Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009286.1

Orthogroup ID

OG0009788

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1226

Gene Structure 1226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009286.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 190 bp

atgagtcaggaatcgttcatatacagcttcgtggccagaggcataatgatcttggccgagtacaccgagttcaccggaaacttcccggcgattgcttctcagtgccttcagagactgccctccactaacaacaagttcacctacagctgcgatcaccacaccttcaattttcttgttgaagatggctacg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

63

Amino Acids

7.25

Weight (kDa)

4.97

Isoelectric Point (pI)

54.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15780
fragaria_vesca	FvH4_4g17920 FvH4_4g17920 FvH4_4g17920
malus_domestica	MD13G1169400.v1.1 MD16G1170600.v1.1
prunus_persica	Prupe.1G137700_v2.0.a1 Prupe.1G137700_v2.0.a1
pyrus_communis	pycom13g14500 pycom16g14300
rosa_chinensis	RchiOBHm_Chr4g0422091
rosa_laevigata	RLG00000007637
rosa_multiflora	Rmu_sc0009286.1_g000001 Rmu_sc0013978.1_g000003
rosa_roxburghii	Rroxscaffold_5G00364170
rosa_rugosa	Rorug04G0177100
rosa_samantha	Rh4AG236700 Rh4BG239500 Rh4CG251400 Rh4DG235600
rosa_wichuraiana	Rw4G020460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	33, 54
AcuI	CTGAAG	1 cut(s)	92
AfaI	GTAC	1 cut(s)	62
AgsI	TTSAA	2 cut(s)	166, 179
AluBI	AGCT	2 cut(s)	27, 147
AluI	AGCT	2 cut(s)	27, 147
Alw26I	GTCTC	1 cut(s)	106
AlwNI	CAGNNNCTG	1 cut(s)	115
AoxI	GGCC	2 cut(s)	33, 54
ApeKI	GCWGC	1 cut(s)	147
AsuC2I	CCSGG	1 cut(s)	86
AsuHPI	GGTGA	3 cut(s)	64, 130, 146
BalI	TGGCCA	1 cut(s)	35
BbvI	GCAGC	1 cut(s)	134
BccI	CCATC	1 cut(s)	176
BcnI	CCSGG	1 cut(s)	86
BcoDI	GTCTC	1 cut(s)	106
BfmI	CTRYAG	1 cut(s)	142
BisI	GCNGC	1 cut(s)	148
BlsI	GCNGC	1 cut(s)	149
Bme1390I	CCNGG	1 cut(s)	86
BmrFI	CCNGG	1 cut(s)	86
BpuMI	CCSGG	1 cut(s)	86
BsaWI	WCCGGW	1 cut(s)	74
BseMII	CTCAG	1 cut(s)	113
BseXI	GCAGC	1 cut(s)	134
BshFI	GGCC	2 cut(s)	35, 56
BsiSI	CCGG	2 cut(s)	75, 86
BsmAI	GTCTC	1 cut(s)	106
BsnI	GGCC	2 cut(s)	35, 56
Bsp143I	GATC	2 cut(s)	48, 151
BspANI	GGCC	2 cut(s)	35, 56
BspCNI	CTCAG	1 cut(s)	112
BssMI	GATC	2 cut(s)	48, 151
BstDEI	CTNAG	1 cut(s)	99
BstKTI	GATC	2 cut(s)	51, 154
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	2 cut(s)	48, 151
BstSCI	CCNGG	1 cut(s)	84
BstSFI	CTRYAG	1 cut(s)	142
BstV1I	GCAGC	1 cut(s)	134
BsuRI	GGCC	2 cut(s)	35, 56
BtsIMutI	CAGTG	1 cut(s)	107
CaiI	CAGNNNCTG	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	61
CviJI	RGCY	5 cut(s)	27, 35, 56, 147, 186
CviKI_1	RGCY	5 cut(s)	27, 35, 56, 147, 186
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	1 cut(s)	99
DpnI	GATC	2 cut(s)	50, 153
DpnII	GATC	2 cut(s)	48, 151
EaeI	YGGCCR	2 cut(s)	33, 54
Eco57I	CTGAAG	1 cut(s)	92
FaiI	YATR	3 cut(s)	20, 22, 44
Fnu4HI	GCNGC	1 cut(s)	148
Fsp4HI	GCNGC	1 cut(s)	148
GluI	GCNGC	1 cut(s)	148
HaeIII	GGCC	2 cut(s)	35, 56
HapII	CCGG	2 cut(s)	75, 86
HinfI	GANTC	2 cut(s)	4, 11
HpaII	CCGG	2 cut(s)	75, 86
HphI	GGTGA	3 cut(s)	64, 130, 146
Hpy166II	GTNNAC	3 cut(s)	63, 72, 138
Hpy188I	TCNGA	1 cut(s)	111
Hpy188III	TCNNGA	1 cut(s)	8
Hpy8I	GTNNAC	3 cut(s)	63, 72, 138
HpyAV	CCTTC	2 cut(s)	116, 172
HpyF3I	CTNAG	1 cut(s)	99
Kzo9I	GATC	2 cut(s)	48, 151
LpnPI	CCDG	3 cut(s)	49, 88, 99
Lsp1109I	GCAGC	1 cut(s)	134
MalI	GATC	2 cut(s)	50, 153
MboI	GATC	2 cut(s)	48, 151
MlsI	TGGCCA	1 cut(s)	35
MluCI	AATT	1 cut(s)	166
MluNI	TGGCCA	1 cut(s)	35
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	2 cut(s)	32, 130
Mox20I	TGGCCA	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	35
Msp20I	TGGCCA	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	147
MspI	CCGG	2 cut(s)	75, 86
MspR9I	CCNGG	1 cut(s)	86
NciI	CCSGG	1 cut(s)	86
NdeII	GATC	2 cut(s)	48, 151
NmeAIII	GCCGAG	1 cut(s)	82
PfeI	GAWTC	1 cut(s)	11
PkrI	GCNGC	1 cut(s)	149
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PsrI	GAACNNNNNNTAC	2 cut(s)	53, 85
PstNI	CAGNNNCTG	1 cut(s)	115
PvuII	CAGCTG	1 cut(s)	147
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SatI	GCNGC	1 cut(s)	148
Sau3AI	GATC	2 cut(s)	48, 151
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	86
SetI	ASST	4 cut(s)	29, 143, 149, 164
SfcI	CTRYAG	1 cut(s)	142
Sse9I	AATT	1 cut(s)	166
StyD4I	CCNGG	1 cut(s)	84
TasI	AATT	1 cut(s)	166
TatI	WGTACW	1 cut(s)	60
TfiI	GAWTC	1 cut(s)	11
TscAI	CASTG	1 cut(s)	107
TseI	GCWGC	1 cut(s)	147
TspDTI	ATGAA	1 cut(s)	7
TspRI	CASTG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.