, 296
TauI	GCSGC	1 cut(s)	335
TfiI	GAWTC	2 cut(s)	307, 379
TseFI	GTSAC	1 cut(s)	164
Tsp45I	GTSAC	1 cut(s)	164
TspDTI	ATGAA	2 cut(s)	227, 410
XceI	RCATGY	1 cut(s)	399
XspI	CTAG	1 cut(s)	173
Zsp2I	ATGCAT	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.