Rh4BG239500

Belongs to the synaptobrevin family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Reverse (-)
40594723 .. 40600133
5411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG239500.1

Sequence Viewer

Length: 594 bp
ATGGGTCAGGAATCGTTCATATACAGCTTCGTGGCCAGAGGCATAATGATCTTGGCCGAGTACACCGAGTTCACCGGAAACTTCCCGGCGATTGCTTCTCAGTGCCTTCAGAGACTGCCCTCCACTAACAACAAGTTCACCTACAGCTGCGATCACCACACCTTTAATTTTCTAGTTGAAGATGGCTACGCGTACTGTGTTGTTGCCAAGGACTCAGTTGGCAAACAGATATCTATTGCATTTCTAGAACGAGTGAAGGCCGACTTTAGGAAAAGATATGGAGGTGGTAAAGCAGATACAGCTATTGCCAAAAGTCTTAACAAGGAATTTGGACCAATAATGAAAGAGCACATGAAGTATATAATTGATCACGCGGAAGAGATTGAAAAGCTATTGAAAGTGAAGGCACAAGTTTCAGAAGTTAAAAGCATAATGTTAGAGAATATTGACAAGGCTATTGATCGTGGGGAAAACCTTACTGTTCTTGTTGACAAGACCGAAACCCTTCGTTCTCAGGCCCAAGATTTCAAAAATAAAGGGACACAAATGAGAAGGAAGCTGTGGGATTTGACTGCACAAACTAGTAGAAATTAG

Protein Analysis

197

Amino Acids

22.43

Weight (kDa)

8.86

Isoelectric Point (pI)

36.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Longin PF13774 32 - 111 1.2e-20 Regulated-SNARE-like domain
Synaptobrevin PF00957 131 - 188 1.5e-18 Synaptobrevin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 191, 374
AciI CCGC 1 cut(s) 374
AcoI YGGCCR 2 cut(s) 33, 54
AcsI RAATTY 1 cut(s) 326
AcuI CTGAAG 1 cut(s) 92
AfaI GTAC 2 cut(s) 62, 194
AfiI CCNNNNNNNGG 1 cut(s) 267
AflIII ACRYGT 1 cut(s) 189
AgsI TTSAA 4 cut(s) 179, 386, 397, 529
AhlI ACTAGT 1 cut(s) 581
AluBI AGCT 5 cut(s) 27, 147, 302, 391, 559
AluI AGCT 5 cut(s) 27, 147, 302, 391, 559
Alw21I GWGCWC 1 cut(s) 351
Alw26I GTCTC 1 cut(s) 106
AlwNI CAGNNNCTG 1 cut(s) 115
AoxI GGCC 4 cut(s) 33, 54, 258, 516
ApeKI GCWGC 1 cut(s) 147
ApoI RAATTY 1 cut(s) 326
Asp700I GAANNNNTTC 1 cut(s) 504
AspS9I GGNCC 2 cut(s) 332, 517
AsuC2I CCSGG 1 cut(s) 86
AsuHPI GGTGA 3 cut(s) 64, 130, 146
AvaII GGWCC 1 cut(s) 332
BalI TGGCCA 1 cut(s) 35
Bbv12I GWGCWC 1 cut(s) 351
BbvI GCAGC 1 cut(s) 134
BccI CCATC 1 cut(s) 176
BclI TGATCA 1 cut(s) 367
BcnI CCSGG 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 106
BcuI ACTAGT 1 cut(s) 581
BfaI CTAG 3 cut(s) 173, 245, 582
BfmI CTRYAG 1 cut(s) 142
BisI GCNGC 1 cut(s) 148
BlsI GCNGC 1 cut(s) 149
Bme1390I CCNGG 1 cut(s) 86
Bme18I GGWCC 1 cut(s) 332
BmgT120I GGNCC 2 cut(s) 332, 517
BmrFI CCNGG 1 cut(s) 86
BpuMI CCSGG 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 207
BsaWI WCCGGW 1 cut(s) 74
Bsc4I CCNNNNNNNGG 1 cut(s) 267
BseDI CCNNGG 1 cut(s) 207
BseLI CCNNNNNNNGG 1 cut(s) 267
BseMII CTCAG 3 cut(s) 113, 228, 527
BseXI GCAGC 1 cut(s) 134
BsgI GTGCAG 1 cut(s) 558
Bsh1236I CGCG 2 cut(s) 191, 374
BshFI GGCC 4 cut(s) 35, 56, 260, 518
BsiHKAI GWGCWC 1 cut(s) 351
BsiSI CCGG 2 cut(s) 75, 86
BslFI GGGAC 1 cut(s) 553
BslI CCNNNNNNNGG 1 cut(s) 267
BsmAI GTCTC 1 cut(s) 106
BsmFI GGGAC 1 cut(s) 553
BsnI GGCC 4 cut(s) 35, 56, 260, 518
Bsp1286I GDGCHC 1 cut(s) 351
Bsp143I GATC 4 cut(s) 48, 151, 367, 460
BspACI CCGC 1 cut(s) 374
BspANI GGCC 4 cut(s) 35, 56, 260, 518
BspCNI CTCAG 3 cut(s) 112, 227, 526
BspFNI CGCG 2 cut(s) 191, 374
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 4 cut(s) 48, 151, 367, 460
BssT1I CCWWGG 1 cut(s) 207
Bst4CI ACNGT 2 cut(s) 197, 481
Bst6I CTCTTC 1 cut(s) 372
BstDEI CTNAG 3 cut(s) 99, 214, 513
BstFNI CGCG 2 cut(s) 191, 374
BstKTI GATC 4 cut(s) 51, 154, 370, 463
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 4 cut(s) 48, 151, 367, 460
BstMWI GCNNNNNNNGC 1 cut(s) 299
BstSCI CCNGG 1 cut(s) 84
BstSFI CTRYAG 1 cut(s) 142
BstUI CGCG 2 cut(s) 191, 374
BstV1I GCAGC 1 cut(s) 134
BsuRI GGCC 4 cut(s) 35, 56, 260, 518
BtsIMutI CAGTG 1 cut(s) 107
CaiI CAGNNNCTG 1 cut(s) 115
Cfr13I GGNCC 2 cut(s) 332, 517
Csp6I GTAC 2 cut(s) 61, 193
CviAII CATG 1 cut(s) 352
CviQI GTAC 2 cut(s) 61, 193
DdeI CTNAG 3 cut(s) 99, 214, 513
DpnI GATC 4 cut(s) 50, 153, 369, 462
DpnII GATC 4 cut(s) 48, 151, 367, 460
EaeI YGGCCR 2 cut(s) 33, 54
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
Eco130I CCWWGG 1 cut(s) 207
Eco32I GATATC 1 cut(s) 231
Eco47I GGWCC 1 cut(s) 332
Eco57I CTGAAG 1 cut(s) 92
EcoRV GATATC 1 cut(s) 231
EcoT14I CCWWGG 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 207
FaeI CATG 1 cut(s) 355
FaiI YATR 8 cut(s) 20, 22, 44, 279, 353, 360, 362, 431
FalI AAGNNNNNCTT 2 cut(s) 248, 280
FaqI GGGAC 1 cut(s) 553
FatI CATG 1 cut(s) 351
FbaI TGATCA 1 cut(s) 367
Fnu4HI GCNGC 1 cut(s) 148
Fsp4HI GCNGC 1 cut(s) 148
FspBI CTAG 3 cut(s) 173, 245, 582
GluI GCNGC 1 cut(s) 148
HaeIII GGCC 4 cut(s) 35, 56, 260, 518
HapII CCGG 2 cut(s) 75, 86
Hin1II CATG 1 cut(s) 355
HincII GTYRAC 1 cut(s) 490
HindII GTYRAC 1 cut(s) 490
HinfI GANTC 2 cut(s) 11, 212
HpaII CCGG 2 cut(s) 75, 86
HphI GGTGA 3 cut(s) 64, 130, 146
Hpy166II GTNNAC 4 cut(s) 63, 72, 138, 490
Hpy188I TCNGA 2 cut(s) 111, 418
Hpy188III TCNNGA 2 cut(s) 8, 245
Hpy8I GTNNAC 4 cut(s) 63, 72, 138, 490
HpyAV CCTTC 5 cut(s) 116, 250, 397, 515, 546
HpyCH4III ACNGT 2 cut(s) 197, 481
HpyCH4V TGCA 2 cut(s) 239, 575
HpyF10VI GCNNNNNNNGC 1 cut(s) 299
HpyF3I CTNAG 3 cut(s) 99, 214, 513
Hsp92II CATG 1 cut(s) 355
Ksp22I TGATCA 1 cut(s) 367
Kzo9I GATC 4 cut(s) 48, 151, 367, 460
LpnPI CCDG 4 cut(s) 49, 88, 99, 500
Lsp1109I GCAGC 1 cut(s) 134
MaeI CTAG 3 cut(s) 173, 245, 582
MalI GATC 4 cut(s) 50, 153, 369, 462
MboI GATC 4 cut(s) 48, 151, 367, 460
MboII GAAGA 2 cut(s) 191, 389
MhlI GDGCHC 1 cut(s) 351
MlsI TGGCCA 1 cut(s) 35
MluCI AATT 4 cut(s) 166, 326, 363, 589
MluI ACGCGT 1 cut(s) 189
MluNI TGGCCA 1 cut(s) 35
MlyI GAGTC 1 cut(s) 206
MnlI CCTC 3 cut(s) 32, 130, 275
Mox20I TGGCCA 1 cut(s) 35
MroXI GAANNNNTTC 1 cut(s) 504
MscI TGGCCA 1 cut(s) 35
MseI TTAA 3 cut(s) 165, 318, 423
Msp20I TGGCCA 1 cut(s) 35
MspA1I CMGCKG 1 cut(s) 147
MspI CCGG 2 cut(s) 75, 86
MspR9I CCNGG 1 cut(s) 86
MvnI CGCG 2 cut(s) 191, 374
MwoI GCNNNNNNNGC 1 cut(s) 299
NciI CCSGG 1 cut(s) 86
NdeII GATC 4 cut(s) 48, 151, 367, 460
NlaIII CATG 1 cut(s) 355
NmeAIII GCCGAG 1 cut(s) 82
PdmI GAANNNNTTC 1 cut(s) 504
PfeI GAWTC 1 cut(s) 11
PkrI GCNGC 1 cut(s) 149
PleI GAGTC 1 cut(s) 206
PpsI GAGTC 1 cut(s) 206
PspPI GGNCC 2 cut(s) 332, 517
PsrI GAACNNNNNNTAC 2 cut(s) 53, 85
PstNI CAGNNNCTG 1 cut(s) 115
PvuII CAGCTG 1 cut(s) 147
RsaI GTAC 2 cut(s) 62, 194
RsaNI GTAC 2 cut(s) 61, 193
SaqAI TTAA 3 cut(s) 165, 318, 423
SatI GCNGC 1 cut(s) 148
Sau3AI GATC 4 cut(s) 48, 151, 367, 460
Sau96I GGNCC 2 cut(s) 332, 517
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 1 cut(s) 86
SduI GDGCHC 1 cut(s) 351
SetI ASST 9 cut(s) 29, 143, 149, 164, 286, 304, 393, 477, 561
SfcI CTRYAG 1 cut(s) 142
SinI GGWCC 1 cut(s) 332
SpeI ACTAGT 1 cut(s) 581
Sse9I AATT 4 cut(s) 166, 326, 363, 589
SsiI CCGC 1 cut(s) 374
SspI AATATT 1 cut(s) 445
SspMI CTAG 3 cut(s) 173, 245, 582
StyD4I CCNGG 1 cut(s) 84
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 2 cut(s) 197, 481
TaqII GACCGA 1 cut(s) 512
TasI AATT 4 cut(s) 166, 326, 363, 589
TatI WGTACW 1 cut(s) 60
TfiI GAWTC 1 cut(s) 11
Tru1I TTAA 3 cut(s) 165, 318, 423
Tru9I TTAA 3 cut(s) 165, 318, 423
TscAI CASTG 1 cut(s) 107
TseI GCWGC 1 cut(s) 147
TspDTI ATGAA 3 cut(s) 7, 356, 368
TspRI CASTG 1 cut(s) 107
VpaK11BI GGWCC 1 cut(s) 332
XapI RAATTY 1 cut(s) 326
XbaI TCTAGA 1 cut(s) 244
XmnI GAANNNNTTC 1 cut(s) 504
XspI CTAG 3 cut(s) 173, 245, 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.