Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0009788

Physical Location & Seq

Genomic Coordinates Forward (+)

13705673 .. 13709605

Gene Structure 3933 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1169400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGACTCAGGAATCGTTCATCTACAGCTTCGTGGCCCGAGGTACGATGATCTTGTCGGAGTACACCCAGTTCACCGGCAACTTCCCCGCGATTGCGGCGCAGTGTCTCCAGAAGCTTCCTTCCTCCAACAACAAGTTCACCTACAACTGCGATCACCACACCTTCAATTTCCTCGTGGAGGATGGATACGCATACTGTGTTGTTGCCAAAGACTCTGTCGGCAAGCAGATATCTATTGCATTTTTAGAACGAGTGAGAGCTGACTTCAGAAAAAGATATGGGGGTGGTAAAGCAGATACGGCTGTTGCCAAAAGTCTTAACAAGGAATTCGGACCAGTTATGAAAGAGCACATGAAGTATATAATTGATCATGCAGAAGAGATTGAAAAACTTTTGAAAGTGAAGGCGCAAGTTTCAGAAGTTAAAAGTATAATGTTAGAGAATATTGATAAGGCTATCGATAGAGGGGAAAACCTGACTGTTCTTGTTGACAAGACTGAAGATCTTCGTTCTCAGGCCCAAGATTACAAAAATAAGGGAACACAAATAAGAAGGAAAATGTGGTATCAAAACATGAAGATAAAGTTGGTCGTTTTCGGAATCCTCGTACTTCTGGTCCTGGTAATCTGGCTTTCTATTTGCCATGGATTTGACTGCACGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

222

Amino Acids

25.27

Weight (kDa)

8.84

Isoelectric Point (pI)

36.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	32 - 111	4.1e-20	Regulated-SNARE-like domain
Synaptobrevin	PF00957	131 - 210	4.5e-27	Synaptobrevin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15780
fragaria_vesca	FvH4_4g17920 FvH4_4g17920 FvH4_4g17920
malus_domestica	MD13G1169400.v1.1 MD16G1170600.v1.1
prunus_persica	Prupe.1G137700_v2.0.a1 Prupe.1G137700_v2.0.a1
pyrus_communis	pycom13g14500 pycom16g14300
rosa_chinensis	RchiOBHm_Chr4g0422091
rosa_laevigata	RLG00000007637
rosa_multiflora	Rmu_sc0009286.1_g000001 Rmu_sc0013978.1_g000003
rosa_roxburghii	Rroxscaffold_5G00364170
rosa_rugosa	Rorug04G0177100
rosa_samantha	Rh4AG236700 Rh4BG239500 Rh4CG251400 Rh4DG235600
rosa_wichuraiana	Rw4G020460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	89
AciI	CCGC	2 cut(s)	87, 95
AcsI	RAATTY	1 cut(s)	326
AcuI	CTGAAG	2 cut(s)	250, 519
AfaI	GTAC	3 cut(s)	43, 62, 609
AfiI	CCNNNNNNNGG	1 cut(s)	178
AgsI	TTSAA	3 cut(s)	166, 386, 397
AjnI	CCWGG	1 cut(s)	618
AjuI	GAANNNNNNNTTGG	4 cut(s)	119, 151, 569, 601
AluBI	AGCT	3 cut(s)	27, 115, 260
AluI	AGCT	3 cut(s)	27, 115, 260
Alw21I	GWGCWC	1 cut(s)	351
Alw26I	GTCTC	1 cut(s)	110
Ama87I	CYCGRG	1 cut(s)	36
AoxI	GGCC	2 cut(s)	33, 516
ApoI	RAATTY	1 cut(s)	326
ArsI	GACNNNNNNTTYG	2 cut(s)	201, 233
Asp700I	GAANNNNTTC	1 cut(s)	504
AspLEI	GCGC	2 cut(s)	100, 409
AspS9I	GGNCC	4 cut(s)	34, 332, 517, 616
AsuHPI	GGTGA	3 cut(s)	64, 130, 146
AvaI	CYCGRG	1 cut(s)	36
AvaII	GGWCC	2 cut(s)	332, 616
BaeI	ACNNNNGTAYC	2 cut(s)	288, 321
BauI	CACGAG	1 cut(s)	173
Bbv12I	GWGCWC	1 cut(s)	351
BccI	CCATC	1 cut(s)	176
BceAI	ACGGC	1 cut(s)	315
BciT130I	CCWGG	1 cut(s)	620
BciVI	GTATCC	1 cut(s)	179
BclI	TGATCA	1 cut(s)	367
BcoDI	GTCTC	1 cut(s)	110
BfaI	CTAG	1 cut(s)	664
BfmI	CTRYAG	1 cut(s)	22
BfuI	GTATCC	1 cut(s)	179
BglII	AGATCT	1 cut(s)	502
BisI	GCNGC	1 cut(s)	96
BlsI	GCNGC	1 cut(s)	97
Bme1390I	CCNGG	1 cut(s)	620
Bme18I	GGWCC	2 cut(s)	332, 616
BmeT110I	CYCGRG	1 cut(s)	36
BmgT120I	GGNCC	4 cut(s)	34, 332, 517, 616
BmrFI	CCNGG	1 cut(s)	620
BmrI	ACTGGG	1 cut(s)	61
BmuI	ACTGGG	1 cut(s)	61
BpmI	CTGGAG	1 cut(s)	92
Bsa29I	ATCGAT	1 cut(s)	459
BsaJI	CCNNGG	2 cut(s)	37, 643
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	2 cut(s)	67, 335
BseBI	CCWGG	1 cut(s)	620
BseCI	ATCGAT	1 cut(s)	459
BseDI	CCNNGG	2 cut(s)	37, 643
BseGI	GGATG	1 cut(s)	187
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseMII	CTCAG	2 cut(s)	20, 527
BseNI	ACTGG	2 cut(s)	67, 335
BsgI	GTGCAG	1 cut(s)	640
Bsh1236I	CGCG	1 cut(s)	89
BshFI	GGCC	2 cut(s)	35, 518
BshVI	ATCGAT	1 cut(s)	459
BsiHKAI	GWGCWC	1 cut(s)	351
BsiHKCI	CYCGRG	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	75
BslI	CCNNNNNNNGG	1 cut(s)	178
BsmAI	GTCTC	1 cut(s)	110
BsnI	GGCC	2 cut(s)	35, 518
BsoBI	CYCGRG	1 cut(s)	36
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp143I	GATC	4 cut(s)	48, 151, 367, 502
Bsp19I	CCATGG	1 cut(s)	643
BspACI	CCGC	2 cut(s)	87, 95
BspANI	GGCC	2 cut(s)	35, 518
BspCNI	CTCAG	2 cut(s)	19, 526
BspDI	ATCGAT	1 cut(s)	459
BspFNI	CGCG	1 cut(s)	89
BsrFI	RCCGGY	1 cut(s)	74
BsrI	ACTGG	2 cut(s)	67, 335
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	2 cut(s)	37, 643
BssMI	GATC	4 cut(s)	48, 151, 367, 502
BssSI	CACGAG	1 cut(s)	173
BssT1I	CCWWGG	1 cut(s)	643
Bst2BI	CACGAG	1 cut(s)	173
Bst2UI	CCWGG	1 cut(s)	620
Bst4CI	ACNGT	2 cut(s)	197, 481
Bst6I	CTCTTC	1 cut(s)	372
BstC8I	GCNNGC	1 cut(s)	224
BstDEI	CTNAG	2 cut(s)	6, 513
BstDSI	CCRYGG	1 cut(s)	643
BstENI	CCTNNNNNAGG	1 cut(s)	176
BstF5I	GGATG	1 cut(s)	187
BstFNI	CGCG	1 cut(s)	89
BstHHI	GCGC	2 cut(s)	100, 409
BstKTI	GATC	4 cut(s)	51, 154, 370, 505
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	4 cut(s)	48, 151, 367, 502
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 299
BstNI	CCWGG	1 cut(s)	620
BstSCI	CCNGG	1 cut(s)	618
BstSFI	CTRYAG	1 cut(s)	22
BstUI	CGCG	1 cut(s)	89
BstX2I	RGATCY	1 cut(s)	502
BstYI	RGATCY	1 cut(s)	502
Bsu15I	ATCGAT	1 cut(s)	459
BsuI	GTATCC	1 cut(s)	179
BsuRI	GGCC	2 cut(s)	35, 518
BsuTUI	ATCGAT	1 cut(s)	459
BtgI	CCRYGG	1 cut(s)	643
BtsCI	GGATG	1 cut(s)	187
BtsI	GCAGTG	1 cut(s)	107
BtsIMutI	CAGTG	1 cut(s)	107
Cac8I	GCNNGC	1 cut(s)	224
CfoI	GCGC	2 cut(s)	100, 409
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	4 cut(s)	34, 332, 517, 616
ClaI	ATCGAT	1 cut(s)	459
Csp6I	GTAC	3 cut(s)	42, 61, 608
CviAII	CATG	4 cut(s)	352, 371, 574, 644
CviJI	RGCY	8 cut(s)	27, 35, 115, 260, 302, 455, 518, 631
CviKI_1	RGCY	8 cut(s)	27, 35, 115, 260, 302, 455, 518, 631
CviQI	GTAC	3 cut(s)	42, 61, 608
DdeI	CTNAG	2 cut(s)	6, 513
DpnI	GATC	4 cut(s)	50, 153, 369, 504
DpnII	GATC	4 cut(s)	48, 151, 367, 502
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
Eco130I	CCWWGG	1 cut(s)	643
Eco32I	GATATC	1 cut(s)	231
Eco47I	GGWCC	2 cut(s)	332, 616
Eco57I	CTGAAG	2 cut(s)	250, 519
Eco88I	CYCGRG	1 cut(s)	36
EcoNI	CCTNNNNNAGG	1 cut(s)	176
EcoRI	GAATTC	1 cut(s)	326
EcoRII	CCWGG	1 cut(s)	618
EcoRV	GATATC	1 cut(s)	231
EcoT14I	CCWWGG	1 cut(s)	643
ErhI	CCWWGG	1 cut(s)	643
FaeI	CATG	4 cut(s)	355, 374, 577, 647
FatI	CATG	4 cut(s)	351, 370, 573, 643
FauI	CCCGC	1 cut(s)	94
FbaI	TGATCA	1 cut(s)	367
Fnu4HI	GCNGC	1 cut(s)	96
FokI	GGATG	1 cut(s)	194
Fsp4HI	GCNGC	1 cut(s)	96
FspBI	CTAG	1 cut(s)	664
GlaI	GCGC	2 cut(s)	99, 408
GluI	GCNGC	1 cut(s)	96
GsuI	CTGGAG	1 cut(s)	92
HaeIII	GGCC	2 cut(s)	35, 518
HapII	CCGG	1 cut(s)	75
HhaI	GCGC	2 cut(s)	100, 409
Hin1II	CATG	4 cut(s)	355, 374, 577, 647
Hin6I	GCGC	2 cut(s)	98, 407
HinP1I	GCGC	2 cut(s)	98, 407
HincII	GTYRAC	1 cut(s)	490
HindII	GTYRAC	1 cut(s)	490
HindIII	AAGCTT	1 cut(s)	113
HinfI	GANTC	4 cut(s)	4, 11, 212, 600
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	3 cut(s)	64, 130, 146
Hpy166II	GTNNAC	4 cut(s)	63, 72, 138, 490
Hpy188I	TCNGA	5 cut(s)	58, 269, 332, 418, 599
Hpy188III	TCNNGA	2 cut(s)	8, 109
Hpy8I	GTNNAC	4 cut(s)	63, 72, 138, 490
HpyAV	CCTTC	4 cut(s)	129, 172, 397, 546
HpyCH4III	ACNGT	2 cut(s)	197, 481
HpyCH4V	TGCA	3 cut(s)	239, 374, 657
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 299
HpyF3I	CTNAG	2 cut(s)	6, 513
Hsp92II	CATG	4 cut(s)	355, 374, 577, 647
HspAI	GCGC	2 cut(s)	98, 407
Ksp22I	TGATCA	1 cut(s)	367
Kzo9I	GATC	4 cut(s)	48, 151, 367, 502
MaeI	CTAG	1 cut(s)	664
MalI	GATC	4 cut(s)	50, 153, 369, 504
MboI	GATC	4 cut(s)	48, 151, 367, 502
MboII	GAAGA	4 cut(s)	389, 497, 512, 589
MflI	RGATCY	1 cut(s)	502
MhlI	GDGCHC	1 cut(s)	351
MluCI	AATT	3 cut(s)	166, 326, 363
MlyI	GAGTC	1 cut(s)	206
MmeI	TCCRAC	2 cut(s)	36, 150
MnlI	CCTC	6 cut(s)	32, 133, 172, 182, 458, 614
MroXI	GAANNNNTTC	1 cut(s)	504
MseI	TTAA	2 cut(s)	318, 423
MspI	CCGG	1 cut(s)	75
MspR9I	CCNGG	1 cut(s)	620
MvaI	CCWGG	1 cut(s)	620
MvnI	CGCG	1 cut(s)	89
MwoI	GCNNNNNNNGC	2 cut(s)	95, 299
NcoI	CCATGG	1 cut(s)	643
NdeII	GATC	4 cut(s)	48, 151, 367, 502
NlaIII	CATG	4 cut(s)	355, 374, 577, 647
PcsI	WCGNNNNNNNCGW	1 cut(s)	603
PdmI	GAANNNNTTC	1 cut(s)	504
PfeI	GAWTC	2 cut(s)	11, 600
PflFI	GACNNNGTC	1 cut(s)	215
PkrI	GCNGC	1 cut(s)	97
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
Psp6I	CCWGG	1 cut(s)	618
PspGI	CCWGG	1 cut(s)	618
PspPI	GGNCC	4 cut(s)	34, 332, 517, 616
PsrI	GAACNNNNNNTAC	2 cut(s)	53, 85
PsuI	RGATCY	1 cut(s)	502
PsyI	GACNNNGTC	1 cut(s)	215
RsaI	GTAC	3 cut(s)	43, 62, 609
RsaNI	GTAC	3 cut(s)	42, 61, 608
SaqAI	TTAA	2 cut(s)	318, 423
SatI	GCNGC	1 cut(s)	96
Sau3AI	GATC	4 cut(s)	48, 151, 367, 502
Sau96I	GGNCC	4 cut(s)	34, 332, 517, 616
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	620
SduI	GDGCHC	1 cut(s)	351
SetI	ASST	7 cut(s)	29, 43, 117, 143, 164, 262, 477
SfcI	CTRYAG	1 cut(s)	22
SinI	GGWCC	2 cut(s)	332, 616
Sse9I	AATT	3 cut(s)	166, 326, 363
SsiI	CCGC	2 cut(s)	87, 95
SspI	AATATT	1 cut(s)	445
SspMI	CTAG	1 cut(s)	664
StyD4I	CCNGG	1 cut(s)	618
StyI	CCWWGG	1 cut(s)	643
TaaI	ACNGT	2 cut(s)	197, 481
TaqI	TCGA	1 cut(s)	459
TasI	AATT	3 cut(s)	166, 326, 363
TatI	WGTACW	1 cut(s)	60
TauI	GCSGC	1 cut(s)	98
TfiI	GAWTC	2 cut(s)	11, 600
Tru1I	TTAA	2 cut(s)	318, 423
Tru9I	TTAA	2 cut(s)	318, 423
TscAI	CASTG	1 cut(s)	107
TspDTI	ATGAA	4 cut(s)	7, 356, 368, 590
TspRI	CASTG	1 cut(s)	107
Tth111I	GACNNNGTC	1 cut(s)	215
VpaK11BI	GGWCC	2 cut(s)	332, 616
XagI	CCTNNNNNAGG	1 cut(s)	176
XapI	RAATTY	1 cut(s)	326
XmnI	GAANNNNTTC	1 cut(s)	504
XspI	CTAG	1 cut(s)	664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.