Rorug04G0233300

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0014720
Physical Location & Seq
Reverse (-)
39839966 .. 39844324
4359 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0233300.1

Sequence Viewer

Length: 1218 bp
ATGGGGATTTCTTTCAGCAGCAACCGAAGACGTAACAACTACTACCAACACCCGCCACCGCCTCAGCCCCTCTACCTCTCCAATCCTCACTACTACCCCTCCGACCCACCTTCTTTCTCTCCGCCGCCGCCGCCGCCTCCTCCGCCGCCGGTGACATCTTTCTCTTCCTCCTCCTCCCCCTCCTCTTCTTCTTCCGCCACCTACCCAGAACCCAATTCCGCCACCCCTTACGCAGCGCCTCCGCCGCCGCCGACCAGGGCTCCATACCAGGGCTACCCTCTTCCGCCGCCGCCGCCGCAGTCGCATTACTGCTATGGTCAGTACAATTCTTGCAACCACGCGAATCCGATGATGGGTCGGTTCAGTTACAACCACAATTACCAGCCTTACTATGGTAATCAGGCGAGTGGGTGGCCGGCGATGCGGCCTCCGGTGGCCCCCCTGTATCCTCCGCCGCCGTACGTGGAGCACCAGAGTGCCAAGAAGGTGAAGAATGACGTCAACGTGCGTAAGGACACGTTGAGGCTTGAGATTGATGAGCAGAACCCTGATCAGCATTTGGTCTCGTTCGTTTTCGATGCCTTGTATGATGGGAGCATTACTATTCTCTACTTTGCCAAGGAAGAGGCAGATTGTACATTTGTTCCACTATTTCCTGAAGCATTTACGCCGGTGCAAGTCCCTTTTCAGAAAGGAGTAGGCCAGAAATTTTGTCAGCCCTCAGGAACAGGCATCGATTTAGGCTTCTTTGAGTTGGATGATCTGTCAAAACCCTCACCTGGAGAAGATGTATTCCCACTTGTAATATCTGCGGAAACACGTACGCCGCCTGATTCAATCGACCATATTGGTGAGCCTGTCCAAGATGCATCTCCTCGTATGCAGATCACTCAAGCTGTGCTAGAAAAGAATAATGGTGACCCCTTCCAAGTGAAAGTAATTAAGCAGATACTGTGGATTGATGAAGTTCGCTATGAACTACGTGAGATATATGGAATTGCAACCTCAGCAGTGGAAGGCTTTGATGACAATGACCCTGGGAAGGAGTGTGTAATATGCATGACCGAACCGAAGGACACTGCTGTATTACCTTGTCGACATATGTGTATGTGCAGTGACTGTGCAAAAGAATTGAGGATTCAATCCAATAAATGCCCCATTTGCCGACAACCCATTGAAGAACTTATAGAGATAAAGATGAATAAAAGTCAGCAATGA

Protein Analysis

405

Amino Acids

45.24

Weight (kDa)

5.24

Isoelectric Point (pI)

71.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNF157-like_N PF26192 167 - 327 1.6e-70 RNF157-like N-terminal domain
zf-C3HC4_3 PF13920 348 - 394 8.7e-18 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 349 - 389 1.6e-07 Ring finger domain
Prok-RING_4 PF14447 350 - 393 2.7e-06 Prokaryotic RING finger family 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014720)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g22890 FvH4_4g22890
malus_domestica MD13G1128900.v1.1
prunus_persica Prupe.1G217700_v2.0.a1 Prupe.1G217700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0429161
rosa_laevigata RLG00000007093
rosa_multiflora Rmu_sc0000846.1_g000009
rosa_roxburghii Rroxscaffold_5G00370810
rosa_rugosa Rorug04G0233300 Rorug04G0233400 Rorug04G0233500
rosa_samantha Rh4AG289300 Rh4BG295300 Rh4CG310900 Rh4DG292300
rosa_wichuraiana Rw4G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 501
AccI GTMKAC 1 cut(s) 1096
AccII CGCG 1 cut(s) 341
AcoI YGGCCR 1 cut(s) 413
AcsI RAATTY 1 cut(s) 707
AcuI CTGAAG 1 cut(s) 678
AcyI GRCGYC 1 cut(s) 498
AfaI GTAC 4 cut(s) 323, 461, 637, 823
AfiI CCNNNNNNNGG 5 cut(s) 269, 353, 392, 779, 1042
AflIII ACRYGT 2 cut(s) 516, 818
AgsI TTSAA 3 cut(s) 837, 1142, 1178
AjnI CCWGG 4 cut(s) 254, 267, 778, 1036
AleI CACNNNNGTG 1 cut(s) 474
AluBI AGCT 1 cut(s) 896
AluI AGCT 1 cut(s) 896
Alw21I GWGCWC 1 cut(s) 471
Alw26I GTCTC 1 cut(s) 568
AlwNI CAGNNNCTG 2 cut(s) 952, 1119
AoxI GGCC 4 cut(s) 413, 425, 435, 700
ApeKI GCWGC 2 cut(s) 18, 233
ApoI RAATTY 1 cut(s) 707
AspLEI GCGC 1 cut(s) 238
AspS9I GGNCC 1 cut(s) 436
AsuHPI GGTGA 5 cut(s) 163, 499, 768, 863, 929
AxyI CCTNAGG 1 cut(s) 721
BanII GRGCYC 1 cut(s) 262
BbsI GAAGAC 1 cut(s) 34
Bbv12I GWGCWC 1 cut(s) 471
BbvCI CCTCAGC 2 cut(s) 63, 1006
BbvI GCAGC 2 cut(s) 30, 245
BccI CCATC 2 cut(s) 346, 584
BceAI ACGGC 1 cut(s) 442
BciT130I CCWGG 4 cut(s) 256, 269, 780, 1038
BciVI GTATCC 1 cut(s) 456
BclI TGATCA 1 cut(s) 550
BcoDI GTCTC 1 cut(s) 568
BfaI CTAG 1 cut(s) 902
BfoI RGCGCY 1 cut(s) 239
BfuI GTATCC 1 cut(s) 456
Bme1390I CCNGG 4 cut(s) 256, 269, 780, 1038
BmgT120I GGNCC 1 cut(s) 436
BmiI GGNNCC 2 cut(s) 261, 438
BmrFI CCNGG 4 cut(s) 256, 269, 780, 1038
BmsI GCATC 5 cut(s) 411, 568, 741, 856, 878
BpiI GAAGAC 1 cut(s) 34
BpmI CTGGAG 1 cut(s) 801
Bpu10I CCTNAGC 2 cut(s) 63, 1006
BpuEI CTTGAG 2 cut(s) 548, 876
Bsa29I ATCGAT 1 cut(s) 735
BsaAI YACGTR 3 cut(s) 463, 821, 983
BsaHI GRCGYC 1 cut(s) 498
BsaI GGTCTC 1 cut(s) 568
BsaJI CCNNGG 5 cut(s) 255, 268, 618, 1036, 1037
BsaWI WCCGGW 1 cut(s) 430
BsaXI ACNNNNNCTCC 6 cut(s) 83, 113, 244, 274, 774, 804
Bsc4I CCNNNNNNNGG 5 cut(s) 269, 353, 392, 779, 1042
Bse118I RCCGGY 3 cut(s) 148, 415, 670
Bse21I CCTNAGG 1 cut(s) 721
BseBI CCWGG 4 cut(s) 256, 269, 780, 1038
BseCI ATCGAT 1 cut(s) 735
BseDI CCNNGG 5 cut(s) 255, 268, 618, 1036, 1037
BseGI GGATG 1 cut(s) 763
BseLI CCNNNNNNNGG 5 cut(s) 269, 353, 392, 779, 1042
BseMII CTCAG 3 cut(s) 77, 735, 1020
BseRI GAGGAG 5 cut(s) 129, 160, 163, 172, 864
BseXI GCAGC 2 cut(s) 30, 245
BsgI GTGCAG 1 cut(s) 1132
Bsh1236I CGCG 1 cut(s) 341
BshFI GGCC 4 cut(s) 415, 427, 437, 702
BshVI ATCGAT 1 cut(s) 735
BsiHKAI GWGCWC 1 cut(s) 471
BsiSI CCGG 4 cut(s) 149, 416, 431, 671
BsiWI CGTACG 2 cut(s) 459, 821
BslFI GGGAC 1 cut(s) 665
BslI CCNNNNNNNGG 5 cut(s) 269, 353, 392, 779, 1042
BsmAI GTCTC 1 cut(s) 568
BsmFI GGGAC 1 cut(s) 665
BsnI GGCC 4 cut(s) 415, 427, 437, 702
Bso31I GGTCTC 1 cut(s) 568
Bsp1286I GDGCHC 2 cut(s) 262, 471
Bsp1407I TGTACA 1 cut(s) 635
Bsp143I GATC 3 cut(s) 550, 760, 885
BspANI GGCC 4 cut(s) 415, 427, 437, 702
BspCNI CTCAG 3 cut(s) 76, 734, 1019
BspDI ATCGAT 1 cut(s) 735
BspFNI CGCG 1 cut(s) 341
BspLI GGNNCC 2 cut(s) 261, 438
BspTNI GGTCTC 1 cut(s) 568
BsrFI RCCGGY 3 cut(s) 148, 415, 670
BsrGI TGTACA 1 cut(s) 635
BssAI RCCGGY 3 cut(s) 148, 415, 670
BssECI CCNNGG 5 cut(s) 255, 268, 618, 1036, 1037
BssMI GATC 3 cut(s) 550, 760, 885
BssNI GRCGYC 1 cut(s) 498
BssT1I CCWWGG 1 cut(s) 618
Bst2UI CCWGG 4 cut(s) 256, 269, 780, 1038
Bst4CI ACNGT 2 cut(s) 954, 1121
Bst6I CTCTTC 4 cut(s) 169, 190, 285, 618
BstACI GRCGYC 1 cut(s) 498
BstAUI TGTACA 1 cut(s) 635
BstBAI YACGTR 3 cut(s) 463, 821, 983
BstC8I GCNNGC 1 cut(s) 417
BstDEI CTNAG 3 cut(s) 63, 721, 1006
BstEII GGTNACC 1 cut(s) 917
BstF5I GGATG 1 cut(s) 763
BstFNI CGCG 1 cut(s) 341
BstH2I RGCGCY 1 cut(s) 239
BstHHI GCGC 1 cut(s) 238
BstKTI GATC 3 cut(s) 553, 763, 888
BstMAI GTCTC 1 cut(s) 568
BstMBI GATC 3 cut(s) 550, 760, 885
BstNI CCWGG 4 cut(s) 256, 269, 780, 1038
BstPI GGTNACC 1 cut(s) 917
BstSCI CCNGG 4 cut(s) 254, 267, 778, 1036
BstUI CGCG 1 cut(s) 341
BstV1I GCAGC 2 cut(s) 30, 245
BstV2I GAAGAC 1 cut(s) 34
Bsu15I ATCGAT 1 cut(s) 735
Bsu36I CCTNAGG 1 cut(s) 721
BsuI GTATCC 1 cut(s) 456
BsuRI GGCC 4 cut(s) 415, 427, 437, 702
BsuTUI ATCGAT 1 cut(s) 735
BtgZI GCGATG 1 cut(s) 434
BtsCI GGATG 1 cut(s) 763
BtsI GCAGTG 3 cut(s) 1017, 1077, 1120
BtsIMutI CAGTG 3 cut(s) 1017, 1077, 1120
Cac8I GCNNGC 1 cut(s) 417
CaiI CAGNNNCTG 2 cut(s) 952, 1119
CfoI GCGC 1 cut(s) 238
Cfr10I RCCGGY 3 cut(s) 148, 415, 670
Cfr13I GGNCC 1 cut(s) 436
ClaI ATCGAT 1 cut(s) 735
Csp6I GTAC 4 cut(s) 322, 460, 636, 822
CviAII CATG 1 cut(s) 1060
CviQI GTAC 4 cut(s) 322, 460, 636, 822
DdeI CTNAG 3 cut(s) 63, 721, 1006
DpnI GATC 3 cut(s) 552, 762, 887
DpnII GATC 3 cut(s) 550, 760, 885
EaeI YGGCCR 1 cut(s) 413
Eam1104I CTCTTC 4 cut(s) 169, 190, 285, 618
EarI CTCTTC 4 cut(s) 169, 190, 285, 618
EciI GGCGGA 7 cut(s) 111, 132, 184, 208, 231, 273, 441
Eco130I CCWWGG 1 cut(s) 618
Eco24I GRGCYC 1 cut(s) 262
Eco31I GGTCTC 1 cut(s) 568
Eco57I CTGAAG 1 cut(s) 678
Eco81I CCTNAGG 1 cut(s) 721
Eco91I GGTNACC 1 cut(s) 917
EcoO65I GGTNACC 1 cut(s) 917
EcoRII CCWGG 4 cut(s) 254, 267, 778, 1036
EcoT14I CCWWGG 1 cut(s) 618
EcoT22I ATGCAT 2 cut(s) 871, 1061
EcoT38I GRGCYC 1 cut(s) 262
ErhI CCWWGG 1 cut(s) 618
FaeI CATG 1 cut(s) 1063
FaqI GGGAC 1 cut(s) 665
FatI CATG 1 cut(s) 1059
FauI CCCGC 1 cut(s) 60
FauNDI CATATG 1 cut(s) 1101
FbaI TGATCA 1 cut(s) 550
FblI GTMKAC 1 cut(s) 1096
FokI GGATG 1 cut(s) 770
FriOI GRGCYC 1 cut(s) 262
FspBI CTAG 1 cut(s) 902
GlaI GCGC 1 cut(s) 237
GsuI CTGGAG 1 cut(s) 801
HaeII RGCGCY 1 cut(s) 239
HaeIII GGCC 4 cut(s) 415, 427, 437, 702
HapII CCGG 4 cut(s) 149, 416, 431, 671
HhaI GCGC 1 cut(s) 238
Hin1I GRCGYC 1 cut(s) 498
Hin1II CATG 1 cut(s) 1063
Hin6I GCGC 1 cut(s) 236
HinP1I GCGC 1 cut(s) 236
HincII GTYRAC 2 cut(s) 502, 1097
HindII GTYRAC 2 cut(s) 502, 1097
HinfI GANTC 3 cut(s) 343, 833, 1138
HpaII CCGG 4 cut(s) 149, 416, 431, 671
HphI GGTGA 5 cut(s) 163, 499, 768, 863, 929
Hpy166II GTNNAC 2 cut(s) 502, 1097
Hpy188I TCNGA 3 cut(s) 103, 348, 690
Hpy188III TCNNGA 2 cut(s) 656, 723
Hpy8I GTNNAC 2 cut(s) 502, 1097
HpyAV CCTTC 6 cut(s) 120, 478, 934, 1010, 1036, 1066
HpyCH4III ACNGT 2 cut(s) 954, 1121
HpyCH4IV ACGT 7 cut(s) 31, 462, 498, 504, 518, 820, 982
HpyCH4V TGCA 8 cut(s) 333, 676, 869, 883, 1001, 1059, 1113, 1124
HpyF3I CTNAG 3 cut(s) 63, 721, 1006
HpySE526I ACGT 7 cut(s) 31, 462, 498, 504, 518, 820, 982
Hsp92I GRCGYC 1 cut(s) 498
Hsp92II CATG 1 cut(s) 1063
HspAI GCGC 1 cut(s) 236
KroI GCCGGC 1 cut(s) 415
KroNI GCCGGC 1 cut(s) 417
Ksp22I TGATCA 1 cut(s) 550
Kzo9I GATC 3 cut(s) 550, 760, 885
LmnI GCTCC 3 cut(s) 265, 466, 594
Lsp1109I GCAGC 2 cut(s) 30, 245
LweI GCATC 5 cut(s) 411, 568, 741, 856, 878
MaeI CTAG 1 cut(s) 902
MaeII ACGT 7 cut(s) 31, 462, 498, 504, 518, 820, 982
MaeIII GTNAC 5 cut(s) 32, 151, 365, 917, 1115
MalI GATC 3 cut(s) 552, 762, 887
MboI GATC 3 cut(s) 550, 760, 885
MhlI GDGCHC 2 cut(s) 262, 471
MluCI AATT 7 cut(s) 214, 325, 376, 707, 939, 996, 1130
MmeI TCCRAC 2 cut(s) 126, 735
Mph1103I ATGCAT 2 cut(s) 871, 1061
MroNI GCCGGC 1 cut(s) 415
MseI TTAA 1 cut(s) 942
MslI CAYNNNNRTG 2 cut(s) 474, 849
MspI CCGG 4 cut(s) 149, 416, 431, 671
MspR9I CCNGG 4 cut(s) 256, 269, 780, 1038
MvaI CCWGG 4 cut(s) 256, 269, 780, 1038
MvnI CGCG 1 cut(s) 341
NaeI GCCGGC 1 cut(s) 417
NdeI CATATG 1 cut(s) 1101
NdeII GATC 3 cut(s) 550, 760, 885
NgoMIV GCCGGC 1 cut(s) 415
NlaIII CATG 1 cut(s) 1063
NlaIV GGNNCC 2 cut(s) 261, 438
NmuCI GTSAC 3 cut(s) 151, 917, 1115
NsiI ATGCAT 2 cut(s) 871, 1061
OliI CACNNNNGTG 1 cut(s) 474
PasI CCCWGGG 1 cut(s) 1037
PdiI GCCGGC 1 cut(s) 417
PfeI GAWTC 3 cut(s) 343, 833, 1138
Pfl23II CGTACG 2 cut(s) 459, 821
Ppu21I YACGTR 3 cut(s) 463, 821, 983
Psp6I CCWGG 4 cut(s) 254, 267, 778, 1036
PspEI GGTNACC 1 cut(s) 917
PspGI CCWGG 4 cut(s) 254, 267, 778, 1036
PspLI CGTACG 2 cut(s) 459, 821
PspN4I GGNNCC 2 cut(s) 261, 438
PspPI GGNCC 1 cut(s) 436
PstNI CAGNNNCTG 2 cut(s) 952, 1119
RsaI GTAC 4 cut(s) 323, 461, 637, 823
RsaNI GTAC 4 cut(s) 322, 460, 636, 822
RseI CAYNNNNRTG 2 cut(s) 474, 849
SalI GTCGAC 1 cut(s) 1095
SaqAI TTAA 1 cut(s) 942
Sau3AI GATC 3 cut(s) 550, 760, 885
Sau96I GGNCC 1 cut(s) 436
ScrFI CCNGG 4 cut(s) 256, 269, 780, 1038
SduI GDGCHC 2 cut(s) 262, 471
SfaNI GCATC 5 cut(s) 411, 568, 741, 856, 878
SgrAI CRCCGGYG 2 cut(s) 148, 670
SmiMI CAYNNNNRTG 2 cut(s) 474, 849
SmlI CTYRAG 2 cut(s) 527, 891
SmoI CTYRAG 2 cut(s) 527, 891
Sse9I AATT 7 cut(s) 214, 325, 376, 707, 939, 996, 1130
SspMI CTAG 1 cut(s) 902
StyD4I CCNGG 4 cut(s) 254, 267, 778, 1036
StyI CCWWGG 1 cut(s) 618
TaaI ACNGT 2 cut(s) 954, 1121
TaiI ACGT 7 cut(s) 34, 465, 501, 507, 521, 823, 985
TaqI TCGA 4 cut(s) 576, 735, 840, 1096
TaqII GACCGA 1 cut(s) 1079
TasI AATT 7 cut(s) 214, 325, 376, 707, 939, 996, 1130
TatI WGTACW 2 cut(s) 321, 635
TfiI GAWTC 3 cut(s) 343, 833, 1138
Tru1I TTAA 1 cut(s) 942
Tru9I TTAA 1 cut(s) 942
TscAI CASTG 3 cut(s) 1017, 1084, 1120
TseFI GTSAC 3 cut(s) 151, 917, 1115
TseI GCWGC 2 cut(s) 18, 233
Tsp45I GTSAC 3 cut(s) 151, 917, 1115
TspDTI ATGAA 3 cut(s) 978, 990, 1214
TspRI CASTG 3 cut(s) 1017, 1084, 1120
XapI RAATTY 1 cut(s) 707
XcmI CCANNNNNNNNNTGG 1 cut(s) 389
XmiI GTMKAC 1 cut(s) 1096
XspI CTAG 1 cut(s) 902
ZraI GACGTC 1 cut(s) 499
Zsp2I ATGCAT 2 cut(s) 871, 1061
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.