Transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g22890 FvH4_4g22890 |
| malus_domestica | MD13G1128900.v1.1 |
| prunus_persica | Prupe.1G217700_v2.0.a1 Prupe.1G217700_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr4g0429161 |
| rosa_laevigata | RLG00000007093 |
| rosa_multiflora | Rmu_sc0000846.1_g000009 |
| rosa_roxburghii | Rroxscaffold_5G00370810 |
| rosa_rugosa | Rorug04G0233300 Rorug04G0233400 Rorug04G0233500 |
| rosa_samantha | Rh4AG289300 Rh4BG295300 Rh4CG310900 Rh4DG292300 |
| rosa_wichuraiana | Rw4G025070 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 125, 275, 330 |
| AclWI | GGATC | 2 cut(s) | 303, 456 |
| AcuI | CTGAAG | 2 cut(s) | 72, 534 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 476 |
| AgsI | TTSAA | 2 cut(s) | 16, 245 |
| AjnI | CCWGG | 2 cut(s) | 184, 498 |
| AluBI | AGCT | 6 cut(s) | 22, 283, 381, 458, 518, 546 |
| AluI | AGCT | 6 cut(s) | 22, 283, 381, 458, 518, 546 |
| AlwI | GGATC | 2 cut(s) | 303, 456 |
| ApeKI | GCWGC | 1 cut(s) | 508 |
| AspLEI | GCGC | 1 cut(s) | 145 |
| AspS9I | GGNCC | 1 cut(s) | 496 |
| AsuHPI | GGTGA | 1 cut(s) | 110 |
| AvaII | GGWCC | 1 cut(s) | 496 |
| AxyI | CCTNAGG | 1 cut(s) | 348 |
| BbvI | GCAGC | 1 cut(s) | 520 |
| BccI | CCATC | 1 cut(s) | 19 |
| BciT130I | CCWGG | 2 cut(s) | 186, 500 |
| BfaI | CTAG | 2 cut(s) | 122, 378 |
| BfmI | CTRYAG | 1 cut(s) | 251 |
| BisI | GCNGC | 2 cut(s) | 276, 509 |
| BlpI | GCTNAGC | 1 cut(s) | 547 |
| BlsI | GCNGC | 2 cut(s) | 277, 510 |
| Bme1390I | CCNGG | 2 cut(s) | 186, 500 |
| Bme18I | GGWCC | 1 cut(s) | 496 |
| BmgT120I | GGNCC | 1 cut(s) | 496 |
| BmrFI | CCNGG | 2 cut(s) | 186, 500 |
| BmsI | GCATC | 2 cut(s) | 16, 179 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 365, 397 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 547 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 476 |
| Bse1I | ACTGG | 2 cut(s) | 208, 225 |
| Bse21I | CCTNAGG | 1 cut(s) | 348 |
| BseBI | CCWGG | 2 cut(s) | 186, 500 |
| BseGI | GGATG | 2 cut(s) | 194, 229 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 476 |
| BseMII | CTCAG | 2 cut(s) | 339, 485 |
| BseNI | ACTGG | 2 cut(s) | 208, 225 |
| BseRI | GAGGAG | 1 cut(s) | 49 |
| BseXI | GCAGC | 1 cut(s) | 520 |
| BslFI | GGGAC | 1 cut(s) | 253 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 476 |
| BsmFI | GGGAC | 1 cut(s) | 253 |
| Bsp143I | GATC | 2 cut(s) | 295, 448 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 547 |
| BspACI | CCGC | 3 cut(s) | 125, 275, 330 |
| BspCNI | CTCAG | 2 cut(s) | 340, 484 |
| BspPI | GGATC | 2 cut(s) | 303, 456 |
| BspQI | GCTCTTC | 2 cut(s) | 133, 498 |
| BsrI | ACTGG | 2 cut(s) | 208, 225 |
| BssMI | GATC | 2 cut(s) | 295, 448 |
| Bst2UI | CCWGG | 2 cut(s) | 186, 500 |
| Bst4CI | ACNGT | 3 cut(s) | 113, 314, 410 |
| Bst6I | CTCTTC | 3 cut(s) | 26, 133, 498 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 284 |
| BstC8I | GCNNGC | 1 cut(s) | 285 |
| BstDEI | CTNAG | 4 cut(s) | 348, 471, 542, 547 |
| BstF5I | GGATG | 2 cut(s) | 194, 229 |
| BstHHI | GCGC | 1 cut(s) | 145 |
| BstKTI | GATC | 2 cut(s) | 298, 451 |
| BstMBI | GATC | 2 cut(s) | 295, 448 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 131, 140, 284, 367 |
| BstNI | CCWGG | 2 cut(s) | 186, 500 |
| BstNSI | RCATGY | 1 cut(s) | 342 |
| BstSCI | CCNGG | 2 cut(s) | 184, 498 |
| BstSFI | CTRYAG | 1 cut(s) | 251 |
| BstV1I | GCAGC | 1 cut(s) | 520 |
| BstX2I | RGATCY | 1 cut(s) | 295 |
| BstYI | RGATCY | 1 cut(s) | 295 |
| Bsu36I | CCTNAGG | 1 cut(s) | 348 |
| BtsCI | GGATG | 2 cut(s) | 194, 229 |
| Cac8I | GCNNGC | 1 cut(s) | 285 |
| CfoI | GCGC | 1 cut(s) | 145 |
| Cfr13I | GGNCC | 1 cut(s) | 496 |
| CviAII | CATG | 3 cut(s) | 301, 339, 394 |
| DdeI | CTNAG | 4 cut(s) | 348, 471, 542, 547 |
| DpnI | GATC | 2 cut(s) | 297, 450 |
| DpnII | GATC | 2 cut(s) | 295, 448 |
| Eam1104I | CTCTTC | 3 cut(s) | 26, 133, 498 |
| EarI | CTCTTC | 3 cut(s) | 26, 133, 498 |
| Eco47I | GGWCC | 1 cut(s) | 496 |
| Eco57I | CTGAAG | 2 cut(s) | 72, 534 |
| Eco81I | CCTNAGG | 1 cut(s) | 348 |
| EcoRII | CCWGG | 2 cut(s) | 184, 498 |
| EcoT22I | ATGCAT | 1 cut(s) | 340 |
| FaeI | CATG | 3 cut(s) | 304, 342, 397 |
| FaqI | GGGAC | 1 cut(s) | 253 |
| FatI | CATG | 3 cut(s) | 300, 338, 393 |
| Fnu4HI | GCNGC | 2 cut(s) | 276, 509 |
| FokI | GGATG | 2 cut(s) | 201, 236 |
| Fsp4HI | GCNGC | 2 cut(s) | 276, 509 |
| FspBI | CTAG | 2 cut(s) | 122, 378 |
| GlaI | GCGC | 1 cut(s) | 144 |
| GluI | GCNGC | 2 cut(s) | 276, 509 |
| HhaI | GCGC | 1 cut(s) | 145 |
| Hin1II | CATG | 3 cut(s) | 304, 342, 397 |
| Hin6I | GCGC | 1 cut(s) | 143 |
| HinP1I | GCGC | 1 cut(s) | 143 |
| HindIII | AAGCTT | 1 cut(s) | 281 |
| HinfI | GANTC | 5 cut(s) | 57, 256, 266, 322, 374 |
| HphI | GGTGA | 1 cut(s) | 110 |
| Hpy188I | TCNGA | 2 cut(s) | 152, 453 |
| Hpy188III | TCNNGA | 1 cut(s) | 347 |
| HpyAV | CCTTC | 4 cut(s) | 10, 47, 87, 548 |
| HpyCH4III | ACNGT | 3 cut(s) | 113, 314, 410 |
| HpyCH4V | TGCA | 4 cut(s) | 172, 338, 404, 535 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 131, 140, 284, 367 |
| HpyF3I | CTNAG | 4 cut(s) | 348, 471, 542, 547 |
| Hsp92II | CATG | 3 cut(s) | 304, 342, 397 |
| HspAI | GCGC | 1 cut(s) | 143 |
| Kzo9I | GATC | 2 cut(s) | 295, 448 |
| LguI | GCTCTTC | 2 cut(s) | 133, 498 |
| LmnI | GCTCC | 3 cut(s) | 4, 19, 36 |
| LpnPI | CCDG | 9 cut(s) | 171, 189, 198, 206, 360, 384, 485, 512, 525 |
| Lsp1109I | GCAGC | 1 cut(s) | 520 |
| LweI | GCATC | 2 cut(s) | 16, 179 |
| MaeI | CTAG | 2 cut(s) | 122, 378 |
| MaeIII | GTNAC | 1 cut(s) | 113 |
| MalI | GATC | 2 cut(s) | 297, 450 |
| MboI | GATC | 2 cut(s) | 295, 448 |
| MboII | GAAGA | 4 cut(s) | 43, 80, 150, 515 |
| MfeI | CAATTG | 2 cut(s) | 11, 245 |
| MflI | RGATCY | 1 cut(s) | 295 |
| MluCI | AATT | 3 cut(s) | 11, 245, 553 |
| MlyI | GAGTC | 3 cut(s) | 66, 275, 383 |
| MnlI | CCTC | 4 cut(s) | 27, 343, 439, 480 |
| Mph1103I | ATGCAT | 1 cut(s) | 340 |
| MspR9I | CCNGG | 2 cut(s) | 186, 500 |
| MunI | CAATTG | 2 cut(s) | 11, 245 |
| MvaI | CCWGG | 2 cut(s) | 186, 500 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 131, 140, 284, 367 |
| NdeII | GATC | 2 cut(s) | 295, 448 |
| NlaIII | CATG | 3 cut(s) | 304, 342, 397 |
| NmuCI | GTSAC | 1 cut(s) | 113 |
| NsiI | ATGCAT | 1 cut(s) | 340 |
| NspI | RCATGY | 1 cut(s) | 342 |
| PciSI | GCTCTTC | 2 cut(s) | 133, 498 |
| PfeI | GAWTC | 2 cut(s) | 256, 322 |
| PfoI | TCCNGGA | 1 cut(s) | 184 |
| PkrI | GCNGC | 2 cut(s) | 277, 510 |
| PleI | GAGTC | 3 cut(s) | 65, 274, 382 |
| PpsI | GAGTC | 3 cut(s) | 65, 274, 382 |
| Psp6I | CCWGG | 2 cut(s) | 184, 498 |
| PspGI | CCWGG | 2 cut(s) | 184, 498 |
| PspPI | GGNCC | 1 cut(s) | 496 |
| PsuI | RGATCY | 1 cut(s) | 295 |
| SapI | GCTCTTC | 2 cut(s) | 133, 498 |
| SatI | GCNGC | 2 cut(s) | 276, 509 |
| Sau3AI | GATC | 2 cut(s) | 295, 448 |
| Sau96I | GGNCC | 1 cut(s) | 496 |
| SchI | GAGTC | 3 cut(s) | 66, 275, 383 |
| ScrFI | CCNGG | 2 cut(s) | 186, 500 |
| SetI | ASST | 8 cut(s) | 24, 285, 383, 460, 501, 520, 540, 548 |
| SfaNI | GCATC | 2 cut(s) | 16, 179 |
| SfcI | CTRYAG | 1 cut(s) | 251 |
| SinI | GGWCC | 1 cut(s) | 496 |
| Sse9I | AATT | 3 cut(s) | 11, 245, 553 |
| SsiI | CCGC | 3 cut(s) | 125, 275, 330 |
| SspMI | CTAG | 2 cut(s) | 122, 378 |
| StyD4I | CCNGG | 2 cut(s) | 184, 498 |
| TaaI | ACNGT | 3 cut(s) | 113, 314, 410 |
| TasI | AATT | 3 cut(s) | 11, 245, 553 |
| TauI | GCSGC | 1 cut(s) | 278 |
| TfiI | GAWTC | 2 cut(s) | 256, 322 |
| TseFI | GTSAC | 1 cut(s) | 113 |
| TseI | GCWGC | 1 cut(s) | 508 |
| Tsp45I | GTSAC | 1 cut(s) | 113 |
| TspDTI | ATGAA | 2 cut(s) | 176, 382 |
| VpaK11BI | GGWCC | 1 cut(s) | 496 |
| XceI | RCATGY | 1 cut(s) | 342 |
| XspI | CTAG | 2 cut(s) | 122, 378 |
| Zsp2I | ATGCAT | 1 cut(s) | 340 |