Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0009788

Physical Location & Seq

Genomic Coordinates Reverse (-)

31086573 .. 31088029

Gene Structure 1457 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0177100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGCAGAGTCTAGAGATACTTAATATATCCCACAACAATCTTTCTGGTTTCATTCCAACAAGTATGGAAGACATGCATGGGTTAACGTATGTTGACATATCCTACAATCACTTGGAAGGTCCACTTCCCAACATCAAAGCATTTCTAGCTGCTCCTTTAGAAGCATTGCAAGGCAACAAGGGCTTGTGTGGCAACTCAAGTTTTTTGCAACTTTGCAATAATGAAAGCCCAAAAAAGAACCATAAACTCATACTTCTGATGATCTTCCTTGTTCTTGGAGCAATTGCACTTCTAGCCTTTATATTTGCTTTTGTAGCAAAAAGGAAAAAGAAACATCAACATCTAGAAGAAAAAAACAAGGATGACGAAATTTCTTTTTCGATATTGAAGTTTGATGGGAAGACGATGTATGAGGAAATCGTAAGGGAAACAAAAGATTTTGATTCTATGTATTGCATAGGGAAGGGAGAACATGGAACTGTCTACAAAGCAACTTTGTCAAATGCTAACACAGTAGCTGTGAAGAAACTCCATCTGTTATGCGCTGATGACGAGAATCTTCAAAAAGAATTCTTGAATGAAATCAGGGCACTAACTGAGATGCGACACAGAAATATTGTGAAGCTTTATGGTTTTTGTTCACATAGACATCACTCATTTTTGGTGTATGAGTATCTTGAGAAGGGTAGTTTGGCCAGAGTGTTGAGCAAGGTTCAGGAAGCTAAAGAACTAGGGTGGAGTGAAAGGTTGAATATCGTGAAAGGTGTAGTTCATGCCTTGTGTTACATGCATCATGATTGCTTGCCACCAATTGTACATCGGGATATATCGAGCAAGAACATTTTACTGGATTCAGAGTATAAGGCTTGCGTTTCAGACTTTGGCACCGCTAAGTTCTTAAACCCAAACTCAGCTAATTGGACTGCCCTTGTAGGCACATATGGATATGTTGCACCAGAGCTTGCTTATACAATGGAAGTGAATGAGAAATGTGACGTTTATAGCTTTGAAAATATCAAATGGAACACAATCTATCTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

347

Amino Acids

39.46

Weight (kDa)

6.76

Isoelectric Point (pI)

40.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	1 - 38	9.7e-07	Leucine rich repeat
Pkinase	PF00069	152 - 336	9.2e-40	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	152 - 341	1e-35	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15780
fragaria_vesca	FvH4_4g17920 FvH4_4g17920 FvH4_4g17920
malus_domestica	MD13G1169400.v1.1 MD16G1170600.v1.1
prunus_persica	Prupe.1G137700_v2.0.a1 Prupe.1G137700_v2.0.a1
pyrus_communis	pycom13g14500 pycom16g14300
rosa_chinensis	RchiOBHm_Chr4g0422091
rosa_laevigata	RLG00000007637
rosa_multiflora	Rmu_sc0009286.1_g000001 Rmu_sc0013978.1_g000003
rosa_roxburghii	Rroxscaffold_5G00364170
rosa_rugosa	Rorug04G0177100
rosa_samantha	Rh4AG236700 Rh4BG239500 Rh4CG251400 Rh4DG235600
rosa_wichuraiana	Rw4G020460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	884
AccI	GTMKAC	1 cut(s)	483
AciI	CCGC	1 cut(s)	888
AcoI	YGGCCR	1 cut(s)	693
AcsI	RAATTY	2 cut(s)	369, 569
AfaI	GTAC	1 cut(s)	816
AgsI	TTSAA	5 cut(s)	388, 563, 577, 751, 1010
AjuI	GAANNNNNNNTTGG	2 cut(s)	674, 706
AluBI	AGCT	7 cut(s)	149, 518, 625, 722, 914, 961, 1005
AluI	AGCT	7 cut(s)	149, 518, 625, 722, 914, 961, 1005
AlwNI	CAGNNNCTG	1 cut(s)	518
AoxI	GGCC	1 cut(s)	693
ApeKI	GCWGC	1 cut(s)	149
ApoI	RAATTY	2 cut(s)	369, 569
AspLEI	GCGC	1 cut(s)	545
AspS9I	GGNCC	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	119
BaeGI	GKGCMC	1 cut(s)	592
BalI	TGGCCA	1 cut(s)	695
BanI	GGYRCC	1 cut(s)	884
BbsI	GAAGAC	2 cut(s)	75, 407
BbvI	GCAGC	1 cut(s)	136
BccI	CCATC	2 cut(s)	389, 540
BfaI	CTAG	6 cut(s)	11, 146, 293, 344, 731, 1037
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	886
BmsI	GCATC	2 cut(s)	591, 799
BpiI	GAAGAC	2 cut(s)	75, 407
BpuEI	CTTGAG	2 cut(s)	181, 698
Bse1I	ACTGG	1 cut(s)	852
Bse3DI	GCAATG	1 cut(s)	164
BseGI	GGATG	1 cut(s)	367
BseMI	GCAATG	1 cut(s)	164
BseMII	CTCAG	2 cut(s)	588, 924
BseNI	ACTGG	1 cut(s)	852
BseSI	GKGCMC	1 cut(s)	592
BseXI	GCAGC	1 cut(s)	136
BshFI	GGCC	1 cut(s)	695
BshNI	GGYRCC	1 cut(s)	884
BsnI	GGCC	1 cut(s)	695
Bsp1286I	GDGCHC	1 cut(s)	592
Bsp1407I	TGTACA	1 cut(s)	814
Bsp143I	GATC	1 cut(s)	261
BspACI	CCGC	1 cut(s)	888
BspANI	GGCC	1 cut(s)	695
BspCNI	CTCAG	2 cut(s)	589, 923
BspHI	TCATGA	1 cut(s)	793
BspLI	GGNNCC	1 cut(s)	886
BspT107I	GGYRCC	1 cut(s)	884
BsrDI	GCAATG	1 cut(s)	164
BsrGI	TGTACA	1 cut(s)	814
BsrI	ACTGG	1 cut(s)	852
BssMI	GATC	1 cut(s)	261
Bst4CI	ACNGT	2 cut(s)	481, 514
BstAUI	TGTACA	1 cut(s)	814
BstC8I	GCNNGC	3 cut(s)	803, 868, 963
BstDEI	CTNAG	3 cut(s)	597, 891, 910
BstF5I	GGATG	1 cut(s)	367
BstHHI	GCGC	1 cut(s)	545
BstKTI	GATC	1 cut(s)	264
BstMBI	GATC	1 cut(s)	261
BstMWI	GCNNNNNNNGC	5 cut(s)	146, 180, 189, 293, 314
BstNSI	RCATGY	2 cut(s)	76, 790
BstSLI	GKGCMC	1 cut(s)	592
BstV1I	GCAGC	1 cut(s)	136
BstV2I	GAAGAC	2 cut(s)	75, 407
BsuRI	GGCC	1 cut(s)	695
BtsCI	GGATG	1 cut(s)	367
Cac8I	GCNNGC	3 cut(s)	803, 868, 963
CaiI	CAGNNNCTG	1 cut(s)	518
CciI	TCATGA	1 cut(s)	793
CfoI	GCGC	1 cut(s)	545
Cfr13I	GGNCC	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	815
CviAII	CATG	6 cut(s)	73, 77, 473, 773, 787, 794
CviQI	GTAC	1 cut(s)	815
DdeI	CTNAG	3 cut(s)	597, 891, 910
DpnI	GATC	1 cut(s)	263
DpnII	GATC	1 cut(s)	261
EaeI	YGGCCR	1 cut(s)	693
Eco47I	GGWCC	1 cut(s)	119
EcoRI	GAATTC	1 cut(s)	569
EcoT22I	ATGCAT	2 cut(s)	78, 792
FaeI	CATG	6 cut(s)	76, 80, 476, 776, 790, 797
FalI	AAGNNNNNCTT	2 cut(s)	108, 140
FatI	CATG	6 cut(s)	72, 76, 472, 772, 786, 793
FauNDI	CATATG	1 cut(s)	940
FblI	GTMKAC	1 cut(s)	483
Fnu4HI	GCNGC	1 cut(s)	150
FokI	GGATG	1 cut(s)	374
Fsp4HI	GCNGC	1 cut(s)	150
FspBI	CTAG	6 cut(s)	11, 146, 293, 344, 731, 1037
GlaI	GCGC	1 cut(s)	544
GluI	GCNGC	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	695
HhaI	GCGC	1 cut(s)	545
Hin1II	CATG	6 cut(s)	76, 80, 476, 776, 790, 797
Hin6I	GCGC	1 cut(s)	543
HinP1I	GCGC	1 cut(s)	543
HincII	GTYRAC	2 cut(s)	84, 94
HindII	GTYRAC	2 cut(s)	84, 94
HindIII	AAGCTT	1 cut(s)	623
HinfI	GANTC	4 cut(s)	7, 443, 556, 851
HpaI	GTTAAC	1 cut(s)	84
Hpy166II	GTNNAC	5 cut(s)	84, 94, 122, 484, 641
Hpy188I	TCNGA	3 cut(s)	258, 856, 877
Hpy188III	TCNNGA	8 cut(s)	11, 344, 574, 677, 716, 757, 794, 821
Hpy8I	GTNNAC	5 cut(s)	84, 94, 122, 484, 641
HpyAV	CCTTC	3 cut(s)	110, 457, 676
HpyCH4III	ACNGT	2 cut(s)	481, 514
HpyCH4IV	ACGT	2 cut(s)	86, 996
HpyCH4V	TGCA	9 cut(s)	4, 76, 169, 208, 216, 287, 456, 790, 953
HpyF10VI	GCNNNNNNNGC	5 cut(s)	146, 180, 189, 293, 314
HpyF3I	CTNAG	3 cut(s)	597, 891, 910
HpySE526I	ACGT	2 cut(s)	86, 996
Hsp92II	CATG	6 cut(s)	76, 80, 476, 776, 790, 797
HspAI	GCGC	1 cut(s)	543
KspAI	GTTAAC	1 cut(s)	84
Kzo9I	GATC	1 cut(s)	261
LmnI	GCTCC	2 cut(s)	157, 278
LpnPI	CCDG	6 cut(s)	30, 571, 701, 709, 833, 969
Lsp1109I	GCAGC	1 cut(s)	136
LweI	GCATC	2 cut(s)	591, 799
MaeI	CTAG	6 cut(s)	11, 146, 293, 344, 731, 1037
MaeII	ACGT	2 cut(s)	86, 996
MaeIII	GTNAC	2 cut(s)	782, 992
MalI	GATC	1 cut(s)	263
MboI	GATC	1 cut(s)	261
MboII	GAAGA	6 cut(s)	80, 256, 359, 412, 535, 551
MfeI	CAATTG	2 cut(s)	282, 810
MhlI	GDGCHC	1 cut(s)	592
MlsI	TGGCCA	1 cut(s)	695
MluCI	AATT	5 cut(s)	282, 369, 569, 810, 916
MluNI	TGGCCA	1 cut(s)	695
MlyI	GAGTC	1 cut(s)	16
MmeI	TCCRAC	1 cut(s)	80
MnlI	CCTC	1 cut(s)	406
Mox20I	TGGCCA	1 cut(s)	695
Mph1103I	ATGCAT	2 cut(s)	78, 792
MscI	TGGCCA	1 cut(s)	695
MseI	TTAA	3 cut(s)	21, 83, 899
Msp20I	TGGCCA	1 cut(s)	695
MunI	CAATTG	2 cut(s)	282, 810
MwoI	GCNNNNNNNGC	5 cut(s)	146, 180, 189, 293, 314
NdeI	CATATG	1 cut(s)	940
NdeII	GATC	1 cut(s)	261
NlaIII	CATG	6 cut(s)	76, 80, 476, 776, 790, 797
NlaIV	GGNNCC	1 cut(s)	886
NmuCI	GTSAC	1 cut(s)	992
NsiI	ATGCAT	2 cut(s)	78, 792
NspI	RCATGY	2 cut(s)	76, 790
PagI	TCATGA	1 cut(s)	793
PfeI	GAWTC	3 cut(s)	443, 556, 851
PkrI	GCNGC	1 cut(s)	151
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
PspN4I	GGNNCC	1 cut(s)	886
PspPI	GGNCC	1 cut(s)	119
PstNI	CAGNNNCTG	1 cut(s)	518
RsaI	GTAC	1 cut(s)	816
RsaNI	GTAC	1 cut(s)	815
SaqAI	TTAA	3 cut(s)	21, 83, 899
SatI	GCNGC	1 cut(s)	150
Sau3AI	GATC	1 cut(s)	261
Sau96I	GGNCC	1 cut(s)	119
SchI	GAGTC	1 cut(s)	16
SduI	GDGCHC	1 cut(s)	592
SfaNI	GCATC	2 cut(s)	591, 799
SinI	GGWCC	1 cut(s)	119
SmlI	CTYRAG	2 cut(s)	196, 677
SmoI	CTYRAG	2 cut(s)	196, 677
Sse9I	AATT	5 cut(s)	282, 369, 569, 810, 916
SsiI	CCGC	1 cut(s)	888
SspI	AATATT	1 cut(s)	616
SspMI	CTAG	6 cut(s)	11, 146, 293, 344, 731, 1037
TaaI	ACNGT	2 cut(s)	481, 514
TaiI	ACGT	2 cut(s)	89, 999
TaqI	TCGA	2 cut(s)	380, 830
TasI	AATT	5 cut(s)	282, 369, 569, 810, 916
TatI	WGTACW	1 cut(s)	814
TfiI	GAWTC	3 cut(s)	443, 556, 851
Tru1I	TTAA	3 cut(s)	21, 83, 899
Tru9I	TTAA	3 cut(s)	21, 83, 899
TseFI	GTSAC	1 cut(s)	992
TseI	GCWGC	1 cut(s)	149
Tsp45I	GTSAC	1 cut(s)	992
TspDTI	ATGAA	4 cut(s)	40, 237, 594, 761
VpaK11BI	GGWCC	1 cut(s)	119
XapI	RAATTY	2 cut(s)	369, 569
XbaI	TCTAGA	2 cut(s)	10, 343
XceI	RCATGY	2 cut(s)	76, 790
XmiI	GTMKAC	1 cut(s)	483
XspI	CTAG	6 cut(s)	11, 146, 293, 344, 731, 1037
Zsp2I	ATGCAT	2 cut(s)	78, 792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.