Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005299.1

Orthogroup ID

OG0010331

Physical Location & Seq

Genomic Coordinates Reverse (-)

13062 .. 17836

Gene Structure 4775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005299.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

atgatcagtcatctacgttcaacatccaagtattatactggttatccaaaggatctcgggccatcaagggttatccattttacatcagaacgtgaatttgttcagctcctacatgaaggttatcctgtggttgtggcattcaccatcaggtgtaatcttacaaaacatcttgacaaagtattagaggaagctgcagctgagttttatccacatgtgaaatttatgcgtgttgagtgtccaaaatatcctggtttctgtattacacggcagaagaaggaatatccatttatagaagtatttcatagtccagaacaaacatctagccagggaagggttgctgatccaaatattacaaagtactcggtgaaggttctacctttccataacgacacaagtgcctatggatttagagaattcttcaggcgtaatggaatacgatcatcaaatccacaacgtccgcgacgcgtcccagccttgatcactgatcgccggcccgtcggttcggttcttgcagatatgtctaggctaggctcagtgattacgtcacattctgttggttcacacggtgtgaagtgccaggtgtcaaaggagacagcagcgataatggaagcggtgcgggtaggtagcctaagcctccctcttaaaccgaggaggggcatagaaggaatgacagaaaagacagtaggacttatgtacaagaaaactagtactgcgaaagggacgtgccttagatttttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

246

Amino Acids

27.83

Weight (kDa)

9.87

Isoelectric Point (pI)

50.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57230 AT5G57230
fragaria_vesca	FvH4_4g07380
malus_domestica	MD13G1243200.v1.1 MD13G1243300.v1.1 MD16G1249800.v1.1
prunus_persica	Prupe.1G076700_v2.0.a1
pyrus_communis	pycom13g21470 pycom16g20960
rosa_chinensis	RchiOBHm_Chr4g0399821
rosa_laevigata	RLG00000009241
rosa_multiflora	Rmu_sc0005299.1_g000006
rosa_roxburghii	Rroxscaffold_5G00344700
rosa_rugosa	Rorug04G0018800 Rorug04G0018900 Rorug04G0019000
rosa_samantha	Rh4AG096500 Rh4BG093900 Rh4CG105600 Rh4DG090500
rosa_wichuraiana	Rw4G007970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	460, 465
AciI	CCGC	3 cut(s)	458, 611, 616
AclWI	GGATC	2 cut(s)	60, 335
AcsI	RAATTY	3 cut(s)	95, 218, 413
AcuI	CTGAAG	1 cut(s)	403
AdeI	CACNNNGTG	2 cut(s)	566, 568
AfaI	GTAC	3 cut(s)	359, 695, 709
AfiI	CCNNNNNNNGG	2 cut(s)	331, 653
AflIII	ACRYGT	2 cut(s)	211, 463
AgsI	TTSAA	1 cut(s)	21
AhlI	ACTAGT	1 cut(s)	704
AjiI	CACGTC	1 cut(s)	723
AjnI	CCWGG	3 cut(s)	247, 324, 576
AluBI	AGCT	3 cut(s)	106, 191, 197
AluI	AGCT	3 cut(s)	106, 191, 197
Alw26I	GTCTC	1 cut(s)	584
AlwI	GGATC	2 cut(s)	60, 335
Ama87I	CYCGRG	1 cut(s)	56
AoxI	GGCC	2 cut(s)	59, 491
ApeKI	GCWGC	3 cut(s)	191, 194, 596
ApoI	RAATTY	3 cut(s)	95, 218, 413
Asp700I	GAANNNNTTC	2 cut(s)	99, 297
AspS9I	GGNCC	2 cut(s)	59, 492
AsuHPI	GGTGA	2 cut(s)	133, 376
AvaI	CYCGRG	1 cut(s)	56
BbvI	GCAGC	3 cut(s)	178, 206, 608
BccI	CCATC	2 cut(s)	70, 152
BceAI	ACGGC	1 cut(s)	281
BcgI	CGANNNNNNTGC	2 cut(s)	377, 411
BciT130I	CCWGG	3 cut(s)	249, 326, 578
BclI	TGATCA	2 cut(s)	3, 477
BcoDI	GTCTC	1 cut(s)	584
BcuI	ACTAGT	1 cut(s)	704
BfaI	CTAG	4 cut(s)	321, 522, 527, 705
BfmI	CTRYAG	1 cut(s)	192
BisI	GCNGC	3 cut(s)	192, 195, 597
BlsI	GCNGC	3 cut(s)	193, 196, 598
BmcAI	AGTACT	2 cut(s)	359, 709
Bme1390I	CCNGG	3 cut(s)	249, 326, 578
BmeT110I	CYCGRG	1 cut(s)	56
BmgBI	CACGTC	1 cut(s)	723
BmgT120I	GGNCC	2 cut(s)	59, 492
BmrFI	CCNGG	3 cut(s)	249, 326, 578
Bpu10I	CCTNAGC	1 cut(s)	629
BsaJI	CCNNGG	2 cut(s)	325, 647
Bsc4I	CCNNNNNNNGG	2 cut(s)	331, 653
Bse118I	RCCGGY	1 cut(s)	489
Bse1I	ACTGG	1 cut(s)	43
BseBI	CCWGG	3 cut(s)	249, 326, 578
BseDI	CCNNGG	2 cut(s)	325, 647
BseGI	GGATG	1 cut(s)	23
BseLI	CCNNNNNNNGG	2 cut(s)	331, 653
BseMII	CTCAG	2 cut(s)	189, 546
BseNI	ACTGG	1 cut(s)	43
BseRI	GAGGAG	1 cut(s)	664
BseXI	GCAGC	3 cut(s)	178, 206, 608
BseYI	CCCAGC	1 cut(s)	469
Bsh1236I	CGCG	2 cut(s)	460, 465
BshFI	GGCC	2 cut(s)	61, 493
BsiHKCI	CYCGRG	1 cut(s)	56
BsiSI	CCGG	1 cut(s)	490
BslFI	GGGAC	2 cut(s)	452, 733
BslI	CCNNNNNNNGG	2 cut(s)	331, 653
BsmAI	GTCTC	1 cut(s)	584
BsmFI	GGGAC	2 cut(s)	452, 733
BsmI	GAATGC	1 cut(s)	137
BsnI	GGCC	2 cut(s)	61, 493
BsoBI	CYCGRG	1 cut(s)	56
Bsp1407I	TGTACA	1 cut(s)	693
Bsp143I	GATC	6 cut(s)	3, 52, 340, 437, 477, 484
BspACI	CCGC	3 cut(s)	458, 611, 616
BspANI	GGCC	2 cut(s)	61, 493
BspCNI	CTCAG	2 cut(s)	190, 545
BspFNI	CGCG	2 cut(s)	460, 465
BspMAI	CTGCAG	1 cut(s)	196
BspPI	GGATC	2 cut(s)	60, 335
BsrFI	RCCGGY	1 cut(s)	489
BsrGI	TGTACA	1 cut(s)	693
BsrI	ACTGG	1 cut(s)	43
BssAI	RCCGGY	1 cut(s)	489
BssECI	CCNNGG	2 cut(s)	325, 647
BssMI	GATC	6 cut(s)	3, 52, 340, 437, 477, 484
Bst2UI	CCWGG	3 cut(s)	249, 326, 578
Bst4CI	ACNGT	2 cut(s)	566, 682
BstAUI	TGTACA	1 cut(s)	693
BstC8I	GCNNGC	1 cut(s)	491
BstDEI	CTNAG	4 cut(s)	198, 532, 629, 728
BstF5I	GGATG	1 cut(s)	23
BstFNI	CGCG	2 cut(s)	460, 465
BstKTI	GATC	6 cut(s)	6, 55, 343, 440, 480, 487
BstMAI	GTCTC	1 cut(s)	584
BstMBI	GATC	6 cut(s)	3, 52, 340, 437, 477, 484
BstNI	CCWGG	3 cut(s)	249, 326, 578
BstNSI	RCATGY	1 cut(s)	215
BstSCI	CCNGG	3 cut(s)	247, 324, 576
BstSFI	CTRYAG	1 cut(s)	192
BstUI	CGCG	2 cut(s)	460, 465
BstV1I	GCAGC	3 cut(s)	178, 206, 608
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
BsuRI	GGCC	2 cut(s)	61, 493
BtrI	CACGTC	1 cut(s)	723
BtsCI	GGATG	1 cut(s)	23
BtsIMutI	CAGTG	2 cut(s)	480, 540
Cac8I	GCNNGC	1 cut(s)	491
Cfr10I	RCCGGY	1 cut(s)	489
Cfr13I	GGNCC	2 cut(s)	59, 492
CseI	GACGC	2 cut(s)	454, 471
Csp6I	GTAC	3 cut(s)	358, 694, 708
CviAII	CATG	2 cut(s)	113, 212
CviQI	GTAC	3 cut(s)	358, 694, 708
DdeI	CTNAG	4 cut(s)	198, 532, 629, 728
DpnI	GATC	6 cut(s)	5, 54, 342, 439, 479, 486
DpnII	GATC	6 cut(s)	3, 52, 340, 437, 477, 484
DraIII	CACNNNGTG	2 cut(s)	566, 568
Eco57I	CTGAAG	1 cut(s)	403
Eco88I	CYCGRG	1 cut(s)	56
EcoRI	GAATTC	1 cut(s)	413
EcoRII	CCWGG	3 cut(s)	247, 324, 576
FaeI	CATG	2 cut(s)	116, 215
FaqI	GGGAC	2 cut(s)	452, 733
FatI	CATG	2 cut(s)	112, 211
FauI	CCCGC	1 cut(s)	609
FbaI	TGATCA	2 cut(s)	3, 477
Fnu4HI	GCNGC	3 cut(s)	192, 195, 597
FokI	GGATG	1 cut(s)	10
Fsp4HI	GCNGC	3 cut(s)	192, 195, 597
FspBI	CTAG	4 cut(s)	321, 522, 527, 705
GluI	GCNGC	3 cut(s)	192, 195, 597
GsaI	CCCAGC	1 cut(s)	473
HaeIII	GGCC	2 cut(s)	61, 493
HapII	CCGG	1 cut(s)	490
HgaI	GACGC	2 cut(s)	454, 471
Hin1II	CATG	2 cut(s)	116, 215
HpaII	CCGG	1 cut(s)	490
HphI	GGTGA	2 cut(s)	133, 376
Hpy166II	GTNNAC	1 cut(s)	560
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	2 cut(s)	170, 308
Hpy8I	GTNNAC	1 cut(s)	560
Hpy99I	CGWCG	2 cut(s)	465, 500
HpyAV	CCTTC	5 cut(s)	110, 268, 324, 361, 656
HpyCH4III	ACNGT	2 cut(s)	566, 682
HpyCH4IV	ACGT	5 cut(s)	16, 91, 454, 542, 722
HpyCH4V	TGCA	2 cut(s)	194, 512
HpyF3I	CTNAG	4 cut(s)	198, 532, 629, 728
HpySE526I	ACGT	5 cut(s)	16, 91, 454, 542, 722
Hsp92II	CATG	2 cut(s)	116, 215
KroI	GCCGGC	1 cut(s)	489
KroNI	GCCGGC	1 cut(s)	491
Ksp22I	TGATCA	2 cut(s)	3, 477
Kzo9I	GATC	6 cut(s)	3, 52, 340, 437, 477, 484
LmnI	GCTCC	1 cut(s)	111
Lsp1109I	GCAGC	3 cut(s)	178, 206, 608
MaeI	CTAG	4 cut(s)	321, 522, 527, 705
MaeII	ACGT	5 cut(s)	16, 91, 454, 542, 722
MaeIII	GTNAC	1 cut(s)	543
MalI	GATC	6 cut(s)	5, 54, 342, 439, 479, 486
MboI	GATC	6 cut(s)	3, 52, 340, 437, 477, 484
MboII	GAAGA	2 cut(s)	283, 409
MflI	RGATCY	1 cut(s)	52
MluCI	AATT	3 cut(s)	95, 218, 413
MluI	ACGCGT	1 cut(s)	463
MnlI	CCTC	5 cut(s)	178, 642, 644, 645, 648
MroNI	GCCGGC	1 cut(s)	489
MroXI	GAANNNNTTC	2 cut(s)	99, 297
MseI	TTAA	1 cut(s)	642
MspA1I	CMGCKG	1 cut(s)	197
MspI	CCGG	1 cut(s)	490
MspR9I	CCNGG	3 cut(s)	249, 326, 578
Mva1269I	GAATGC	1 cut(s)	137
MvaI	CCWGG	3 cut(s)	249, 326, 578
MvnI	CGCG	2 cut(s)	460, 465
NaeI	GCCGGC	1 cut(s)	491
NdeII	GATC	6 cut(s)	3, 52, 340, 437, 477, 484
NgoMIV	GCCGGC	1 cut(s)	489
NlaIII	CATG	2 cut(s)	116, 215
NmuCI	GTSAC	1 cut(s)	543
NspI	RCATGY	1 cut(s)	215
PciI	ACATGT	1 cut(s)	211
PctI	GAATGC	1 cut(s)	137
PdiI	GCCGGC	1 cut(s)	491
PdmI	GAANNNNTTC	2 cut(s)	99, 297
PkrI	GCNGC	3 cut(s)	193, 196, 598
PscI	ACATGT	1 cut(s)	211
Psp6I	CCWGG	3 cut(s)	247, 324, 576
PspFI	CCCAGC	1 cut(s)	469
PspGI	CCWGG	3 cut(s)	247, 324, 576
PspPI	GGNCC	2 cut(s)	59, 492
PstI	CTGCAG	1 cut(s)	196
PsuI	RGATCY	1 cut(s)	52
PvuII	CAGCTG	1 cut(s)	197
RsaI	GTAC	3 cut(s)	359, 695, 709
RsaNI	GTAC	3 cut(s)	358, 694, 708
SaqAI	TTAA	1 cut(s)	642
SatI	GCNGC	3 cut(s)	192, 195, 597
Sau3AI	GATC	6 cut(s)	3, 52, 340, 437, 477, 484
Sau96I	GGNCC	2 cut(s)	59, 492
ScaI	AGTACT	2 cut(s)	359, 709
ScrFI	CCNGG	3 cut(s)	249, 326, 578
SfcI	CTRYAG	1 cut(s)	192
SpeI	ACTAGT	1 cut(s)	704
Sse9I	AATT	3 cut(s)	95, 218, 413
SsiI	CCGC	3 cut(s)	458, 611, 616
SspI	AATATT	1 cut(s)	349
SspMI	CTAG	4 cut(s)	321, 522, 527, 705
StyD4I	CCNGG	3 cut(s)	247, 324, 576
TaaI	ACNGT	2 cut(s)	566, 682
TaiI	ACGT	5 cut(s)	19, 94, 457, 545, 725
TasI	AATT	3 cut(s)	95, 218, 413
TatI	WGTACW	3 cut(s)	357, 693, 707
Tru1I	TTAA	1 cut(s)	642
Tru9I	TTAA	1 cut(s)	642
TscAI	CASTG	2 cut(s)	487, 540
TseFI	GTSAC	1 cut(s)	543
TseI	GCWGC	3 cut(s)	191, 194, 596
Tsp45I	GTSAC	1 cut(s)	543
TspDTI	ATGAA	2 cut(s)	129, 290
TspRI	CASTG	2 cut(s)	487, 540
XapI	RAATTY	3 cut(s)	95, 218, 413
XceI	RCATGY	1 cut(s)	215
XmnI	GAANNNNTTC	2 cut(s)	99, 297
XspI	CTAG	4 cut(s)	321, 522, 527, 705
ZrmI	AGTACT	2 cut(s)	359, 709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.