Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0009788

Physical Location & Seq

Genomic Coordinates Reverse (-)

44311191 .. 44315649

Gene Structure 4459 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG235600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGAGTCAGGAATTGTTCATATACAGCTTCGTGGCCAGAGGCATAATGATCTTGGCCGAGTACACCGAGTTCACCGGAAACTTCCCGGCGATTGCTTCTCAGTGCCTTCAGAGACTGCCCTCCACTAACAACAAGTTCACCTACAGCTGCGATCACCACACCTTCAATTTTCTTGTTGAAGATGGCTACGCGTACTGTGTTGTTGCCAAGGACTCAGTTGGCAAACAGATATCTATTGCATTTCTAGAACGAGTGAAGGCCGACTTTAGGAAAAGATATGGAGGTGGTAAAGCAGATACAGCTATTGCCAAAAGTCTTAACAAGGAATTTGGACCAATAATGAAAGAGCACATGAAGTATATAATTGATCACGCAGAAGAGATTGAAAAGCTATTGAAAGTGAAGGCGCAAGTTTCAGAAGTTAAAAGCATAATGTTGGAGAATATTGACAAGGTAAATCAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

155

Amino Acids

17.63

Weight (kDa)

7.7

Isoelectric Point (pI)

36.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	32 - 111	6.9e-21	Regulated-SNARE-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15780
fragaria_vesca	FvH4_4g17920 FvH4_4g17920 FvH4_4g17920
malus_domestica	MD13G1169400.v1.1 MD16G1170600.v1.1
prunus_persica	Prupe.1G137700_v2.0.a1 Prupe.1G137700_v2.0.a1
pyrus_communis	pycom13g14500 pycom16g14300
rosa_chinensis	RchiOBHm_Chr4g0422091
rosa_laevigata	RLG00000007637
rosa_multiflora	Rmu_sc0009286.1_g000001 Rmu_sc0013978.1_g000003
rosa_roxburghii	Rroxscaffold_5G00364170
rosa_rugosa	Rorug04G0177100
rosa_samantha	Rh4AG236700 Rh4BG239500 Rh4CG251400 Rh4DG235600
rosa_wichuraiana	Rw4G020460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	191
AcoI	YGGCCR	2 cut(s)	33, 54
AcsI	RAATTY	1 cut(s)	326
AcuI	CTGAAG	1 cut(s)	92
AfaI	GTAC	2 cut(s)	62, 194
AfiI	CCNNNNNNNGG	1 cut(s)	267
AflIII	ACRYGT	1 cut(s)	189
AgsI	TTSAA	4 cut(s)	166, 179, 386, 397
AluBI	AGCT	5 cut(s)	27, 147, 302, 391, 463
AluI	AGCT	5 cut(s)	27, 147, 302, 391, 463
Alw21I	GWGCWC	1 cut(s)	351
Alw26I	GTCTC	1 cut(s)	106
AlwNI	CAGNNNCTG	1 cut(s)	115
AoxI	GGCC	3 cut(s)	33, 54, 258
ApeKI	GCWGC	1 cut(s)	147
ApoI	RAATTY	1 cut(s)	326
AspLEI	GCGC	1 cut(s)	409
AspS9I	GGNCC	1 cut(s)	332
AsuC2I	CCSGG	1 cut(s)	86
AsuHPI	GGTGA	3 cut(s)	64, 130, 146
AvaII	GGWCC	1 cut(s)	332
BalI	TGGCCA	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	351
BbvI	GCAGC	1 cut(s)	134
BccI	CCATC	1 cut(s)	176
BclI	TGATCA	1 cut(s)	367
BcnI	CCSGG	1 cut(s)	86
BcoDI	GTCTC	1 cut(s)	106
BfaI	CTAG	1 cut(s)	245
BfmI	CTRYAG	1 cut(s)	142
BisI	GCNGC	1 cut(s)	148
BlsI	GCNGC	1 cut(s)	149
Bme1390I	CCNGG	1 cut(s)	86
Bme18I	GGWCC	1 cut(s)	332
BmgT120I	GGNCC	1 cut(s)	332
BmrFI	CCNGG	1 cut(s)	86
BpuMI	CCSGG	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	207
BsaWI	WCCGGW	1 cut(s)	74
Bsc4I	CCNNNNNNNGG	1 cut(s)	267
BseDI	CCNNGG	1 cut(s)	207
BseLI	CCNNNNNNNGG	1 cut(s)	267
BseMII	CTCAG	2 cut(s)	113, 228
BseXI	GCAGC	1 cut(s)	134
Bsh1236I	CGCG	1 cut(s)	191
BshFI	GGCC	3 cut(s)	35, 56, 260
BsiHKAI	GWGCWC	1 cut(s)	351
BsiSI	CCGG	2 cut(s)	75, 86
BslI	CCNNNNNNNGG	1 cut(s)	267
BsmAI	GTCTC	1 cut(s)	106
BsnI	GGCC	3 cut(s)	35, 56, 260
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp143I	GATC	3 cut(s)	48, 151, 367
BspANI	GGCC	3 cut(s)	35, 56, 260
BspCNI	CTCAG	2 cut(s)	112, 227
BspFNI	CGCG	1 cut(s)	191
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	3 cut(s)	48, 151, 367
BssT1I	CCWWGG	1 cut(s)	207
Bst4CI	ACNGT	1 cut(s)	197
Bst6I	CTCTTC	1 cut(s)	372
BstDEI	CTNAG	2 cut(s)	99, 214
BstFNI	CGCG	1 cut(s)	191
BstHHI	GCGC	1 cut(s)	409
BstKTI	GATC	3 cut(s)	51, 154, 370
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	3 cut(s)	48, 151, 367
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstSCI	CCNGG	1 cut(s)	84
BstSFI	CTRYAG	1 cut(s)	142
BstUI	CGCG	1 cut(s)	191
BstV1I	GCAGC	1 cut(s)	134
BsuRI	GGCC	3 cut(s)	35, 56, 260
BtsIMutI	CAGTG	1 cut(s)	107
CaiI	CAGNNNCTG	1 cut(s)	115
CfoI	GCGC	1 cut(s)	409
Cfr13I	GGNCC	1 cut(s)	332
Csp6I	GTAC	2 cut(s)	61, 193
CviAII	CATG	1 cut(s)	352
CviJI	RGCY	9 cut(s)	27, 35, 56, 147, 186, 260, 302, 391, 463
CviKI_1	RGCY	9 cut(s)	27, 35, 56, 147, 186, 260, 302, 391, 463
CviQI	GTAC	2 cut(s)	61, 193
DdeI	CTNAG	2 cut(s)	99, 214
DpnI	GATC	3 cut(s)	50, 153, 369
DpnII	GATC	3 cut(s)	48, 151, 367
EaeI	YGGCCR	2 cut(s)	33, 54
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
Eco130I	CCWWGG	1 cut(s)	207
Eco32I	GATATC	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	332
Eco57I	CTGAAG	1 cut(s)	92
EcoRV	GATATC	1 cut(s)	231
EcoT14I	CCWWGG	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	1 cut(s)	355
FaiI	YATR	8 cut(s)	20, 22, 44, 279, 353, 360, 362, 431
FalI	AAGNNNNNCTT	2 cut(s)	248, 280
FatI	CATG	1 cut(s)	351
FbaI	TGATCA	1 cut(s)	367
Fnu4HI	GCNGC	1 cut(s)	148
Fsp4HI	GCNGC	1 cut(s)	148
FspBI	CTAG	1 cut(s)	245
GlaI	GCGC	1 cut(s)	408
GluI	GCNGC	1 cut(s)	148
HaeIII	GGCC	3 cut(s)	35, 56, 260
HapII	CCGG	2 cut(s)	75, 86
HhaI	GCGC	1 cut(s)	409
Hin1II	CATG	1 cut(s)	355
Hin6I	GCGC	1 cut(s)	407
HinP1I	GCGC	1 cut(s)	407
HinfI	GANTC	2 cut(s)	4, 212
HpaII	CCGG	2 cut(s)	75, 86
HphI	GGTGA	3 cut(s)	64, 130, 146
Hpy166II	GTNNAC	3 cut(s)	63, 72, 138
Hpy188I	TCNGA	2 cut(s)	111, 418
Hpy188III	TCNNGA	2 cut(s)	8, 245
Hpy8I	GTNNAC	3 cut(s)	63, 72, 138
HpyAV	CCTTC	4 cut(s)	116, 172, 250, 397
HpyCH4III	ACNGT	1 cut(s)	197
HpyCH4V	TGCA	1 cut(s)	239
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpyF3I	CTNAG	2 cut(s)	99, 214
Hsp92II	CATG	1 cut(s)	355
HspAI	GCGC	1 cut(s)	407
Ksp22I	TGATCA	1 cut(s)	367
Kzo9I	GATC	3 cut(s)	48, 151, 367
LpnPI	CCDG	3 cut(s)	49, 88, 99
Lsp1109I	GCAGC	1 cut(s)	134
MaeI	CTAG	1 cut(s)	245
MalI	GATC	3 cut(s)	50, 153, 369
MboI	GATC	3 cut(s)	48, 151, 367
MboII	GAAGA	2 cut(s)	191, 389
MhlI	GDGCHC	1 cut(s)	351
MlsI	TGGCCA	1 cut(s)	35
MluCI	AATT	4 cut(s)	11, 166, 326, 363
MluI	ACGCGT	1 cut(s)	189
MluNI	TGGCCA	1 cut(s)	35
MlyI	GAGTC	2 cut(s)	13, 206
MmeI	TCCRAC	1 cut(s)	417
MnlI	CCTC	3 cut(s)	32, 130, 275
Mox20I	TGGCCA	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	35
MseI	TTAA	2 cut(s)	318, 423
Msp20I	TGGCCA	1 cut(s)	35
MspA1I	CMGCKG	2 cut(s)	147, 463
MspI	CCGG	2 cut(s)	75, 86
MspR9I	CCNGG	1 cut(s)	86
MvnI	CGCG	1 cut(s)	191
MwoI	GCNNNNNNNGC	1 cut(s)	299
NciI	CCSGG	1 cut(s)	86
NdeII	GATC	3 cut(s)	48, 151, 367
NlaIII	CATG	1 cut(s)	355
NmeAIII	GCCGAG	1 cut(s)	82
PkrI	GCNGC	1 cut(s)	149
PleI	GAGTC	2 cut(s)	12, 206
PpsI	GAGTC	2 cut(s)	12, 206
PspPI	GGNCC	1 cut(s)	332
PsrI	GAACNNNNNNTAC	2 cut(s)	53, 85
PstNI	CAGNNNCTG	1 cut(s)	115
PvuII	CAGCTG	2 cut(s)	147, 463
RsaI	GTAC	2 cut(s)	62, 194
RsaNI	GTAC	2 cut(s)	61, 193
SaqAI	TTAA	2 cut(s)	318, 423
SatI	GCNGC	1 cut(s)	148
Sau3AI	GATC	3 cut(s)	48, 151, 367
Sau96I	GGNCC	1 cut(s)	332
SchI	GAGTC	2 cut(s)	13, 206
ScrFI	CCNGG	1 cut(s)	86
SduI	GDGCHC	1 cut(s)	351
SetI	ASST	9 cut(s)	29, 143, 149, 164, 286, 304, 393, 456, 465
SfcI	CTRYAG	1 cut(s)	142
SinI	GGWCC	1 cut(s)	332
Sse9I	AATT	4 cut(s)	11, 166, 326, 363
SspI	AATATT	1 cut(s)	445
SspMI	CTAG	1 cut(s)	245
StyD4I	CCNGG	1 cut(s)	84
StyI	CCWWGG	1 cut(s)	207
TaaI	ACNGT	1 cut(s)	197
TasI	AATT	4 cut(s)	11, 166, 326, 363
TatI	WGTACW	1 cut(s)	60
Tru1I	TTAA	2 cut(s)	318, 423
Tru9I	TTAA	2 cut(s)	318, 423
TscAI	CASTG	1 cut(s)	107
TseI	GCWGC	1 cut(s)	147
TspDTI	ATGAA	3 cut(s)	7, 356, 368
TspRI	CASTG	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	332
XapI	RAATTY	1 cut(s)	326
XbaI	TCTAGA	1 cut(s)	244
XspI	CTAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.