Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0009788

Physical Location & Seq

Genomic Coordinates Reverse (-)

50134626 .. 50140318

Gene Structure 5693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG251400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGAGTCAGGAATCGTTCATATACAGCTTCGTGGCCAGAGGCATAATGATCTTGGCCGAGTACACCGAGTTCACCGGAAACTTCCCGGCGATTGCTTCTCAGTGCCTTCAGAGACTGCCCTCCACTAACAACAAGTTCACCTACAGCTGCGATCACCACACCTTCAATTTTCTTGTTGAAGATGGCTACGCATACTGTGTTGTTGCCAAGGACTCAGTTGGCAAACAGATATCTATTGCATTTCTAGAACGAGTGAAGGCTGACTTTAGGAAAAGATATGGAGGTGGTAAAGCAGATACAGCTATTGCCAAAAGTCTTAACAAGGAATTTGGACCAATAATGAAAGAGCACATGAAGTATATAATTGATCACGCAGAAGAGATTGAAAAGCTATTGAAAGTGAAGGCGCAAGTTTCAGAAGTTAAAAGCATAATGTTGGAGAATATTGACAAGGCTATTGATCGAGGGGAAAACCTTACTGTTCTTGTTGACAAGACCGAAACCCTTCGTTCTCAGGTAAACTGGAGGCAAGAGAAACTCAACCCATTCATCTGTTGTATGTGTCTTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

190

Amino Acids

21.67

Weight (kDa)

7.56

Isoelectric Point (pI)

40.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	32 - 111	1.1e-20	Regulated-SNARE-like domain
Synaptobrevin	PF00957	131 - 172	4.7e-12	Synaptobrevin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15780
fragaria_vesca	FvH4_4g17920 FvH4_4g17920 FvH4_4g17920
malus_domestica	MD13G1169400.v1.1 MD16G1170600.v1.1
prunus_persica	Prupe.1G137700_v2.0.a1 Prupe.1G137700_v2.0.a1
pyrus_communis	pycom13g14500 pycom16g14300
rosa_chinensis	RchiOBHm_Chr4g0422091
rosa_laevigata	RLG00000007637
rosa_multiflora	Rmu_sc0009286.1_g000001 Rmu_sc0013978.1_g000003
rosa_roxburghii	Rroxscaffold_5G00364170
rosa_rugosa	Rorug04G0177100
rosa_samantha	Rh4AG236700 Rh4BG239500 Rh4CG251400 Rh4DG235600
rosa_wichuraiana	Rw4G020460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	33, 54
AcsI	RAATTY	1 cut(s)	326
AcuI	CTGAAG	1 cut(s)	92
AfaI	GTAC	1 cut(s)	62
AgsI	TTSAA	4 cut(s)	166, 179, 386, 397
AluBI	AGCT	4 cut(s)	27, 147, 302, 391
AluI	AGCT	4 cut(s)	27, 147, 302, 391
Alw21I	GWGCWC	1 cut(s)	351
Alw26I	GTCTC	1 cut(s)	106
AlwNI	CAGNNNCTG	1 cut(s)	115
AoxI	GGCC	2 cut(s)	33, 54
ApeKI	GCWGC	1 cut(s)	147
ApoI	RAATTY	1 cut(s)	326
Asp700I	GAANNNNTTC	1 cut(s)	504
AspLEI	GCGC	1 cut(s)	409
AspS9I	GGNCC	1 cut(s)	332
AsuC2I	CCSGG	1 cut(s)	86
AsuHPI	GGTGA	3 cut(s)	64, 130, 146
AvaII	GGWCC	1 cut(s)	332
BalI	TGGCCA	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	351
BbvI	GCAGC	1 cut(s)	134
BccI	CCATC	1 cut(s)	176
BclI	TGATCA	1 cut(s)	367
BcnI	CCSGG	1 cut(s)	86
BcoDI	GTCTC	1 cut(s)	106
BfaI	CTAG	1 cut(s)	245
BfmI	CTRYAG	1 cut(s)	142
BisI	GCNGC	1 cut(s)	148
BlsI	GCNGC	1 cut(s)	149
Bme1390I	CCNGG	1 cut(s)	86
Bme18I	GGWCC	1 cut(s)	332
BmgT120I	GGNCC	1 cut(s)	332
BmrFI	CCNGG	1 cut(s)	86
BpmI	CTGGAG	1 cut(s)	544
BpuMI	CCSGG	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	207
BsaWI	WCCGGW	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	527
BseDI	CCNNGG	1 cut(s)	207
BseMII	CTCAG	3 cut(s)	113, 228, 527
BseNI	ACTGG	1 cut(s)	527
BseXI	GCAGC	1 cut(s)	134
BshFI	GGCC	2 cut(s)	35, 56
BsiHKAI	GWGCWC	1 cut(s)	351
BsiSI	CCGG	2 cut(s)	75, 86
BsmAI	GTCTC	1 cut(s)	106
BsnI	GGCC	2 cut(s)	35, 56
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp143I	GATC	4 cut(s)	48, 151, 367, 460
BspANI	GGCC	2 cut(s)	35, 56
BspCNI	CTCAG	3 cut(s)	112, 227, 526
BsrI	ACTGG	1 cut(s)	527
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	4 cut(s)	48, 151, 367, 460
BssT1I	CCWWGG	1 cut(s)	207
Bst4CI	ACNGT	2 cut(s)	197, 481
Bst6I	CTCTTC	1 cut(s)	372
BstDEI	CTNAG	3 cut(s)	99, 214, 513
BstHHI	GCGC	1 cut(s)	409
BstKTI	GATC	4 cut(s)	51, 154, 370, 463
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	4 cut(s)	48, 151, 367, 460
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstSCI	CCNGG	1 cut(s)	84
BstSFI	CTRYAG	1 cut(s)	142
BstV1I	GCAGC	1 cut(s)	134
BsuRI	GGCC	2 cut(s)	35, 56
BtsIMutI	CAGTG	1 cut(s)	107
CaiI	CAGNNNCTG	1 cut(s)	115
CfoI	GCGC	1 cut(s)	409
Cfr13I	GGNCC	1 cut(s)	332
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	1 cut(s)	352
CviJI	RGCY	9 cut(s)	27, 35, 56, 147, 186, 260, 302, 391, 455
CviKI_1	RGCY	9 cut(s)	27, 35, 56, 147, 186, 260, 302, 391, 455
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	3 cut(s)	99, 214, 513
DpnI	GATC	4 cut(s)	50, 153, 369, 462
DpnII	GATC	4 cut(s)	48, 151, 367, 460
EaeI	YGGCCR	2 cut(s)	33, 54
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
Eco130I	CCWWGG	1 cut(s)	207
Eco32I	GATATC	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	332
Eco57I	CTGAAG	1 cut(s)	92
EcoRV	GATATC	1 cut(s)	231
EcoT14I	CCWWGG	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	1 cut(s)	355
FalI	AAGNNNNNCTT	2 cut(s)	248, 280
FatI	CATG	1 cut(s)	351
FbaI	TGATCA	1 cut(s)	367
Fnu4HI	GCNGC	1 cut(s)	148
Fsp4HI	GCNGC	1 cut(s)	148
FspBI	CTAG	1 cut(s)	245
GlaI	GCGC	1 cut(s)	408
GluI	GCNGC	1 cut(s)	148
GsuI	CTGGAG	1 cut(s)	544
HaeIII	GGCC	2 cut(s)	35, 56
HapII	CCGG	2 cut(s)	75, 86
HhaI	GCGC	1 cut(s)	409
Hin1II	CATG	1 cut(s)	355
Hin6I	GCGC	1 cut(s)	407
HinP1I	GCGC	1 cut(s)	407
HincII	GTYRAC	1 cut(s)	490
HindII	GTYRAC	1 cut(s)	490
HinfI	GANTC	3 cut(s)	4, 11, 212
HpaII	CCGG	2 cut(s)	75, 86
HphI	GGTGA	3 cut(s)	64, 130, 146
Hpy166II	GTNNAC	5 cut(s)	63, 72, 138, 490, 520
Hpy188I	TCNGA	2 cut(s)	111, 418
Hpy188III	TCNNGA	2 cut(s)	8, 245
Hpy8I	GTNNAC	5 cut(s)	63, 72, 138, 490, 520
HpyAV	CCTTC	5 cut(s)	116, 172, 250, 397, 515
HpyCH4III	ACNGT	2 cut(s)	197, 481
HpyCH4V	TGCA	1 cut(s)	239
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpyF3I	CTNAG	3 cut(s)	99, 214, 513
Hsp92II	CATG	1 cut(s)	355
HspAI	GCGC	1 cut(s)	407
Ksp22I	TGATCA	1 cut(s)	367
Kzo9I	GATC	4 cut(s)	48, 151, 367, 460
LpnPI	CCDG	5 cut(s)	49, 88, 99, 500, 508
Lsp1109I	GCAGC	1 cut(s)	134
MaeI	CTAG	1 cut(s)	245
MalI	GATC	4 cut(s)	50, 153, 369, 462
MboI	GATC	4 cut(s)	48, 151, 367, 460
MboII	GAAGA	2 cut(s)	191, 389
MhlI	GDGCHC	1 cut(s)	351
MlsI	TGGCCA	1 cut(s)	35
MluCI	AATT	3 cut(s)	166, 326, 363
MluNI	TGGCCA	1 cut(s)	35
MlyI	GAGTC	2 cut(s)	13, 206
MmeI	TCCRAC	1 cut(s)	417
MnlI	CCTC	5 cut(s)	32, 130, 275, 458, 519
Mox20I	TGGCCA	1 cut(s)	35
MroXI	GAANNNNTTC	1 cut(s)	504
MscI	TGGCCA	1 cut(s)	35
MseI	TTAA	3 cut(s)	318, 423, 571
Msp20I	TGGCCA	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	147
MspI	CCGG	2 cut(s)	75, 86
MspR9I	CCNGG	1 cut(s)	86
MwoI	GCNNNNNNNGC	1 cut(s)	299
NciI	CCSGG	1 cut(s)	86
NdeII	GATC	4 cut(s)	48, 151, 367, 460
NlaIII	CATG	1 cut(s)	355
NmeAIII	GCCGAG	1 cut(s)	82
PdmI	GAANNNNTTC	1 cut(s)	504
PfeI	GAWTC	1 cut(s)	11
PkrI	GCNGC	1 cut(s)	149
PleI	GAGTC	2 cut(s)	12, 206
PpsI	GAGTC	2 cut(s)	12, 206
PspPI	GGNCC	1 cut(s)	332
PsrI	GAACNNNNNNTAC	2 cut(s)	53, 85
PstNI	CAGNNNCTG	1 cut(s)	115
PvuII	CAGCTG	1 cut(s)	147
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SaqAI	TTAA	3 cut(s)	318, 423, 571
SatI	GCNGC	1 cut(s)	148
Sau3AI	GATC	4 cut(s)	48, 151, 367, 460
Sau96I	GGNCC	1 cut(s)	332
SchI	GAGTC	2 cut(s)	13, 206
ScrFI	CCNGG	1 cut(s)	86
SduI	GDGCHC	1 cut(s)	351
SetI	ASST	9 cut(s)	29, 143, 149, 164, 286, 304, 393, 477, 519
SfcI	CTRYAG	1 cut(s)	142
SinI	GGWCC	1 cut(s)	332
Sse9I	AATT	3 cut(s)	166, 326, 363
SspI	AATATT	1 cut(s)	445
SspMI	CTAG	1 cut(s)	245
StyD4I	CCNGG	1 cut(s)	84
StyI	CCWWGG	1 cut(s)	207
TaaI	ACNGT	2 cut(s)	197, 481
TaqI	TCGA	1 cut(s)	463
TaqII	GACCGA	1 cut(s)	512
TasI	AATT	3 cut(s)	166, 326, 363
TatI	WGTACW	1 cut(s)	60
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	3 cut(s)	318, 423, 571
Tru9I	TTAA	3 cut(s)	318, 423, 571
TscAI	CASTG	1 cut(s)	107
TseI	GCWGC	1 cut(s)	147
TspDTI	ATGAA	4 cut(s)	7, 356, 368, 538
TspRI	CASTG	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	332
XapI	RAATTY	1 cut(s)	326
XbaI	TCTAGA	1 cut(s)	244
XmnI	GAANNNNTTC	1 cut(s)	504
XspI	CTAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.