Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013978.1

Orthogroup ID

OG0009788

Physical Location & Seq

Genomic Coordinates Reverse (-)

13878 .. 17171

Gene Structure 3294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013978.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

atgcagtgttttatggaatctgcagcgtactgtgttgttgccaaggactcagttggcaaacagatatctattgcatttctagaacgagtgaaggccgactttaggaaaagatatggaggtggtaaagcagatacagctattgccaaaagtcttaacaaggaatttggaccaataatgaaagagcacatgaagtatataattgatcacgcagaagagattgaaaagctattgaaagtgaaggcgcaagtttcagaagttaaaagcataatgttggagaatattgacaaggctattgatcgaggggaaaaccttactgttcttgttgacaagaccgaaacccttcgttctcaggcgcaagatttcaaaaataaagggacgcaaatgagaaggaagctgtgggatttgactgcacaaactagtagaaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

142

Amino Acids

16.16

Weight (kDa)

9.32

Isoelectric Point (pI)

30.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15780
fragaria_vesca	FvH4_4g17920 FvH4_4g17920 FvH4_4g17920
malus_domestica	MD13G1169400.v1.1 MD16G1170600.v1.1
prunus_persica	Prupe.1G137700_v2.0.a1 Prupe.1G137700_v2.0.a1
pyrus_communis	pycom13g14500 pycom16g14300
rosa_chinensis	RchiOBHm_Chr4g0422091
rosa_laevigata	RLG00000007637
rosa_multiflora	Rmu_sc0009286.1_g000001 Rmu_sc0013978.1_g000003
rosa_roxburghii	Rroxscaffold_5G00364170
rosa_rugosa	Rorug04G0177100
rosa_samantha	Rh4AG236700 Rh4BG239500 Rh4CG251400 Rh4DG235600
rosa_wichuraiana	Rw4G020460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	161
AfaI	GTAC	1 cut(s)	29
AfiI	CCNNNNNNNGG	1 cut(s)	102
AgsI	TTSAA	3 cut(s)	221, 232, 364
AhlI	ACTAGT	1 cut(s)	416
AluBI	AGCT	3 cut(s)	137, 226, 394
AluI	AGCT	3 cut(s)	137, 226, 394
Alw21I	GWGCWC	1 cut(s)	186
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	1 cut(s)	23
ApoI	RAATTY	1 cut(s)	161
Asp700I	GAANNNNTTC	1 cut(s)	339
AspLEI	GCGC	2 cut(s)	244, 355
AspS9I	GGNCC	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	186
BbvI	GCAGC	1 cut(s)	35
BclI	TGATCA	1 cut(s)	202
BcuI	ACTAGT	1 cut(s)	416
BfaI	CTAG	2 cut(s)	80, 417
BfmI	CTRYAG	1 cut(s)	21
BisI	GCNGC	1 cut(s)	24
BlsI	GCNGC	1 cut(s)	25
Bme18I	GGWCC	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	1 cut(s)	102
BseDI	CCNNGG	1 cut(s)	42
BseLI	CCNNNNNNNGG	1 cut(s)	102
BseMII	CTCAG	2 cut(s)	63, 362
BseXI	GCAGC	1 cut(s)	35
BsgI	GTGCAG	1 cut(s)	393
BshFI	GGCC	1 cut(s)	95
BsiHKAI	GWGCWC	1 cut(s)	186
BslFI	GGGAC	1 cut(s)	388
BslI	CCNNNNNNNGG	1 cut(s)	102
BsmFI	GGGAC	1 cut(s)	388
BsnI	GGCC	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp143I	GATC	2 cut(s)	202, 295
BspANI	GGCC	1 cut(s)	95
BspCNI	CTCAG	2 cut(s)	62, 361
BspMAI	CTGCAG	1 cut(s)	25
BssECI	CCNNGG	1 cut(s)	42
BssMI	GATC	2 cut(s)	202, 295
BssT1I	CCWWGG	1 cut(s)	42
Bst4CI	ACNGT	2 cut(s)	32, 316
Bst6I	CTCTTC	1 cut(s)	207
BstDEI	CTNAG	2 cut(s)	49, 348
BstHHI	GCGC	2 cut(s)	244, 355
BstKTI	GATC	2 cut(s)	205, 298
BstMBI	GATC	2 cut(s)	202, 295
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstSFI	CTRYAG	1 cut(s)	21
BstV1I	GCAGC	1 cut(s)	35
BsuRI	GGCC	1 cut(s)	95
BtsI	GCAGTG	1 cut(s)	11
BtsIMutI	CAGTG	1 cut(s)	11
CfoI	GCGC	2 cut(s)	244, 355
Cfr13I	GGNCC	1 cut(s)	167
CseI	GACGC	1 cut(s)	385
Csp6I	GTAC	1 cut(s)	28
CviAII	CATG	1 cut(s)	187
CviJI	RGCY	5 cut(s)	95, 137, 226, 290, 394
CviKI_1	RGCY	5 cut(s)	95, 137, 226, 290, 394
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	2 cut(s)	49, 348
DpnI	GATC	2 cut(s)	204, 297
DpnII	GATC	2 cut(s)	202, 295
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	42
Eco32I	GATATC	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	167
EcoRV	GATATC	1 cut(s)	66
EcoT14I	CCWWGG	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	42
FaeI	CATG	1 cut(s)	190
FaiI	YATR	6 cut(s)	14, 114, 188, 195, 197, 266
FalI	AAGNNNNNCTT	2 cut(s)	83, 115
FaqI	GGGAC	1 cut(s)	388
FatI	CATG	1 cut(s)	186
FbaI	TGATCA	1 cut(s)	202
Fnu4HI	GCNGC	1 cut(s)	24
Fsp4HI	GCNGC	1 cut(s)	24
FspBI	CTAG	2 cut(s)	80, 417
GlaI	GCGC	2 cut(s)	243, 354
GluI	GCNGC	1 cut(s)	24
HaeIII	GGCC	1 cut(s)	95
HgaI	GACGC	1 cut(s)	385
HhaI	GCGC	2 cut(s)	244, 355
Hin1II	CATG	1 cut(s)	190
Hin6I	GCGC	2 cut(s)	242, 353
HinP1I	GCGC	2 cut(s)	242, 353
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HinfI	GANTC	2 cut(s)	17, 47
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	1 cut(s)	253
Hpy188III	TCNNGA	1 cut(s)	80
Hpy8I	GTNNAC	1 cut(s)	325
HpyAV	CCTTC	4 cut(s)	85, 232, 350, 381
HpyCH4III	ACNGT	2 cut(s)	32, 316
HpyCH4V	TGCA	4 cut(s)	4, 23, 74, 410
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	2 cut(s)	49, 348
Hsp92II	CATG	1 cut(s)	190
HspAI	GCGC	2 cut(s)	242, 353
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	2 cut(s)	202, 295
LpnPI	CCDG	1 cut(s)	335
Lsp1109I	GCAGC	1 cut(s)	35
MaeI	CTAG	2 cut(s)	80, 417
MalI	GATC	2 cut(s)	204, 297
MboI	GATC	2 cut(s)	202, 295
MboII	GAAGA	1 cut(s)	224
MhlI	GDGCHC	1 cut(s)	186
MluCI	AATT	3 cut(s)	161, 198, 424
MlyI	GAGTC	1 cut(s)	41
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	2 cut(s)	110, 293
MroXI	GAANNNNTTC	1 cut(s)	339
MseI	TTAA	2 cut(s)	153, 258
MwoI	GCNNNNNNNGC	1 cut(s)	134
NdeII	GATC	2 cut(s)	202, 295
NlaIII	CATG	1 cut(s)	190
PdmI	GAANNNNTTC	1 cut(s)	339
PfeI	GAWTC	1 cut(s)	17
PkrI	GCNGC	1 cut(s)	25
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
PspPI	GGNCC	1 cut(s)	167
PstI	CTGCAG	1 cut(s)	25
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
SaqAI	TTAA	2 cut(s)	153, 258
SatI	GCNGC	1 cut(s)	24
Sau3AI	GATC	2 cut(s)	202, 295
Sau96I	GGNCC	1 cut(s)	167
SchI	GAGTC	1 cut(s)	41
SduI	GDGCHC	1 cut(s)	186
SetI	ASST	5 cut(s)	121, 139, 228, 312, 396
SfcI	CTRYAG	1 cut(s)	21
SinI	GGWCC	1 cut(s)	167
SpeI	ACTAGT	1 cut(s)	416
Sse9I	AATT	3 cut(s)	161, 198, 424
SspI	AATATT	1 cut(s)	280
SspMI	CTAG	2 cut(s)	80, 417
StyI	CCWWGG	1 cut(s)	42
TaaI	ACNGT	2 cut(s)	32, 316
TaqI	TCGA	1 cut(s)	298
TaqII	GACCGA	1 cut(s)	347
TasI	AATT	3 cut(s)	161, 198, 424
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	2 cut(s)	153, 258
Tru9I	TTAA	2 cut(s)	153, 258
TseI	GCWGC	1 cut(s)	23
TspDTI	ATGAA	2 cut(s)	191, 203
VpaK11BI	GGWCC	1 cut(s)	167
XapI	RAATTY	1 cut(s)	161
XbaI	TCTAGA	1 cut(s)	79
XmnI	GAANNNNTTC	1 cut(s)	339
XspI	CTAG	2 cut(s)	80, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.