Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009788

Physical Location & Seq

Genomic Coordinates Reverse (-)

47765146 .. 47771016

Gene Structure 5871 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39169

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGAGTCAGGAATCGTTCATATACAGCTTCGTGGCCAGAGGCATAATGATCTTGGCCGAGTTCACCGGAAACTTCCCGGCGATTGCTTCTCAGTGCCTTCAGAGACTGCCCTCCACTAACAACAAGTTCACCTACAGCTGCGATCACCACACCTTCAACTTTCTTGTTGAAGATGGCTACGCGTACTGTGTTGTTGCCAAGGACTCAGTTGGCAAACAGATATCTATTGCATTTCTAGAACGAGTGAAGGCCGACTTTAGGAAAAGATATGGAGGTGGTAAAGCAGATACAGCTATTGCCAAAAGTCTTAACAAGGAATTTGGACCAATAATGAAAGAGCACATGAAGTATATAATTGATCACGCAGAAGAGATTGAAAAGCTATTGAAAGTGAAGGCGCAAGTTTCAGAAGTTAAAAGCATAATGTTGGAGAATATTGACAAGGCTATTGATCGAGGGGAAAACCTTACTGTTCTTGTTGACAAGACCGAAACCCTTCGTTCTCAGGCCCAAGATTTCAAAAATAAAGGGACACAAATGAGAAGGAAGCTGTGGTATCAAAACATGAAAATAAAGTTGGTGGTTTTTGGAATCTTGTTACTTCTGATCTTGGTTATCTGGCTTTCTATTTGTCAGGGATTTGACTGCACAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

218

Amino Acids

24.88

Weight (kDa)

9.0

Isoelectric Point (pI)

36.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	29 - 108	1.6e-20	Regulated-SNARE-like domain
Synaptobrevin	PF00957	128 - 207	1.6e-26	Synaptobrevin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15780
fragaria_vesca	FvH4_4g17920 FvH4_4g17920 FvH4_4g17920
malus_domestica	MD13G1169400.v1.1 MD16G1170600.v1.1
prunus_persica	Prupe.1G137700_v2.0.a1 Prupe.1G137700_v2.0.a1
pyrus_communis	pycom13g14500 pycom16g14300
rosa_chinensis	RchiOBHm_Chr4g0422091
rosa_laevigata	RLG00000007637
rosa_multiflora	Rmu_sc0009286.1_g000001 Rmu_sc0013978.1_g000003
rosa_roxburghii	Rroxscaffold_5G00364170
rosa_rugosa	Rorug04G0177100
rosa_samantha	Rh4AG236700 Rh4BG239500 Rh4CG251400 Rh4DG235600
rosa_wichuraiana	Rw4G020460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	182
AcoI	YGGCCR	2 cut(s)	33, 54
AcsI	RAATTY	1 cut(s)	317
AcuI	CTGAAG	1 cut(s)	83
AfaI	GTAC	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	258
AflIII	ACRYGT	1 cut(s)	180
AgsI	TTSAA	5 cut(s)	157, 170, 377, 388, 520
AjuI	GAANNNNNNNTTGG	2 cut(s)	560, 592
AluBI	AGCT	5 cut(s)	27, 138, 293, 382, 550
AluI	AGCT	5 cut(s)	27, 138, 293, 382, 550
Alw21I	GWGCWC	1 cut(s)	342
Alw26I	GTCTC	1 cut(s)	97
AlwNI	CAGNNNCTG	1 cut(s)	106
AoxI	GGCC	4 cut(s)	33, 54, 249, 507
ApeKI	GCWGC	1 cut(s)	138
ApoI	RAATTY	1 cut(s)	317
Asp700I	GAANNNNTTC	1 cut(s)	495
AspLEI	GCGC	1 cut(s)	400
AspS9I	GGNCC	2 cut(s)	323, 508
AsuC2I	CCSGG	1 cut(s)	77
AsuHPI	GGTGA	3 cut(s)	55, 121, 137
AvaII	GGWCC	1 cut(s)	323
BalI	TGGCCA	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	342
BbvI	GCAGC	1 cut(s)	125
BccI	CCATC	1 cut(s)	167
BclI	TGATCA	1 cut(s)	358
BcnI	CCSGG	1 cut(s)	77
BcoDI	GTCTC	1 cut(s)	97
BfaI	CTAG	2 cut(s)	236, 655
BfmI	CTRYAG	1 cut(s)	133
BisI	GCNGC	1 cut(s)	139
BlsI	GCNGC	1 cut(s)	140
Bme1390I	CCNGG	1 cut(s)	77
Bme18I	GGWCC	1 cut(s)	323
BmgT120I	GGNCC	2 cut(s)	323, 508
BmrFI	CCNGG	1 cut(s)	77
BpuMI	CCSGG	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	198
BsaWI	WCCGGW	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	1 cut(s)	258
BseDI	CCNNGG	1 cut(s)	198
BseLI	CCNNNNNNNGG	1 cut(s)	258
BseMII	CTCAG	3 cut(s)	104, 219, 518
BseXI	GCAGC	1 cut(s)	125
BsgI	GTGCAG	1 cut(s)	631
Bsh1236I	CGCG	1 cut(s)	182
BshFI	GGCC	4 cut(s)	35, 56, 251, 509
BsiHKAI	GWGCWC	1 cut(s)	342
BsiSI	CCGG	2 cut(s)	66, 77
BslFI	GGGAC	1 cut(s)	544
BslI	CCNNNNNNNGG	1 cut(s)	258
BsmAI	GTCTC	1 cut(s)	97
BsmFI	GGGAC	1 cut(s)	544
BsnI	GGCC	4 cut(s)	35, 56, 251, 509
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp143I	GATC	5 cut(s)	48, 142, 358, 451, 606
BspANI	GGCC	4 cut(s)	35, 56, 251, 509
BspCNI	CTCAG	3 cut(s)	103, 218, 517
BspFNI	CGCG	1 cut(s)	182
BssECI	CCNNGG	1 cut(s)	198
BssMI	GATC	5 cut(s)	48, 142, 358, 451, 606
BssT1I	CCWWGG	1 cut(s)	198
Bst4CI	ACNGT	2 cut(s)	188, 472
Bst6I	CTCTTC	1 cut(s)	363
BstDEI	CTNAG	3 cut(s)	90, 205, 504
BstFNI	CGCG	1 cut(s)	182
BstHHI	GCGC	1 cut(s)	400
BstKTI	GATC	5 cut(s)	51, 145, 361, 454, 609
BstMAI	GTCTC	1 cut(s)	97
BstMBI	GATC	5 cut(s)	48, 142, 358, 451, 606
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstSCI	CCNGG	1 cut(s)	75
BstSFI	CTRYAG	1 cut(s)	133
BstUI	CGCG	1 cut(s)	182
BstV1I	GCAGC	1 cut(s)	125
BsuRI	GGCC	4 cut(s)	35, 56, 251, 509
BtsIMutI	CAGTG	1 cut(s)	98
CaiI	CAGNNNCTG	1 cut(s)	106
CfoI	GCGC	1 cut(s)	400
Cfr13I	GGNCC	2 cut(s)	323, 508
Csp6I	GTAC	1 cut(s)	184
CviAII	CATG	2 cut(s)	343, 565
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	3 cut(s)	90, 205, 504
DpnI	GATC	5 cut(s)	50, 144, 360, 453, 608
DpnII	GATC	5 cut(s)	48, 142, 358, 451, 606
EaeI	YGGCCR	2 cut(s)	33, 54
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
Eco130I	CCWWGG	1 cut(s)	198
Eco32I	GATATC	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	323
Eco57I	CTGAAG	1 cut(s)	83
EcoRV	GATATC	1 cut(s)	222
EcoT14I	CCWWGG	1 cut(s)	198
ErhI	CCWWGG	1 cut(s)	198
FaeI	CATG	2 cut(s)	346, 568
FaiI	YATR	9 cut(s)	20, 22, 44, 270, 344, 351, 353, 422, 566
FalI	AAGNNNNNCTT	2 cut(s)	239, 271
FaqI	GGGAC	1 cut(s)	544
FatI	CATG	2 cut(s)	342, 564
FbaI	TGATCA	1 cut(s)	358
Fnu4HI	GCNGC	1 cut(s)	139
Fsp4HI	GCNGC	1 cut(s)	139
FspBI	CTAG	2 cut(s)	236, 655
GlaI	GCGC	1 cut(s)	399
GluI	GCNGC	1 cut(s)	139
HaeIII	GGCC	4 cut(s)	35, 56, 251, 509
HapII	CCGG	2 cut(s)	66, 77
HhaI	GCGC	1 cut(s)	400
Hin1II	CATG	2 cut(s)	346, 568
Hin6I	GCGC	1 cut(s)	398
HinP1I	GCGC	1 cut(s)	398
HincII	GTYRAC	1 cut(s)	481
HindII	GTYRAC	1 cut(s)	481
HinfI	GANTC	4 cut(s)	4, 11, 203, 591
HpaII	CCGG	2 cut(s)	66, 77
HphI	GGTGA	3 cut(s)	55, 121, 137
Hpy166II	GTNNAC	3 cut(s)	63, 129, 481
Hpy188I	TCNGA	3 cut(s)	102, 409, 606
Hpy188III	TCNNGA	2 cut(s)	8, 236
Hpy8I	GTNNAC	3 cut(s)	63, 129, 481
HpyAV	CCTTC	6 cut(s)	107, 163, 241, 388, 506, 537
HpyCH4III	ACNGT	2 cut(s)	188, 472
HpyCH4V	TGCA	2 cut(s)	230, 648
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	3 cut(s)	90, 205, 504
Hsp92II	CATG	2 cut(s)	346, 568
HspAI	GCGC	1 cut(s)	398
Ksp22I	TGATCA	1 cut(s)	358
Kzo9I	GATC	5 cut(s)	48, 142, 358, 451, 606
LpnPI	CCDG	6 cut(s)	49, 79, 90, 491, 604, 620
Lsp1109I	GCAGC	1 cut(s)	125
MaeI	CTAG	2 cut(s)	236, 655
MaeIII	GTNAC	1 cut(s)	597
MalI	GATC	5 cut(s)	50, 144, 360, 453, 608
MboI	GATC	5 cut(s)	48, 142, 358, 451, 606
MboII	GAAGA	2 cut(s)	182, 380
MhlI	GDGCHC	1 cut(s)	342
MlsI	TGGCCA	1 cut(s)	35
MluCI	AATT	2 cut(s)	317, 354
MluI	ACGCGT	1 cut(s)	180
MluNI	TGGCCA	1 cut(s)	35
MlyI	GAGTC	2 cut(s)	13, 197
MmeI	TCCRAC	1 cut(s)	408
MnlI	CCTC	4 cut(s)	32, 121, 266, 449
Mox20I	TGGCCA	1 cut(s)	35
MroXI	GAANNNNTTC	1 cut(s)	495
MscI	TGGCCA	1 cut(s)	35
MseI	TTAA	2 cut(s)	309, 414
Msp20I	TGGCCA	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	138
MspI	CCGG	2 cut(s)	66, 77
MspR9I	CCNGG	1 cut(s)	77
MvnI	CGCG	1 cut(s)	182
MwoI	GCNNNNNNNGC	1 cut(s)	290
NciI	CCSGG	1 cut(s)	77
NdeII	GATC	5 cut(s)	48, 142, 358, 451, 606
NlaIII	CATG	2 cut(s)	346, 568
NmeAIII	GCCGAG	1 cut(s)	82
PdmI	GAANNNNTTC	1 cut(s)	495
PfeI	GAWTC	2 cut(s)	11, 591
PkrI	GCNGC	1 cut(s)	140
PleI	GAGTC	2 cut(s)	12, 197
PpsI	GAGTC	2 cut(s)	12, 197
PspPI	GGNCC	2 cut(s)	323, 508
PstNI	CAGNNNCTG	1 cut(s)	106
PvuII	CAGCTG	1 cut(s)	138
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
SaqAI	TTAA	2 cut(s)	309, 414
SatI	GCNGC	1 cut(s)	139
Sau3AI	GATC	5 cut(s)	48, 142, 358, 451, 606
Sau96I	GGNCC	2 cut(s)	323, 508
SchI	GAGTC	2 cut(s)	13, 197
ScrFI	CCNGG	1 cut(s)	77
SduI	GDGCHC	1 cut(s)	342
SetI	ASST	9 cut(s)	29, 134, 140, 155, 277, 295, 384, 468, 552
SfcI	CTRYAG	1 cut(s)	133
SinI	GGWCC	1 cut(s)	323
Sse9I	AATT	2 cut(s)	317, 354
SspI	AATATT	1 cut(s)	436
SspMI	CTAG	2 cut(s)	236, 655
StyD4I	CCNGG	1 cut(s)	75
StyI	CCWWGG	1 cut(s)	198
TaaI	ACNGT	2 cut(s)	188, 472
TaqI	TCGA	1 cut(s)	454
TaqII	GACCGA	1 cut(s)	503
TasI	AATT	2 cut(s)	317, 354
TfiI	GAWTC	2 cut(s)	11, 591
Tru1I	TTAA	2 cut(s)	309, 414
Tru9I	TTAA	2 cut(s)	309, 414
TscAI	CASTG	1 cut(s)	98
TseI	GCWGC	1 cut(s)	138
TspDTI	ATGAA	4 cut(s)	7, 347, 359, 581
TspRI	CASTG	1 cut(s)	98
VpaK11BI	GGWCC	1 cut(s)	323
XapI	RAATTY	1 cut(s)	317
XbaI	TCTAGA	1 cut(s)	235
XmnI	GAANNNNTTC	1 cut(s)	495
XspI	CTAG	2 cut(s)	236, 655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.