Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0010331

Physical Location & Seq

Genomic Coordinates Forward (+)

25377804 .. 25379431

Gene Structure 1628 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1243200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGGGGAGCCATCACTTTTTGATAAAATGATCAGCCATCTCCGTGCAACATCCAAGTATTATACTGGTTATCCAAAGGATCTTGGGCCATCAAGGGTCATCCATTTTACATCAGAACGCGAGTTTGTCCAGCTTCTTCATGAAGGCCACCCTGTGGTTGTTGCATTCACCCTCAGGTGTAATCTCACAAAACATCTTGATGGAGTATTGGAGGAAGCTGCGGCTGAGTTTTATCCACATGTAAAATTTATGCACGTCGAATGCCCAAAATATCTTGGTTTCTGTATAACACGGCAGAGGAAGGAATATCCATTTATAGAAATATTTCATAGTCCACAACAAGCACAGAACGAGGGAAGGGTTTCTGATGCAAATATTACAAAGTACTCTGTGAAAGTTCTACCAATAAGTTTCCAAGCTTGCTTACAAATTATGATGTTATTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

17.2

Weight (kDa)

7.74

Isoelectric Point (pI)

58.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57230 AT5G57230
fragaria_vesca	FvH4_4g07380
malus_domestica	MD13G1243200.v1.1 MD13G1243300.v1.1 MD16G1249800.v1.1
prunus_persica	Prupe.1G076700_v2.0.a1
pyrus_communis	pycom13g21470 pycom16g20960
rosa_chinensis	RchiOBHm_Chr4g0399821
rosa_laevigata	RLG00000009241
rosa_multiflora	Rmu_sc0005299.1_g000006
rosa_roxburghii	Rroxscaffold_5G00344700
rosa_rugosa	Rorug04G0018800 Rorug04G0018900 Rorug04G0019000
rosa_samantha	Rh4AG096500 Rh4BG093900 Rh4CG105600 Rh4DG090500
rosa_wichuraiana	Rw4G007970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	154
AccII	CGCG	1 cut(s)	120
AciI	CCGC	1 cut(s)	221
AclWI	GGATC	1 cut(s)	87
AcsI	RAATTY	1 cut(s)	245
AdeI	CACNNNGTG	1 cut(s)	154
AfaI	GTAC	1 cut(s)	386
AfiI	CCNNNNNNNGG	1 cut(s)	154
AflIII	ACRYGT	1 cut(s)	238
AjiI	CACGTC	1 cut(s)	256
AluBI	AGCT	3 cut(s)	133, 218, 419
AluI	AGCT	3 cut(s)	133, 218, 419
AlwI	GGATC	1 cut(s)	87
AoxI	GGCC	2 cut(s)	86, 145
ApeKI	GCWGC	1 cut(s)	218
ApoI	RAATTY	1 cut(s)	245
Asp700I	GAANNNNTTC	2 cut(s)	324, 361
AspS9I	GGNCC	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	160
AxyI	CCTNAGG	1 cut(s)	173
BbvI	GCAGC	1 cut(s)	205
BccI	CCATC	4 cut(s)	19, 45, 97, 194
BceAI	ACGGC	1 cut(s)	308
BclI	TGATCA	1 cut(s)	30
BisI	GCNGC	2 cut(s)	219, 222
BlsI	GCNGC	2 cut(s)	220, 223
BmcAI	AGTACT	1 cut(s)	386
BmgBI	CACGTC	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	1 cut(s)	9
BmsI	GCATC	1 cut(s)	358
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse1I	ACTGG	1 cut(s)	70
Bse21I	CCTNAGG	1 cut(s)	173
BseGI	GGATG	2 cut(s)	50, 99
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMII	CTCAG	2 cut(s)	187, 216
BseNI	ACTGG	1 cut(s)	70
BseXI	GCAGC	1 cut(s)	205
Bsh1236I	CGCG	1 cut(s)	120
BshFI	GGCC	2 cut(s)	88, 147
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmI	GAATGC	2 cut(s)	164, 266
BsnI	GGCC	2 cut(s)	88, 147
Bsp143I	GATC	2 cut(s)	30, 79
BspACI	CCGC	1 cut(s)	221
BspANI	GGCC	2 cut(s)	88, 147
BspCNI	CTCAG	2 cut(s)	186, 217
BspFNI	CGCG	1 cut(s)	120
BspHI	TCATGA	1 cut(s)	139
BspLI	GGNNCC	1 cut(s)	9
BspPI	GGATC	1 cut(s)	87
BsrI	ACTGG	1 cut(s)	70
BssMI	GATC	2 cut(s)	30, 79
BstC8I	GCNNGC	1 cut(s)	421
BstDEI	CTNAG	2 cut(s)	173, 225
BstF5I	GGATG	2 cut(s)	50, 99
BstFNI	CGCG	1 cut(s)	120
BstKTI	GATC	2 cut(s)	33, 82
BstMBI	GATC	2 cut(s)	30, 79
BstNSI	RCATGY	1 cut(s)	242
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	1 cut(s)	205
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
Bsu36I	CCTNAGG	1 cut(s)	173
BsuRI	GGCC	2 cut(s)	88, 147
BtrI	CACGTC	1 cut(s)	256
BtsCI	GGATG	2 cut(s)	50, 99
Cac8I	GCNNGC	1 cut(s)	421
CciI	TCATGA	1 cut(s)	139
Cfr13I	GGNCC	1 cut(s)	86
Csp6I	GTAC	1 cut(s)	385
CviAII	CATG	2 cut(s)	140, 239
CviJI	RGCY	8 cut(s)	10, 36, 88, 133, 147, 218, 224, 419
CviKI_1	RGCY	8 cut(s)	10, 36, 88, 133, 147, 218, 224, 419
CviQI	GTAC	1 cut(s)	385
DdeI	CTNAG	2 cut(s)	173, 225
DpnI	GATC	2 cut(s)	32, 81
DpnII	GATC	2 cut(s)	30, 79
DraIII	CACNNNGTG	1 cut(s)	154
Eco81I	CCTNAGG	1 cut(s)	173
FaeI	CATG	2 cut(s)	143, 242
FaiI	YATR	8 cut(s)	63, 141, 240, 251, 287, 317, 330, 434
FatI	CATG	2 cut(s)	139, 238
FbaI	TGATCA	1 cut(s)	30
Fnu4HI	GCNGC	2 cut(s)	219, 222
FokI	GGATG	2 cut(s)	37, 86
Fsp4HI	GCNGC	2 cut(s)	219, 222
GluI	GCNGC	2 cut(s)	219, 222
HaeIII	GGCC	2 cut(s)	88, 147
Hin1II	CATG	2 cut(s)	143, 242
HindIII	AAGCTT	1 cut(s)	417
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	1 cut(s)	335
Hpy188I	TCNGA	2 cut(s)	115, 367
Hpy188III	TCNNGA	2 cut(s)	140, 197
Hpy8I	GTNNAC	1 cut(s)	335
Hpy99I	CGWCG	1 cut(s)	260
HpyAV	CCTTC	3 cut(s)	137, 295, 351
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	4 cut(s)	47, 164, 253, 371
HpyF3I	CTNAG	2 cut(s)	173, 225
HpySE526I	ACGT	1 cut(s)	255
Hsp92II	CATG	2 cut(s)	143, 242
Ksp22I	TGATCA	1 cut(s)	30
Kzo9I	GATC	2 cut(s)	30, 79
LmnI	GCTCC	1 cut(s)	7
LpnPI	CCDG	4 cut(s)	51, 143, 160, 165
Lsp1109I	GCAGC	1 cut(s)	205
LweI	GCATC	1 cut(s)	358
MaeII	ACGT	1 cut(s)	255
MalI	GATC	2 cut(s)	32, 81
MboI	GATC	2 cut(s)	30, 79
MboII	GAAGA	1 cut(s)	128
MflI	RGATCY	1 cut(s)	79
MluCI	AATT	2 cut(s)	245, 429
MnlI	CCTC	4 cut(s)	182, 205, 291, 346
MroXI	GAANNNNTTC	2 cut(s)	324, 361
MseI	TTAA	1 cut(s)	448
MslI	CAYNNNNRTG	2 cut(s)	42, 198
Mva1269I	GAATGC	2 cut(s)	164, 266
MvnI	CGCG	1 cut(s)	120
NdeII	GATC	2 cut(s)	30, 79
NlaIII	CATG	2 cut(s)	143, 242
NlaIV	GGNNCC	1 cut(s)	9
NspI	RCATGY	1 cut(s)	242
PagI	TCATGA	1 cut(s)	139
PciI	ACATGT	1 cut(s)	238
PctI	GAATGC	2 cut(s)	164, 266
PdmI	GAANNNNTTC	2 cut(s)	324, 361
PflMI	CCANNNNNTGG	1 cut(s)	154
PkrI	GCNGC	2 cut(s)	220, 223
PscI	ACATGT	1 cut(s)	238
PspN4I	GGNNCC	1 cut(s)	9
PspPI	GGNCC	1 cut(s)	86
PsuI	RGATCY	1 cut(s)	79
RsaI	GTAC	1 cut(s)	386
RsaNI	GTAC	1 cut(s)	385
RseI	CAYNNNNRTG	2 cut(s)	42, 198
SaqAI	TTAA	1 cut(s)	448
SatI	GCNGC	2 cut(s)	219, 222
Sau3AI	GATC	2 cut(s)	30, 79
Sau96I	GGNCC	1 cut(s)	86
ScaI	AGTACT	1 cut(s)	386
SetI	ASST	5 cut(s)	135, 179, 220, 258, 421
SfaNI	GCATC	1 cut(s)	358
SmiMI	CAYNNNNRTG	2 cut(s)	42, 198
Sse9I	AATT	2 cut(s)	245, 429
SsiI	CCGC	1 cut(s)	221
SspI	AATATT	2 cut(s)	324, 376
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	1 cut(s)	258
TasI	AATT	2 cut(s)	245, 429
TatI	WGTACW	1 cut(s)	384
TauI	GCSGC	1 cut(s)	224
Tru1I	TTAA	1 cut(s)	448
Tru9I	TTAA	1 cut(s)	448
TseI	GCWGC	1 cut(s)	218
TspDTI	ATGAA	3 cut(s)	128, 156, 317
TspGWI	ACGGA	1 cut(s)	32
Van91I	CCANNNNNTGG	1 cut(s)	154
XapI	RAATTY	1 cut(s)	245
XceI	RCATGY	1 cut(s)	242
XmnI	GAANNNNTTC	2 cut(s)	324, 361
ZrmI	AGTACT	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.