Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0009788

Physical Location & Seq

Genomic Coordinates Forward (+)

19281623 .. 19286860

Gene Structure 5238 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007637

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGAGTCAGGAATCGTTCATATACAGCTTCGTGGCCAGAGGCATAATGATCTTGGCCGAGTACACCGAGTTCACCGGAAACTTCCCGGCGATTGCTTCACAGTGCCTCCAGAGACTGCCCTCCACTAACAACAAGTTCACCTACAGCTGCGATCACCACACCTTTAATTTTCTAGTTGAAGATGGCTACGCGTACTGTGTTGTTGCCAAGGACTCAGTTGGCAAACAGATATCTATTGCATTTCTAGAACGAGTGAAGGCCGACTTTAGGAAAAGATATGGAGGTGGTAAAGCAGATACAGCTATTGCCAAAAGTCTTAACAAGGAATTTGGACCAATAATGAAAGAGCACATGAAGTATATAATTGATCATGCAGAAGAGATTGAAAAGCTATTGAAAGTGAAGGCGCAAGTTTCAGAAGTTAAAAGCATAATGTTAGAGAATATTGACAAGGCTATTGATCGAGGGGAAAACCTTACTGTTCTTGTTGACAAGACCGAAACCCTTCGTTCTCAGGCCCAAGATTTCAAAAATAAAGGGACACAAATGAGAAGGAAGCTGTGGTATCAAAACATGAAAATAAAGTTGGTGGTTTTTGGAATCTTGTTACTTCTGATCTTGGTTATCTGGCTCTCTATTTGTCATGGATTTGACTGCACAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

222

Amino Acids

25.28

Weight (kDa)

8.85

Isoelectric Point (pI)

38.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	32 - 111	1.6e-20	Regulated-SNARE-like domain
Synaptobrevin	PF00957	131 - 210	1.6e-26	Synaptobrevin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15780
fragaria_vesca	FvH4_4g17920 FvH4_4g17920 FvH4_4g17920
malus_domestica	MD13G1169400.v1.1 MD16G1170600.v1.1
prunus_persica	Prupe.1G137700_v2.0.a1 Prupe.1G137700_v2.0.a1
pyrus_communis	pycom13g14500 pycom16g14300
rosa_chinensis	RchiOBHm_Chr4g0422091
rosa_laevigata	RLG00000007637
rosa_multiflora	Rmu_sc0009286.1_g000001 Rmu_sc0013978.1_g000003
rosa_roxburghii	Rroxscaffold_5G00364170
rosa_rugosa	Rorug04G0177100
rosa_samantha	Rh4AG236700 Rh4BG239500 Rh4CG251400 Rh4DG235600
rosa_wichuraiana	Rw4G020460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	191
AcoI	YGGCCR	2 cut(s)	33, 54
AcsI	RAATTY	1 cut(s)	326
AfaI	GTAC	2 cut(s)	62, 194
AfiI	CCNNNNNNNGG	1 cut(s)	267
AflIII	ACRYGT	1 cut(s)	189
AgsI	TTSAA	4 cut(s)	179, 386, 397, 529
AjuI	GAANNNNNNNTTGG	2 cut(s)	569, 601
AluBI	AGCT	5 cut(s)	27, 147, 302, 391, 559
AluI	AGCT	5 cut(s)	27, 147, 302, 391, 559
Alw21I	GWGCWC	1 cut(s)	351
Alw26I	GTCTC	1 cut(s)	106
AlwNI	CAGNNNCTG	1 cut(s)	115
AoxI	GGCC	4 cut(s)	33, 54, 258, 516
ApeKI	GCWGC	1 cut(s)	147
ApoI	RAATTY	1 cut(s)	326
Asp700I	GAANNNNTTC	1 cut(s)	504
AspLEI	GCGC	1 cut(s)	409
AspS9I	GGNCC	2 cut(s)	332, 517
AsuC2I	CCSGG	1 cut(s)	86
AsuHPI	GGTGA	3 cut(s)	64, 130, 146
AvaII	GGWCC	1 cut(s)	332
BalI	TGGCCA	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	351
BbvI	GCAGC	1 cut(s)	134
BccI	CCATC	1 cut(s)	176
BclI	TGATCA	1 cut(s)	367
BcnI	CCSGG	1 cut(s)	86
BcoDI	GTCTC	1 cut(s)	106
BfaI	CTAG	3 cut(s)	173, 245, 664
BfmI	CTRYAG	1 cut(s)	142
BisI	GCNGC	1 cut(s)	148
BlsI	GCNGC	1 cut(s)	149
Bme1390I	CCNGG	1 cut(s)	86
Bme18I	GGWCC	1 cut(s)	332
BmgT120I	GGNCC	2 cut(s)	332, 517
BmrFI	CCNGG	1 cut(s)	86
BpmI	CTGGAG	1 cut(s)	92
BpuMI	CCSGG	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	207
BsaWI	WCCGGW	1 cut(s)	74
BsaXI	ACNNNNNCTCC	2 cut(s)	90, 120
Bsc4I	CCNNNNNNNGG	1 cut(s)	267
BseDI	CCNNGG	1 cut(s)	207
BseLI	CCNNNNNNNGG	1 cut(s)	267
BseMII	CTCAG	2 cut(s)	228, 527
BseXI	GCAGC	1 cut(s)	134
BsgI	GTGCAG	1 cut(s)	640
Bsh1236I	CGCG	1 cut(s)	191
BshFI	GGCC	4 cut(s)	35, 56, 260, 518
BsiHKAI	GWGCWC	1 cut(s)	351
BsiSI	CCGG	2 cut(s)	75, 86
BslFI	GGGAC	1 cut(s)	553
BslI	CCNNNNNNNGG	1 cut(s)	267
BsmAI	GTCTC	1 cut(s)	106
BsmFI	GGGAC	1 cut(s)	553
BsnI	GGCC	4 cut(s)	35, 56, 260, 518
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp143I	GATC	5 cut(s)	48, 151, 367, 460, 615
BspANI	GGCC	4 cut(s)	35, 56, 260, 518
BspCNI	CTCAG	2 cut(s)	227, 526
BspFNI	CGCG	1 cut(s)	191
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	5 cut(s)	48, 151, 367, 460, 615
BssT1I	CCWWGG	1 cut(s)	207
Bst4CI	ACNGT	3 cut(s)	102, 197, 481
Bst6I	CTCTTC	1 cut(s)	372
BstDEI	CTNAG	2 cut(s)	214, 513
BstFNI	CGCG	1 cut(s)	191
BstHHI	GCGC	1 cut(s)	409
BstKTI	GATC	5 cut(s)	51, 154, 370, 463, 618
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	5 cut(s)	48, 151, 367, 460, 615
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstSCI	CCNGG	1 cut(s)	84
BstSFI	CTRYAG	1 cut(s)	142
BstUI	CGCG	1 cut(s)	191
BstV1I	GCAGC	1 cut(s)	134
BsuRI	GGCC	4 cut(s)	35, 56, 260, 518
BtsIMutI	CAGTG	1 cut(s)	107
CaiI	CAGNNNCTG	1 cut(s)	115
CfoI	GCGC	1 cut(s)	409
Cfr13I	GGNCC	2 cut(s)	332, 517
Csp6I	GTAC	2 cut(s)	61, 193
CviAII	CATG	4 cut(s)	352, 371, 574, 644
CviQI	GTAC	2 cut(s)	61, 193
DdeI	CTNAG	2 cut(s)	214, 513
DpnI	GATC	5 cut(s)	50, 153, 369, 462, 617
DpnII	GATC	5 cut(s)	48, 151, 367, 460, 615
EaeI	YGGCCR	2 cut(s)	33, 54
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
Eco130I	CCWWGG	1 cut(s)	207
Eco32I	GATATC	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	332
EcoRV	GATATC	1 cut(s)	231
EcoT14I	CCWWGG	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	4 cut(s)	355, 374, 577, 647
FalI	AAGNNNNNCTT	2 cut(s)	248, 280
FaqI	GGGAC	1 cut(s)	553
FatI	CATG	4 cut(s)	351, 370, 573, 643
FbaI	TGATCA	1 cut(s)	367
Fnu4HI	GCNGC	1 cut(s)	148
Fsp4HI	GCNGC	1 cut(s)	148
FspBI	CTAG	3 cut(s)	173, 245, 664
GlaI	GCGC	1 cut(s)	408
GluI	GCNGC	1 cut(s)	148
GsuI	CTGGAG	1 cut(s)	92
HaeIII	GGCC	4 cut(s)	35, 56, 260, 518
HapII	CCGG	2 cut(s)	75, 86
HhaI	GCGC	1 cut(s)	409
Hin1II	CATG	4 cut(s)	355, 374, 577, 647
Hin6I	GCGC	1 cut(s)	407
HinP1I	GCGC	1 cut(s)	407
HincII	GTYRAC	1 cut(s)	490
HindII	GTYRAC	1 cut(s)	490
HinfI	GANTC	4 cut(s)	4, 11, 212, 600
HpaII	CCGG	2 cut(s)	75, 86
HphI	GGTGA	3 cut(s)	64, 130, 146
Hpy166II	GTNNAC	4 cut(s)	63, 72, 138, 490
Hpy188I	TCNGA	2 cut(s)	418, 615
Hpy188III	TCNNGA	3 cut(s)	8, 109, 245
Hpy8I	GTNNAC	4 cut(s)	63, 72, 138, 490
HpyAV	CCTTC	4 cut(s)	250, 397, 515, 546
HpyCH4III	ACNGT	3 cut(s)	102, 197, 481
HpyCH4V	TGCA	3 cut(s)	239, 374, 657
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpyF3I	CTNAG	2 cut(s)	214, 513
Hsp92II	CATG	4 cut(s)	355, 374, 577, 647
HspAI	GCGC	1 cut(s)	407
Ksp22I	TGATCA	1 cut(s)	367
Kzo9I	GATC	5 cut(s)	48, 151, 367, 460, 615
LpnPI	CCDG	6 cut(s)	49, 88, 99, 122, 500, 613
Lsp1109I	GCAGC	1 cut(s)	134
MaeI	CTAG	3 cut(s)	173, 245, 664
MaeIII	GTNAC	1 cut(s)	606
MalI	GATC	5 cut(s)	50, 153, 369, 462, 617
MboI	GATC	5 cut(s)	48, 151, 367, 460, 615
MboII	GAAGA	2 cut(s)	191, 389
MhlI	GDGCHC	1 cut(s)	351
MlsI	TGGCCA	1 cut(s)	35
MluCI	AATT	3 cut(s)	166, 326, 363
MluI	ACGCGT	1 cut(s)	189
MluNI	TGGCCA	1 cut(s)	35
MlyI	GAGTC	2 cut(s)	13, 206
MnlI	CCTC	5 cut(s)	32, 116, 130, 275, 458
Mox20I	TGGCCA	1 cut(s)	35
MroXI	GAANNNNTTC	1 cut(s)	504
MscI	TGGCCA	1 cut(s)	35
MseI	TTAA	3 cut(s)	165, 318, 423
Msp20I	TGGCCA	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	147
MspI	CCGG	2 cut(s)	75, 86
MspR9I	CCNGG	1 cut(s)	86
MvnI	CGCG	1 cut(s)	191
MwoI	GCNNNNNNNGC	1 cut(s)	299
NciI	CCSGG	1 cut(s)	86
NdeII	GATC	5 cut(s)	48, 151, 367, 460, 615
NlaIII	CATG	4 cut(s)	355, 374, 577, 647
NmeAIII	GCCGAG	1 cut(s)	82
PdmI	GAANNNNTTC	1 cut(s)	504
PfeI	GAWTC	2 cut(s)	11, 600
PkrI	GCNGC	1 cut(s)	149
PleI	GAGTC	2 cut(s)	12, 206
PpsI	GAGTC	2 cut(s)	12, 206
PspPI	GGNCC	2 cut(s)	332, 517
PsrI	GAACNNNNNNTAC	2 cut(s)	53, 85
PstNI	CAGNNNCTG	1 cut(s)	115
PvuII	CAGCTG	1 cut(s)	147
RsaI	GTAC	2 cut(s)	62, 194
RsaNI	GTAC	2 cut(s)	61, 193
SaqAI	TTAA	3 cut(s)	165, 318, 423
SatI	GCNGC	1 cut(s)	148
Sau3AI	GATC	5 cut(s)	48, 151, 367, 460, 615
Sau96I	GGNCC	2 cut(s)	332, 517
SchI	GAGTC	2 cut(s)	13, 206
ScrFI	CCNGG	1 cut(s)	86
SduI	GDGCHC	1 cut(s)	351
SetI	ASST	9 cut(s)	29, 143, 149, 164, 286, 304, 393, 477, 561
SfcI	CTRYAG	1 cut(s)	142
SinI	GGWCC	1 cut(s)	332
Sse9I	AATT	3 cut(s)	166, 326, 363
SspI	AATATT	1 cut(s)	445
SspMI	CTAG	3 cut(s)	173, 245, 664
StyD4I	CCNGG	1 cut(s)	84
StyI	CCWWGG	1 cut(s)	207
TaaI	ACNGT	3 cut(s)	102, 197, 481
TaqI	TCGA	1 cut(s)	463
TaqII	GACCGA	1 cut(s)	512
TasI	AATT	3 cut(s)	166, 326, 363
TatI	WGTACW	1 cut(s)	60
TfiI	GAWTC	2 cut(s)	11, 600
Tru1I	TTAA	3 cut(s)	165, 318, 423
Tru9I	TTAA	3 cut(s)	165, 318, 423
TscAI	CASTG	1 cut(s)	107
TseI	GCWGC	1 cut(s)	147
TspDTI	ATGAA	4 cut(s)	7, 356, 368, 590
TspRI	CASTG	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	332
XapI	RAATTY	1 cut(s)	326
XbaI	TCTAGA	1 cut(s)	244
XmnI	GAANNNNTTC	1 cut(s)	504
XspI	CTAG	3 cut(s)	173, 245, 664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.