Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0014720

Physical Location & Seq

Genomic Coordinates Forward (+)

23073009 .. 23075208

Gene Structure 2200 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G217700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGTTTCTGAGGAAGAAGGAGAGCGCAAAGGGAAGAAACAAAGGAAGCAGAATGGGAGTGAAGCAAAGAAACAGAGCAAAGTTGCTGCTGCTTTTGCTGAAAGGGTCCAAAGAAATGGCGTCCGTGTGAAAGCACGAAGGGGTGAAGCAACTGACAGTCACAGCCTTGCTGAAAGGGCAAGAAGAGAGAAAATCAATGTGAGAATGAAACTTTTGCAGTCTCTTGTTCCTGGTTGTGATCAGATAAATGGCAAGGCTCATGCACTGGATGAGATCATCAAATATGTTCAATTACTACAGAATCAAGTTGAGTGCCTTGCAGCAGAGCTTGCTTTTGTGGATGCCATGCTATATGATGACTGTGAGCTGAACCCAAGTACAAATCCATGTGCTTCAGATCAGAGACTATGTTGCTTGGAGCCTCCTAGCTCCGTCCCGTTCCGGTCTTTGGCAGACGCTGCACCAACGCCGTGTACTTTCGCTTCCTTATTACTCACAGAGGATCAGAAAGCCAGCTTAATCCCTCAGGTTCAGGATGGTGGAAGCTTTGAGGACGTTGGAAAGCATCCTGCTAGATTAGACCACTCGTGCACCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

200

Amino Acids

21.91

Weight (kDa)

6.89

Isoelectric Point (pI)

52.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014720)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22890 FvH4_4g22890
malus_domestica	MD13G1128900.v1.1
prunus_persica	Prupe.1G217700_v2.0.a1 Prupe.1G217700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0429161
rosa_laevigata	RLG00000007093
rosa_multiflora	Rmu_sc0000846.1_g000009
rosa_roxburghii	Rroxscaffold_5G00370810
rosa_rugosa	Rorug04G0233300 Rorug04G0233400 Rorug04G0233500
rosa_samantha	Rh4AG289300 Rh4BG295300 Rh4CG310900 Rh4DG292300
rosa_wichuraiana	Rw4G025070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	510
AcuI	CTGAAG	1 cut(s)	378
AcyI	GRCGYC	1 cut(s)	120
AfaI	GTAC	2 cut(s)	379, 475
AfiI	CCNNNNNNNGG	1 cut(s)	448
AgsI	TTSAA	1 cut(s)	290
AjnI	CCWGG	1 cut(s)	229
AluBI	AGCT	5 cut(s)	328, 367, 429, 516, 546
AluI	AGCT	5 cut(s)	328, 367, 429, 516, 546
Alw21I	GWGCWC	1 cut(s)	593
Alw26I	GTCTC	2 cut(s)	225, 397
Alw44I	GTGCAC	1 cut(s)	589
AlwI	GGATC	1 cut(s)	510
AlwNI	CAGNNNCTG	1 cut(s)	458
ApaLI	GTGCAC	1 cut(s)	589
ApeKI	GCWGC	4 cut(s)	86, 89, 320, 458
AspLEI	GCGC	1 cut(s)	27
AspS9I	GGNCC	1 cut(s)	106
AsuHPI	GGTGA	1 cut(s)	155
AvaII	GGWCC	1 cut(s)	106
AxyI	CCTNAGG	1 cut(s)	525
BaeGI	GKGCMC	1 cut(s)	593
BarI	GAAGNNNNNNTAC	2 cut(s)	466, 498
BauI	CACGAG	1 cut(s)	586
Bbv12I	GWGCWC	1 cut(s)	593
BbvI	GCAGC	4 cut(s)	73, 76, 332, 445
BccI	CCATC	1 cut(s)	530
BceAI	ACGGC	1 cut(s)	454
BciT130I	CCWGG	1 cut(s)	231
BclI	TGATCA	1 cut(s)	238
BcoDI	GTCTC	2 cut(s)	225, 397
BfaI	CTAG	2 cut(s)	426, 573
BfmI	CTRYAG	1 cut(s)	296
BisI	GCNGC	4 cut(s)	87, 90, 321, 459
BlsI	GCNGC	4 cut(s)	88, 91, 322, 460
Bme1390I	CCNGG	1 cut(s)	231
Bme18I	GGWCC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	2 cut(s)	107, 420
BmrFI	CCNGG	1 cut(s)	231
BmsI	GCATC	2 cut(s)	331, 574
BsaHI	GRCGYC	1 cut(s)	120
BsaWI	WCCGGW	1 cut(s)	441
Bsc4I	CCNNNNNNNGG	1 cut(s)	448
Bse1I	ACTGG	1 cut(s)	270
Bse21I	CCTNAGG	1 cut(s)	525
BseBI	CCWGG	1 cut(s)	231
BseGI	GGATG	4 cut(s)	274, 346, 541, 565
BseLI	CCNNNNNNNGG	1 cut(s)	448
BseMII	CTCAG	1 cut(s)	539
BseNI	ACTGG	1 cut(s)	270
BseSI	GKGCMC	1 cut(s)	593
BseXI	GCAGC	4 cut(s)	73, 76, 332, 445
BsgI	GTGCAG	1 cut(s)	444
BsiHKAI	GWGCWC	1 cut(s)	593
BsiSI	CCGG	1 cut(s)	442
BslFI	GGGAC	1 cut(s)	419
BslI	CCNNNNNNNGG	1 cut(s)	448
BsmAI	GTCTC	2 cut(s)	225, 397
BsmFI	GGGAC	1 cut(s)	419
Bsp1286I	GDGCHC	1 cut(s)	593
Bsp143I	GATC	4 cut(s)	238, 273, 397, 502
BspCNI	CTCAG	1 cut(s)	538
BspLI	GGNNCC	2 cut(s)	107, 420
BspPI	GGATC	1 cut(s)	510
BsrI	ACTGG	1 cut(s)	270
BssMI	GATC	4 cut(s)	238, 273, 397, 502
BssNI	GRCGYC	1 cut(s)	120
BssSI	CACGAG	1 cut(s)	586
Bst2BI	CACGAG	1 cut(s)	586
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	2 cut(s)	158, 362
Bst6I	CTCTTC	1 cut(s)	178
BstACI	GRCGYC	1 cut(s)	120
BstAPI	GCANNNNNTGC	2 cut(s)	329, 458
BstC8I	GCNNGC	2 cut(s)	330, 514
BstDEI	CTNAG	2 cut(s)	9, 525
BstF5I	GGATG	4 cut(s)	274, 346, 541, 565
BstHHI	GCGC	1 cut(s)	27
BstKTI	GATC	4 cut(s)	241, 276, 400, 505
BstMAI	GTCTC	2 cut(s)	225, 397
BstMBI	GATC	4 cut(s)	238, 273, 397, 502
BstMWI	GCNNNNNNNGC	4 cut(s)	95, 176, 329, 458
BstNI	CCWGG	1 cut(s)	231
BstSCI	CCNGG	1 cut(s)	229
BstSFI	CTRYAG	1 cut(s)	296
BstSLI	GKGCMC	1 cut(s)	593
BstV1I	GCAGC	4 cut(s)	73, 76, 332, 445
BstXI	CCANNNNNNTGG	1 cut(s)	116
Bsu36I	CCTNAGG	1 cut(s)	525
BtsCI	GGATG	4 cut(s)	274, 346, 541, 565
BtsIMutI	CAGTG	1 cut(s)	263
Cac8I	GCNNGC	2 cut(s)	330, 514
CaiI	CAGNNNCTG	1 cut(s)	458
CfoI	GCGC	1 cut(s)	27
Cfr13I	GGNCC	1 cut(s)	106
CseI	GACGC	2 cut(s)	109, 464
Csp6I	GTAC	2 cut(s)	378, 474
CviAII	CATG	3 cut(s)	260, 346, 387
CviJI	RGCY	9 cut(s)	165, 257, 328, 367, 421, 429, 512, 516, 546
CviKI_1	RGCY	9 cut(s)	165, 257, 328, 367, 421, 429, 512, 516, 546
CviQI	GTAC	2 cut(s)	378, 474
DdeI	CTNAG	2 cut(s)	9, 525
DpnI	GATC	4 cut(s)	240, 275, 399, 504
DpnII	GATC	4 cut(s)	238, 273, 397, 502
Eam1104I	CTCTTC	1 cut(s)	178
EarI	CTCTTC	1 cut(s)	178
Eco47I	GGWCC	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	378
Eco81I	CCTNAGG	1 cut(s)	525
EcoRII	CCWGG	1 cut(s)	229
FaeI	CATG	3 cut(s)	263, 349, 390
FaiI	YATR	7 cut(s)	261, 285, 347, 352, 354, 388, 409
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	3 cut(s)	259, 345, 386
FbaI	TGATCA	1 cut(s)	238
Fnu4HI	GCNGC	4 cut(s)	87, 90, 321, 459
FokI	GGATG	4 cut(s)	281, 353, 548, 552
Fsp4HI	GCNGC	4 cut(s)	87, 90, 321, 459
FspBI	CTAG	2 cut(s)	426, 573
GlaI	GCGC	1 cut(s)	26
GluI	GCNGC	4 cut(s)	87, 90, 321, 459
HapII	CCGG	1 cut(s)	442
HgaI	GACGC	2 cut(s)	109, 464
HhaI	GCGC	1 cut(s)	27
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	3 cut(s)	263, 349, 390
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HindIII	AAGCTT	1 cut(s)	544
HinfI	GANTC	1 cut(s)	301
HpaII	CCGG	1 cut(s)	442
HphI	GGTGA	1 cut(s)	155
Hpy166II	GTNNAC	2 cut(s)	474, 591
Hpy188I	TCNGA	5 cut(s)	10, 243, 397, 402, 507
Hpy188III	TCNNGA	1 cut(s)	533
Hpy8I	GTNNAC	2 cut(s)	474, 591
HpyAV	CCTTC	2 cut(s)	11, 132
HpyCH4III	ACNGT	2 cut(s)	158, 362
HpyCH4IV	ACGT	1 cut(s)	555
HpyCH4V	TGCA	5 cut(s)	217, 263, 320, 461, 591
HpyF10VI	GCNNNNNNNGC	4 cut(s)	95, 176, 329, 458
HpyF3I	CTNAG	2 cut(s)	9, 525
HpySE526I	ACGT	1 cut(s)	555
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	3 cut(s)	263, 349, 390
HspAI	GCGC	1 cut(s)	25
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	4 cut(s)	238, 273, 397, 502
LmnI	GCTCC	2 cut(s)	418, 434
LpnPI	CCDG	8 cut(s)	216, 243, 251, 455, 512, 518, 526, 582
Lsp1109I	GCAGC	4 cut(s)	73, 76, 332, 445
LweI	GCATC	2 cut(s)	331, 574
MaeI	CTAG	2 cut(s)	426, 573
MaeII	ACGT	1 cut(s)	555
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	4 cut(s)	240, 275, 399, 504
MboI	GATC	4 cut(s)	238, 273, 397, 502
MboII	GAAGA	3 cut(s)	26, 46, 195
MhlI	GDGCHC	1 cut(s)	593
MluCI	AATT	1 cut(s)	290
MmeI	TCCRAC	1 cut(s)	538
MnlI	CCTC	5 cut(s)	4, 432, 493, 534, 544
MseI	TTAA	1 cut(s)	518
MspI	CCGG	1 cut(s)	442
MspR9I	CCNGG	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	4 cut(s)	95, 176, 329, 458
NdeII	GATC	4 cut(s)	238, 273, 397, 502
NlaIII	CATG	3 cut(s)	263, 349, 390
NlaIV	GGNNCC	2 cut(s)	107, 420
NmuCI	GTSAC	1 cut(s)	158
PfeI	GAWTC	1 cut(s)	301
PkrI	GCNGC	4 cut(s)	88, 91, 322, 460
Psp6I	CCWGG	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	2 cut(s)	107, 420
PspPI	GGNCC	1 cut(s)	106
PstNI	CAGNNNCTG	1 cut(s)	458
RsaI	GTAC	2 cut(s)	379, 475
RsaNI	GTAC	2 cut(s)	378, 474
SaqAI	TTAA	1 cut(s)	518
SatI	GCNGC	4 cut(s)	87, 90, 321, 459
Sau3AI	GATC	4 cut(s)	238, 273, 397, 502
Sau96I	GGNCC	1 cut(s)	106
ScrFI	CCNGG	1 cut(s)	231
SduI	GDGCHC	1 cut(s)	593
SetI	ASST	8 cut(s)	330, 369, 431, 518, 531, 548, 558, 596
SfaNI	GCATC	2 cut(s)	331, 574
SfcI	CTRYAG	1 cut(s)	296
SinI	GGWCC	1 cut(s)	106
Sse9I	AATT	1 cut(s)	290
SspMI	CTAG	2 cut(s)	426, 573
StyD4I	CCNGG	1 cut(s)	229
TaaI	ACNGT	2 cut(s)	158, 362
TaiI	ACGT	1 cut(s)	558
TasI	AATT	1 cut(s)	290
TatI	WGTACW	2 cut(s)	377, 473
TfiI	GAWTC	1 cut(s)	301
Tru1I	TTAA	1 cut(s)	518
Tru9I	TTAA	1 cut(s)	518
TscAI	CASTG	1 cut(s)	270
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	4 cut(s)	86, 89, 320, 458
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	1 cut(s)	221
TspGWI	ACGGA	2 cut(s)	113, 421
TspRI	CASTG	1 cut(s)	270
VneI	GTGCAC	1 cut(s)	589
VpaK11BI	GGWCC	1 cut(s)	106
XspI	CTAG	2 cut(s)	426, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.