RLG00000009241

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0010331
Physical Location & Seq
Reverse (-)
49608250 .. 49610531
2282 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009241

Sequence Viewer

Length: 456 bp
ATGATCAGTCATCTACGTGCAACATCCAAGTATTATACTGGTTATCCAAAGGATCTCGGGCCATCAAGGGTTATCCATTTTACATCAGAACGTGAATTTGTTCAGCTCCTTCATGAAGGTTATCCTGTGGTTGTGGCATTCACCATCAGGTGTAACCTTACAAAACATCTTGACAAAGTATTAGAGGAAGCTGCAGCTGAGTTTTATCCACATGTGAAATTTATGCGTGTTGAGTGTCCAAAATATCCTGGTTTCTGTATTACACGGCAGAAGAAGGAATATCCATTTATAGAAGTATTTCATAGTCCAGAACAAACATCTAGCCAGGGAAGGGTTGCTGATCCAAATATTACAAAGTACTCGGTGAAGGTTCTACCTTTCCATAACGACACAAGTGCCTATGGATTTAGAGAATTCTTCAGGCGTAATGGAATACGATCATCAAATCCACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

17.6

Weight (kDa)

9.28

Isoelectric Point (pI)

51.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 60, 335
AcsI RAATTY 3 cut(s) 95, 218, 413
AcuI CTGAAG 1 cut(s) 403
AfaI GTAC 1 cut(s) 359
AfiI CCNNNNNNNGG 1 cut(s) 331
AflIII ACRYGT 1 cut(s) 211
AjnI CCWGG 2 cut(s) 247, 324
AluBI AGCT 3 cut(s) 106, 191, 197
AluI AGCT 3 cut(s) 106, 191, 197
AlwI GGATC 2 cut(s) 60, 335
Ama87I CYCGRG 1 cut(s) 56
AoxI GGCC 1 cut(s) 59
ApeKI GCWGC 2 cut(s) 191, 194
ApoI RAATTY 3 cut(s) 95, 218, 413
Asp700I GAANNNNTTC 2 cut(s) 99, 297
AspS9I GGNCC 1 cut(s) 59
AsuHPI GGTGA 2 cut(s) 133, 376
AvaI CYCGRG 1 cut(s) 56
BbvI GCAGC 2 cut(s) 178, 206
BccI CCATC 2 cut(s) 70, 152
BceAI ACGGC 1 cut(s) 281
BcgI CGANNNNNNTGC 2 cut(s) 377, 411
BciT130I CCWGG 2 cut(s) 249, 326
BclI TGATCA 1 cut(s) 3
BfaI CTAG 1 cut(s) 321
BfmI CTRYAG 1 cut(s) 192
BisI GCNGC 2 cut(s) 192, 195
BlsI GCNGC 2 cut(s) 193, 196
BmcAI AGTACT 1 cut(s) 359
Bme1390I CCNGG 2 cut(s) 249, 326
BmeT110I CYCGRG 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 59
BmrFI CCNGG 2 cut(s) 249, 326
BsaAI YACGTR 1 cut(s) 17
BsaJI CCNNGG 1 cut(s) 325
Bsc4I CCNNNNNNNGG 1 cut(s) 331
Bse1I ACTGG 1 cut(s) 43
BseBI CCWGG 2 cut(s) 249, 326
BseDI CCNNGG 1 cut(s) 325
BseGI GGATG 1 cut(s) 23
BseLI CCNNNNNNNGG 1 cut(s) 331
BseMII CTCAG 1 cut(s) 189
BseNI ACTGG 1 cut(s) 43
BseXI GCAGC 2 cut(s) 178, 206
BshFI GGCC 1 cut(s) 61
BsiHKCI CYCGRG 1 cut(s) 56
BslI CCNNNNNNNGG 1 cut(s) 331
BsmI GAATGC 1 cut(s) 137
BsnI GGCC 1 cut(s) 61
BsoBI CYCGRG 1 cut(s) 56
Bsp143I GATC 4 cut(s) 3, 52, 340, 437
BspANI GGCC 1 cut(s) 61
BspCNI CTCAG 1 cut(s) 190
BspHI TCATGA 1 cut(s) 112
BspMAI CTGCAG 1 cut(s) 196
BspPI GGATC 2 cut(s) 60, 335
BsrI ACTGG 1 cut(s) 43
BssECI CCNNGG 1 cut(s) 325
BssMI GATC 4 cut(s) 3, 52, 340, 437
Bst2UI CCWGG 2 cut(s) 249, 326
Bst4CI ACNGT 1 cut(s) 453
BstBAI YACGTR 1 cut(s) 17
BstDEI CTNAG 1 cut(s) 198
BstF5I GGATG 1 cut(s) 23
BstKTI GATC 4 cut(s) 6, 55, 343, 440
BstMBI GATC 4 cut(s) 3, 52, 340, 437
BstNI CCWGG 2 cut(s) 249, 326
BstNSI RCATGY 1 cut(s) 215
BstSCI CCNGG 2 cut(s) 247, 324
BstSFI CTRYAG 1 cut(s) 192
BstV1I GCAGC 2 cut(s) 178, 206
BstX2I RGATCY 1 cut(s) 52
BstYI RGATCY 1 cut(s) 52
BsuRI GGCC 1 cut(s) 61
BtsCI GGATG 1 cut(s) 23
CciI TCATGA 1 cut(s) 112
Cfr13I GGNCC 1 cut(s) 59
Csp6I GTAC 1 cut(s) 358
CviAII CATG 2 cut(s) 113, 212
CviJI RGCY 5 cut(s) 61, 106, 191, 197, 324
CviKI_1 RGCY 5 cut(s) 61, 106, 191, 197, 324
CviQI GTAC 1 cut(s) 358
DdeI CTNAG 1 cut(s) 198
DpnI GATC 4 cut(s) 5, 54, 342, 439
DpnII GATC 4 cut(s) 3, 52, 340, 437
Eco57I CTGAAG 1 cut(s) 403
Eco88I CYCGRG 1 cut(s) 56
EcoRI GAATTC 1 cut(s) 413
EcoRII CCWGG 2 cut(s) 247, 324
FaeI CATG 2 cut(s) 116, 215
FaiI YATR 8 cut(s) 36, 114, 213, 224, 290, 303, 384, 402
FatI CATG 2 cut(s) 112, 211
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 2 cut(s) 192, 195
FokI GGATG 1 cut(s) 10
Fsp4HI GCNGC 2 cut(s) 192, 195
FspBI CTAG 1 cut(s) 321
GluI GCNGC 2 cut(s) 192, 195
HaeIII GGCC 1 cut(s) 61
Hin1II CATG 2 cut(s) 116, 215
HphI GGTGA 2 cut(s) 133, 376
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 3 cut(s) 113, 170, 308
HpyAV CCTTC 5 cut(s) 110, 119, 268, 324, 361
HpyCH4III ACNGT 1 cut(s) 453
HpyCH4IV ACGT 2 cut(s) 16, 91
HpyCH4V TGCA 2 cut(s) 20, 194
HpyF3I CTNAG 1 cut(s) 198
HpySE526I ACGT 2 cut(s) 16, 91
Hsp92II CATG 2 cut(s) 116, 215
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 4 cut(s) 3, 52, 340, 437
LmnI GCTCC 1 cut(s) 111
LpnPI CCDG 9 cut(s) 24, 133, 138, 234, 261, 311, 321, 338, 406
Lsp1109I GCAGC 2 cut(s) 178, 206
MaeI CTAG 1 cut(s) 321
MaeII ACGT 2 cut(s) 16, 91
MaeIII GTNAC 1 cut(s) 152
MalI GATC 4 cut(s) 5, 54, 342, 439
MboI GATC 4 cut(s) 3, 52, 340, 437
MboII GAAGA 2 cut(s) 283, 409
MflI RGATCY 1 cut(s) 52
MluCI AATT 3 cut(s) 95, 218, 413
MnlI CCTC 1 cut(s) 178
MroXI GAANNNNTTC 2 cut(s) 99, 297
MslI CAYNNNNRTG 1 cut(s) 15
MspA1I CMGCKG 1 cut(s) 197
MspR9I CCNGG 2 cut(s) 249, 326
Mva1269I GAATGC 1 cut(s) 137
MvaI CCWGG 2 cut(s) 249, 326
NdeII GATC 4 cut(s) 3, 52, 340, 437
NlaIII CATG 2 cut(s) 116, 215
NspI RCATGY 1 cut(s) 215
PagI TCATGA 1 cut(s) 112
PciI ACATGT 1 cut(s) 211
PctI GAATGC 1 cut(s) 137
PdmI GAANNNNTTC 2 cut(s) 99, 297
PkrI GCNGC 2 cut(s) 193, 196
Ppu21I YACGTR 1 cut(s) 17
PscI ACATGT 1 cut(s) 211
Psp6I CCWGG 2 cut(s) 247, 324
PspGI CCWGG 2 cut(s) 247, 324
PspPI GGNCC 1 cut(s) 59
PstI CTGCAG 1 cut(s) 196
PsuI RGATCY 1 cut(s) 52
PvuII CAGCTG 1 cut(s) 197
RsaI GTAC 1 cut(s) 359
RsaNI GTAC 1 cut(s) 358
RseI CAYNNNNRTG 1 cut(s) 15
SatI GCNGC 2 cut(s) 192, 195
Sau3AI GATC 4 cut(s) 3, 52, 340, 437
Sau96I GGNCC 1 cut(s) 59
ScaI AGTACT 1 cut(s) 359
ScrFI CCNGG 2 cut(s) 249, 326
SfcI CTRYAG 1 cut(s) 192
SmiMI CAYNNNNRTG 1 cut(s) 15
Sse9I AATT 3 cut(s) 95, 218, 413
SspI AATATT 1 cut(s) 349
SspMI CTAG 1 cut(s) 321
StyD4I CCNGG 2 cut(s) 247, 324
TaaI ACNGT 1 cut(s) 453
TaiI ACGT 2 cut(s) 19, 94
TasI AATT 3 cut(s) 95, 218, 413
TatI WGTACW 1 cut(s) 357
TseI GCWGC 2 cut(s) 191, 194
TspDTI ATGAA 3 cut(s) 101, 129, 290
XapI RAATTY 3 cut(s) 95, 218, 413
XceI RCATGY 1 cut(s) 215
XmnI GAANNNNTTC 2 cut(s) 99, 297
XspI CTAG 1 cut(s) 321
ZrmI AGTACT 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.