Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0001998

Physical Location & Seq

Genomic Coordinates Forward (+)

25470748 .. 25474979

Gene Structure 4232 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1244100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2430 bp

ATGCCTGTTAGGAAAATGATAGGGTCCATTTTGCCCTTACCGGCTCCTCCTTCTGATGGAGACCTTGGGCCTCTTCCGGAATCCCAAGTGACTGAACTTAGTCAGGATGAGAACCAATTGAACGAGGAGCTGAGCAAAGCCAACTCTACTTCAGTTGCAACGCATACCAGGGCTATTGGTATCATACATCCTCCTCCAGACATTAGAAACATTGTTGACAAAACTGCCCAATTTGTGGCAAAGAATGGACCAGAGTTTGAGAAAAGGATTATGGCTAATAATACCGGAAATGCAAAGTTCAGTTTCTTGATTTCGACAGATCCCTACCATGCATATTATCAGCATCGGTTGTCTGAATTCCGTGCCCTGAATCAGTCTTCTGGACAGCAACCATCTACACAGCCTGCAGATTCTGCTTCACCTGAGTCTGCCCCACCAGCTCCAGCTGCAGATGGTGAAGCAGGAGCCCCAAAGCCTGATCCCTCTGCCCAGTTTAGACCTGTTCGCAAAGTGCTCGAACCACCACAAGCTGAGGAGTATACTGTTCGTCTTCCTGAAGGTATTACCGGGGAAGAGTTGGATATTATTAAGCTCACAGCGCAGTTTGCAGCTCGAAATGGGAAAACATTTTTGCAAGGATTGACAAGCAGGGAAATGAATAACCACCAGTTCCATTTTCTGAAGCCTATGCATAGCATGTTCACATTTTTCACTTCTCTGGCTGATGCATATTCTAAGGTGTTGATGCCTCCGGAGAATTTGCAAGATAAGCTTAAGAAAAGTGTTGCAGACATGACAACTGTGCTCGAAAGGTGTGTCCATCGACTGGAGTGGGAGCGTTCACAAGAGCAGGCAAGACAGAAGGCTGAAGATGAGATTGAGCAGGAAAGAATACAAATGGCTATGATTGATTGGCATGACTTTGTTGTGGTTGAAACAATAGACTTTGCAGATGATGAGGATGAGGATTTACCTCCTCCGATGACCCTTGAGGAGGTTATTAGGAGAAGCAAGGTCGCTGATATGGAAGAGGACATTGTTGAGCCTGGTAAGGAGGTGGAAATGGAAATGGATGAAGAAGAGATGCAGCTTGTTGAAGAGGGCTTGAGGACAGCCAGACTTGAAGAGAATGATGATGAAAAGAGGAACGAGAATATGGTGACAGAGGATCCAGAACCACCAATGAGAATTGTGAAGAACTGGAAGAGACCTGAGGACAGGATCCCTGCCGAAAGAGACCCAACAAAGTATGTCATTTCCCCAATCACTGGAGAGCTCATACCTATCAATGAGATGTCTGAACACATGAGGATTTCTCTCATTGATCCAAAATACAAAGAGCAAAAGGAAAGGATGTTTGCTAAGATTCGGGAGACTACTCTTGCTCAAGATGATGAAATCTCAAGAAACATTGTGGGCCTTGCACGAACCCGTCCTGATATTTTTGGTACCACAGAGGAAGAAGTGTCTAATGCTGTCAAGGCTGAGATTGAGAAAAAGAAAGATGAGCAACCAAAGCAGGTCATCTGGGATGGTCACACTGGAAGTATTGGCCGCACAGCAAATCAAGCAATGTCGCAGAATATCAATGGAGAGGACCAAAATGATGGTCTTAACAATGATGCTAGGAACCTTCCTGGTCCTGCAGCTCCTCCTCCAAAACCTGGTGTGCCTTCAATTCGTCCTCTTCCTCCACCACCTGGTCTTGCCTTGAATCTACCTCGTCCTCCAAACACAGTCCAGTATTCTGCTCCAACTAGCGGCGGTCTCCCTGCACCTCCACCAAGGCCCCCGGTTGTCCAATATCAATCAATTCGACCACCTGGACCCCCAATGCCCATGAGTTCTGGACAGCAGTCCCTTATGCTCAACCGACCACCTCCTATGCACCCATCCATGTCTATGAATGCACCTGCTATTTCTGTACCACCTCCACCTGGTTCTCAGTTTACACCAATGCAAGTTCCCCGACCTTATATGCCTCTTCCTGTTCCTCCACCTACAATGCAAATGATGCCACCCCCACCTTTGCCTCAAGGAATGCCACCACCACCACCTGAAGAAGCTCCTCCACCGCTTCCAGAAGAACCTGAGCCAAAGCGGCAGAAGCTTGATGATTCTATGCTTATTCCAGAAGATCAGTTTCTGGCACAGCATCCGGGACCTGTTCGCATCACAGTATCTGTGCCCAATGTTGATGAAGGTAATCTAAAGGGACAACTTTTGGAGATCTTGGTGCAGTCTTTATCAGAAACTGTTGGTAGTTTGAAAGAGAAAATTTCTGGGGAGATCCAGCTTCCAGCAAACAAACAGAAGTTGAGTGGAAAACCTGGTTTTCTCAAGGACAACATGTCACTTGCATATTACAATGTTGGAGCAGCTGAAACACTTACTCTTTCATTAAGGGAGCGTGGTGGAAGAAAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031323 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP21_like_P Surp ubiquitin

Protein Analysis

810

Amino Acids

89.9

Weight (kDa)

5.0

Isoelectric Point (pI)

64.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Surp	PF01805	69 - 120	1.7e-22	Surp module
Surp	PF01805	193 - 244	3.2e-15	Surp module
PRP21_like_P	PF12230	263 - 476	1.6e-55	Pre-mRNA splicing factor PRP21 like protein
ubiquitin	PF00240	748 - 804	7e-07	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14650 AT1G14650 AT1G14650
fragaria_vesca	FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440
malus_domestica	MD13G1244100.v1.1 MD16G1250800.v1.1
prunus_persica	Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1
pyrus_communis	pycom13g21530 pycom16g21040
rosa_chinensis	RchiOBHm_Chr4g0399901
rosa_laevigata	RLG00000009234
rosa_multiflora	Rmu_co8505131.1_g000001 Rmu_sc0014676.1_g000002
rosa_roxburghii	Rroxscaffold_5G00344760
rosa_rugosa	Rorug04G0020000 Rorug04G0020100 Rorug04G0020200 Rorug04G0020200
rosa_samantha	Rh4AG097000 Rh4BG094600 Rh4CG106100
rosa_wichuraiana	Rw4G008020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1921
Acc36I	ACCTGC	2 cut(s)	1510, 1921
Acc65I	GGTACC	1 cut(s)	1448
AccB1I	GGYRCC	1 cut(s)	1448
AccB7I	CCANNNNNTGG	5 cut(s)	235, 826, 1268, 1664, 1700
AccI	GTMKAC	1 cut(s)	539
AccIII	TCCGGA	2 cut(s)	76, 751
AciI	CCGC	5 cut(s)	1555, 1761, 1764, 2075, 2101
AclWI	GGATC	8 cut(s)	314, 473, 1163, 1176, 1216, 1229, 1319, 2284
AcoI	YGGCCR	1 cut(s)	1552
AcsI	RAATTY	3 cut(s)	356, 757, 2277
AcuI	CTGAAG	5 cut(s)	135, 576, 701, 888, 2079
AfaI	GTAC	2 cut(s)	1450, 1926
AfiI	CCNNNNNNNGG	9 cut(s)	56, 235, 826, 994, 1268, 1664, 1700, 1760, 1937
AflII	CTTAAG	1 cut(s)	773
AflIII	ACRYGT	1 cut(s)	2349
AgsI	TTSAA	7 cut(s)	121, 935, 1097, 1124, 1677, 1714, 2269
AhdI	GACNNNNNGTC	1 cut(s)	2350
AjnI	CCWGG	8 cut(s)	167, 1045, 1636, 1663, 1699, 1822, 1936, 2329
Alw21I	GWGCWC	3 cut(s)	516, 807, 1278
Alw26I	GTCTC	5 cut(s)	54, 1201, 1230, 1367, 1772
AlwI	GGATC	8 cut(s)	314, 473, 1163, 1176, 1216, 1229, 1319, 2284
AlwNI	CAGNNNCTG	4 cut(s)	413, 2146, 2183, 2255
Aor13HI	TCCGGA	2 cut(s)	76, 751
AoxI	GGCC	4 cut(s)	68, 1417, 1552, 1787
ApeKI	GCWGC	5 cut(s)	446, 608, 1087, 1646, 2378
ApoI	RAATTY	3 cut(s)	356, 757, 2277
ArsI	GACNNNNNNTTYG	4 cut(s)	801, 833, 1594, 1626
Asp718I	GGTACC	1 cut(s)	1448
AspLEI	GCGC	1 cut(s)	601
AspS9I	GGNCC	9 cut(s)	24, 68, 248, 1417, 1597, 1640, 1788, 1826, 2162
AsuC2I	CCSGG	3 cut(s)	568, 1793, 2160
AsuHPI	GGTGA	3 cut(s)	411, 467, 1171
AvaII	GGWCC	6 cut(s)	24, 248, 1597, 1640, 1826, 2162
AxyI	CCTNAGG	1 cut(s)	1212
BaeGI	GKGCMC	2 cut(s)	367, 2190
BamHI	GGATCC	2 cut(s)	1168, 1221
BanI	GGYRCC	1 cut(s)	1448
BanII	GRGCYC	2 cut(s)	469, 1278
BbsI	GAAGAC	2 cut(s)	369, 542
Bbv12I	GWGCWC	3 cut(s)	516, 807, 1278
BbvCI	CCTCAGC	1 cut(s)	531
BbvI	GCAGC	5 cut(s)	433, 620, 1099, 1658, 2390
BccI	CCATC	7 cut(s)	50, 400, 446, 828, 1526, 1601, 1900
BcgI	CGANNNNNNTGC	2 cut(s)	496, 530
BciT130I	CCWGG	8 cut(s)	169, 1047, 1638, 1665, 1701, 1824, 1938, 2331
BcnI	CCSGG	3 cut(s)	568, 1793, 2160
BcoDI	GTCTC	5 cut(s)	54, 1201, 1230, 1367, 1772
BfaI	CTAG	2 cut(s)	1626, 1758
BfmI	CTRYAG	3 cut(s)	405, 447, 1644
BfrI	CTTAAG	1 cut(s)	773
BfuAI	ACCTGC	2 cut(s)	1510, 1921
BglI	GCCNNNNNGGC	1 cut(s)	2101
BglII	AGATCT	1 cut(s)	2229
BisI	GCNGC	8 cut(s)	447, 609, 1088, 1555, 1647, 1762, 2102, 2379
BlpI	GCTNAGC	1 cut(s)	131
BlsI	GCNGC	8 cut(s)	448, 610, 1089, 1556, 1648, 1763, 2103, 2380
Bme18I	GGWCC	6 cut(s)	24, 248, 1597, 1640, 1826, 2162
BmeRI	GACNNNNNGTC	1 cut(s)	2350
BmgT120I	GGNCC	9 cut(s)	24, 68, 248, 1417, 1597, 1640, 1788, 1826, 2162
BmrI	ACTGGG	1 cut(s)	484
BmsI	GCATC	8 cut(s)	352, 715, 735, 1074, 1612, 2004, 2164, 2181
BmuI	ACTGGG	1 cut(s)	484
BoxI	GACNNNNGTC	1 cut(s)	1855
BpiI	GAAGAC	2 cut(s)	369, 542
BplI	GAGNNNNNCTC	2 cut(s)	1300, 1332
BpmI	CTGGAG	4 cut(s)	180, 426, 848, 1290
Bpu10I	CCTNAGC	2 cut(s)	531, 2091
Bpu1102I	GCTNAGC	1 cut(s)	131
BpuEI	CTTGAG	6 cut(s)	1010, 1126, 1371, 1387, 2019, 2324
BpuMI	CCSGG	3 cut(s)	568, 1793, 2160
BsaI	GGTCTC	4 cut(s)	54, 1201, 1230, 1772
BsaJI	CCNNGG	5 cut(s)	64, 168, 567, 1784, 1791
BsaWI	WCCGGW	3 cut(s)	76, 284, 751
Bsc4I	CCNNNNNNNGG	9 cut(s)	56, 235, 826, 994, 1268, 1664, 1700, 1760, 1937
Bse118I	RCCGGY	1 cut(s)	40
Bse1I	ACTGG	7 cut(s)	490, 667, 831, 1205, 1273, 1546, 1741
Bse21I	CCTNAGG	1 cut(s)	1212
Bse3DI	GCAATG	1 cut(s)	1578
BseAI	TCCGGA	2 cut(s)	76, 751
BseBI	CCWGG	8 cut(s)	169, 1047, 1638, 1665, 1701, 1824, 1938, 2331
BseDI	CCNNGG	5 cut(s)	64, 168, 567, 1784, 1791
BseGI	GGATG	8 cut(s)	112, 187, 967, 1078, 1359, 1537, 1892, 2155
BseLI	CCNNNNNNNGG	9 cut(s)	56, 235, 826, 994, 1268, 1664, 1700, 1760, 1937
BseMI	GCAATG	1 cut(s)	1578
BseMII	CTCAG	7 cut(s)	122, 414, 522, 1203, 1476, 1958, 2082
BseNI	ACTGG	7 cut(s)	490, 667, 831, 1205, 1273, 1546, 1741
BseRI	GAGGAG	9 cut(s)	36, 140, 183, 548, 966, 1007, 1641, 1644, 2058
BseSI	GKGCMC	2 cut(s)	367, 2190
BseXI	GCAGC	5 cut(s)	433, 620, 1099, 1658, 2390
BsgI	GTGCAG	2 cut(s)	1758, 2258
BshFI	GGCC	4 cut(s)	70, 1419, 1554, 1789
BshNI	GGYRCC	1 cut(s)	1448
BsiHKAI	GWGCWC	3 cut(s)	516, 807, 1278
BsiSI	CCGG	7 cut(s)	41, 77, 285, 567, 752, 1793, 2159
BslFI	GGGAC	3 cut(s)	1843, 2175, 2229
BslI	CCNNNNNNNGG	9 cut(s)	56, 235, 826, 994, 1268, 1664, 1700, 1760, 1937
BsmAI	GTCTC	5 cut(s)	54, 1201, 1230, 1367, 1772
BsmFI	GGGAC	3 cut(s)	1843, 2175, 2229
BsmI	GAATGC	2 cut(s)	1912, 2046
BsnI	GGCC	4 cut(s)	70, 1419, 1554, 1789
Bso31I	GGTCTC	4 cut(s)	54, 1201, 1230, 1772
Bsp1286I	GDGCHC	6 cut(s)	367, 469, 516, 807, 1278, 2190
Bsp13I	TCCGGA	2 cut(s)	76, 751
Bsp143I	GATC	8 cut(s)	319, 478, 1168, 1221, 1324, 2137, 2229, 2289
Bsp1720I	GCTNAGC	1 cut(s)	131
BspACI	CCGC	5 cut(s)	1555, 1761, 1764, 2075, 2101
BspANI	GGCC	4 cut(s)	70, 1419, 1554, 1789
BspCNI	CTCAG	7 cut(s)	123, 415, 523, 1204, 1477, 1957, 2083
BspEI	TCCGGA	2 cut(s)	76, 751
BspMAI	CTGCAG	3 cut(s)	409, 451, 1648
BspMI	ACCTGC	2 cut(s)	1510, 1921
BspPI	GGATC	8 cut(s)	314, 473, 1163, 1176, 1216, 1229, 1319, 2284
BspT107I	GGYRCC	1 cut(s)	1448
BspTI	CTTAAG	1 cut(s)	773
BspTNI	GGTCTC	4 cut(s)	54, 1201, 1230, 1772
BsrDI	GCAATG	1 cut(s)	1578
BsrFI	RCCGGY	1 cut(s)	40
BsrI	ACTGG	7 cut(s)	490, 667, 831, 1205, 1273, 1546, 1741
BssAI	RCCGGY	1 cut(s)	40
BssECI	CCNNGG	5 cut(s)	64, 168, 567, 1784, 1791
BssMI	GATC	8 cut(s)	319, 478, 1168, 1221, 1324, 2137, 2229, 2289
BssNAI	GTATAC	1 cut(s)	540
BssT1I	CCWWGG	2 cut(s)	64, 1784
Bst1107I	GTATAC	1 cut(s)	540
Bst2UI	CCWGG	8 cut(s)	169, 1047, 1638, 1665, 1701, 1824, 1938, 2331
Bst4CI	ACNGT	5 cut(s)	544, 802, 1738, 2179, 2257
Bst6I	CTCTTC	9 cut(s)	78, 567, 1023, 1074, 1092, 1119, 1199, 1692, 1989
BstAFI	CTTAAG	1 cut(s)	773
BstAPI	GCANNNNNTGC	2 cut(s)	413, 2014
BstC8I	GCNNGC	2 cut(s)	405, 852
BstENI	CCTNNNNNAGG	1 cut(s)	992
BstF5I	GGATG	8 cut(s)	112, 187, 967, 1078, 1359, 1537, 1892, 2155
BstHHI	GCGC	1 cut(s)	601
BstKTI	GATC	8 cut(s)	322, 481, 1171, 1224, 1327, 2140, 2232, 2292
BstMAI	GTCTC	5 cut(s)	54, 1201, 1230, 1367, 1772
BstMBI	GATC	8 cut(s)	319, 478, 1168, 1221, 1324, 2137, 2229, 2289
BstNI	CCWGG	8 cut(s)	169, 1047, 1638, 1665, 1701, 1824, 1938, 2331
BstNSI	RCATGY	2 cut(s)	700, 2353
BstPAI	GACNNNNGTC	1 cut(s)	1855
BstSFI	CTRYAG	3 cut(s)	405, 447, 1644
BstSLI	GKGCMC	2 cut(s)	367, 2190
BstV1I	GCAGC	5 cut(s)	433, 620, 1099, 1658, 2390
BstV2I	GAAGAC	2 cut(s)	369, 542
BstX2I	RGATCY	5 cut(s)	319, 1168, 1221, 2229, 2289
BstXI	CCANNNNNNTGG	1 cut(s)	1607
BstYI	RGATCY	5 cut(s)	319, 1168, 1221, 2229, 2289
BstZ17I	GTATAC	1 cut(s)	540
Bsu36I	CCTNAGG	1 cut(s)	1212
BsuRI	GGCC	4 cut(s)	70, 1419, 1554, 1789
BtsCI	GGATG	8 cut(s)	112, 187, 967, 1078, 1359, 1537, 1892, 2155
BtsIMutI	CAGTG	2 cut(s)	1266, 1539
BveI	ACCTGC	2 cut(s)	1510, 1921
Cac8I	GCNNGC	2 cut(s)	405, 852
CaiI	CAGNNNCTG	4 cut(s)	413, 2146, 2183, 2255
CfoI	GCGC	1 cut(s)	601
Cfr10I	RCCGGY	1 cut(s)	40
Cfr13I	GGNCC	9 cut(s)	24, 68, 248, 1417, 1597, 1640, 1788, 1826, 2162
CsiI	ACCWGGT	4 cut(s)	1663, 1699, 1936, 2329
Csp6I	GTAC	2 cut(s)	1449, 1925
CviAII	CATG	8 cut(s)	329, 697, 793, 917, 1306, 1840, 1897, 2350
CviQI	GTAC	2 cut(s)	1449, 1925
DpnI	GATC	8 cut(s)	321, 480, 1170, 1223, 1326, 2139, 2231, 2291
DpnII	GATC	8 cut(s)	319, 478, 1168, 1221, 1324, 2137, 2229, 2289
DriI	GACNNNNNGTC	1 cut(s)	2350
EaeI	YGGCCR	1 cut(s)	1552
Eam1104I	CTCTTC	9 cut(s)	78, 567, 1023, 1074, 1092, 1119, 1199, 1692, 1989
Eam1105I	GACNNNNNGTC	1 cut(s)	2350
EarI	CTCTTC	9 cut(s)	78, 567, 1023, 1074, 1092, 1119, 1199, 1692, 1989
Ecl136II	GAGCTC	1 cut(s)	1276
Eco130I	CCWWGG	2 cut(s)	64, 1784
Eco24I	GRGCYC	2 cut(s)	469, 1278
Eco31I	GGTCTC	4 cut(s)	54, 1201, 1230, 1772
Eco47I	GGWCC	6 cut(s)	24, 248, 1597, 1640, 1826, 2162
Eco53kI	GAGCTC	1 cut(s)	1276
Eco57I	CTGAAG	5 cut(s)	135, 576, 701, 888, 2079
Eco81I	CCTNAGG	1 cut(s)	1212
EcoICRI	GAGCTC	1 cut(s)	1276
EcoNI	CCTNNNNNAGG	1 cut(s)	992
EcoO109I	RGGNCCY	2 cut(s)	1788, 2162
EcoRI	GAATTC	1 cut(s)	356
EcoRII	CCWGG	8 cut(s)	167, 1045, 1636, 1663, 1699, 1822, 1936, 2329
EcoT14I	CCWWGG	2 cut(s)	64, 1784
EcoT22I	ATGCAT	3 cut(s)	334, 693, 730
EcoT38I	GRGCYC	2 cut(s)	469, 1278
ErhI	CCWWGG	2 cut(s)	64, 1784
FaeI	CATG	8 cut(s)	332, 700, 796, 920, 1309, 1843, 1900, 2353
FalI	AAGNNNNNCTT	2 cut(s)	756, 788
FaqI	GGGAC	3 cut(s)	1843, 2175, 2229
FatI	CATG	8 cut(s)	328, 696, 792, 916, 1305, 1839, 1896, 2349
FblI	GTMKAC	1 cut(s)	539
Fnu4HI	GCNGC	8 cut(s)	447, 609, 1088, 1555, 1647, 1762, 2102, 2379
FokI	GGATG	8 cut(s)	119, 174, 974, 1085, 1366, 1544, 1879, 2142
FriOI	GRGCYC	2 cut(s)	469, 1278
Fsp4HI	GCNGC	8 cut(s)	447, 609, 1088, 1555, 1647, 1762, 2102, 2379
FspBI	CTAG	2 cut(s)	1626, 1758
GlaI	GCGC	1 cut(s)	600
GluI	GCNGC	8 cut(s)	447, 609, 1088, 1555, 1647, 1762, 2102, 2379
GsuI	CTGGAG	4 cut(s)	180, 426, 848, 1290
HaeIII	GGCC	4 cut(s)	70, 1419, 1554, 1789
HapII	CCGG	7 cut(s)	41, 77, 285, 567, 752, 1793, 2159
HhaI	GCGC	1 cut(s)	601
Hin1II	CATG	8 cut(s)	332, 700, 796, 920, 1309, 1843, 1900, 2353
Hin6I	GCGC	1 cut(s)	599
HinP1I	GCGC	1 cut(s)	599
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HindIII	AAGCTT	2 cut(s)	770, 2108
HinfI	GANTC	7 cut(s)	80, 370, 410, 425, 1366, 1714, 2117
HpaII	CCGG	7 cut(s)	41, 77, 285, 567, 752, 1793, 2159
HphI	GGTGA	3 cut(s)	411, 467, 1171
Hpy166II	GTNNAC	5 cut(s)	217, 540, 702, 842, 1950
Hpy188I	TCNGA	6 cut(s)	55, 355, 681, 981, 1300, 2251
Hpy8I	GTNNAC	5 cut(s)	217, 540, 702, 842, 1950
HpyAV	CCTTC	6 cut(s)	60, 551, 856, 1643, 1683, 2195
HpyCH4III	ACNGT	5 cut(s)	544, 802, 1738, 2179, 2257
Hsp92II	CATG	8 cut(s)	332, 700, 796, 920, 1309, 1843, 1900, 2353
HspAI	GCGC	1 cut(s)	599
Kpn2I	TCCGGA	2 cut(s)	76, 751
KpnI	GGTACC	1 cut(s)	1452
Kzo9I	GATC	8 cut(s)	319, 478, 1168, 1221, 1324, 2137, 2229, 2289
Lsp1109I	GCAGC	5 cut(s)	433, 620, 1099, 1658, 2390
LweI	GCATC	8 cut(s)	352, 715, 735, 1074, 1612, 2004, 2164, 2181
MabI	ACCWGGT	4 cut(s)	1663, 1699, 1936, 2329
MaeI	CTAG	2 cut(s)	1626, 1758
MaeIII	GTNAC	4 cut(s)	88, 1159, 1535, 2352
MalI	GATC	8 cut(s)	321, 480, 1170, 1223, 1326, 2139, 2231, 2291
MboI	GATC	8 cut(s)	319, 478, 1168, 1221, 1324, 2137, 2229, 2289
MfeI	CAATTG	1 cut(s)	116
MflI	RGATCY	5 cut(s)	319, 1168, 1221, 2229, 2289
MhlI	GDGCHC	6 cut(s)	367, 469, 516, 807, 1278, 2190
MluCI	AATT	8 cut(s)	116, 230, 356, 757, 1188, 1677, 1812, 2277
MlyI	GAGTC	1 cut(s)	434
MmeI	TCCRAC	3 cut(s)	558, 1778, 2353
Mph1103I	ATGCAT	3 cut(s)	334, 693, 730
MroI	TCCGGA	2 cut(s)	76, 751
MseI	TTAA	4 cut(s)	588, 774, 1614, 2402
MslI	CAYNNNNRTG	1 cut(s)	1901
MspA1I	CMGCKG	2 cut(s)	446, 2381
MspCI	CTTAAG	1 cut(s)	773
MspI	CCGG	7 cut(s)	41, 77, 285, 567, 752, 1793, 2159
MunI	CAATTG	1 cut(s)	116
Mva1269I	GAATGC	2 cut(s)	1912, 2046
MvaI	CCWGG	8 cut(s)	169, 1047, 1638, 1665, 1701, 1824, 1938, 2331
NciI	CCSGG	3 cut(s)	568, 1793, 2160
NdeII	GATC	8 cut(s)	319, 478, 1168, 1221, 1324, 2137, 2229, 2289
NlaIII	CATG	8 cut(s)	332, 700, 796, 920, 1309, 1843, 1900, 2353
NmuCI	GTSAC	4 cut(s)	88, 1159, 1535, 2352
NsiI	ATGCAT	3 cut(s)	334, 693, 730
NspI	RCATGY	2 cut(s)	700, 2353
PaqCI	CACCTGC	1 cut(s)	1921
PciI	ACATGT	1 cut(s)	2349
PctI	GAATGC	2 cut(s)	1912, 2046
PfeI	GAWTC	6 cut(s)	80, 370, 410, 1366, 1714, 2117
PflMI	CCANNNNNTGG	5 cut(s)	235, 826, 1268, 1664, 1700
PfoI	TCCNGGA	1 cut(s)	2158
PkrI	GCNGC	8 cut(s)	448, 610, 1089, 1556, 1648, 1763, 2103, 2380
PleI	GAGTC	1 cut(s)	433
PpsI	GAGTC	1 cut(s)	433
PpuMI	RGGWCCY	1 cut(s)	2162
PscI	ACATGT	1 cut(s)	2349
PshAI	GACNNNNGTC	1 cut(s)	1855
Psp124BI	GAGCTC	1 cut(s)	1278
Psp5II	RGGWCCY	1 cut(s)	2162
Psp6I	CCWGG	8 cut(s)	167, 1045, 1636, 1663, 1699, 1822, 1936, 2329
PspGI	CCWGG	8 cut(s)	167, 1045, 1636, 1663, 1699, 1822, 1936, 2329
PspPI	GGNCC	9 cut(s)	24, 68, 248, 1417, 1597, 1640, 1788, 1826, 2162
PspPPI	RGGWCCY	1 cut(s)	2162
PstI	CTGCAG	3 cut(s)	409, 451, 1648
PstNI	CAGNNNCTG	4 cut(s)	413, 2146, 2183, 2255
PsuI	RGATCY	5 cut(s)	319, 1168, 1221, 2229, 2289
PvuII	CAGCTG	2 cut(s)	446, 2381
RsaI	GTAC	2 cut(s)	1450, 1926
RsaNI	GTAC	2 cut(s)	1449, 1925
RseI	CAYNNNNRTG	1 cut(s)	1901
SacI	GAGCTC	1 cut(s)	1278
SaqAI	TTAA	4 cut(s)	588, 774, 1614, 2402
SatI	GCNGC	8 cut(s)	447, 609, 1088, 1555, 1647, 1762, 2102, 2379
Sau3AI	GATC	8 cut(s)	319, 478, 1168, 1221, 1324, 2137, 2229, 2289
Sau96I	GGNCC	9 cut(s)	24, 68, 248, 1417, 1597, 1640, 1788, 1826, 2162
SchI	GAGTC	1 cut(s)	434
SduI	GDGCHC	6 cut(s)	367, 469, 516, 807, 1278, 2190
SexAI	ACCWGGT	4 cut(s)	1663, 1699, 1936, 2329
SfaNI	GCATC	8 cut(s)	352, 715, 735, 1074, 1612, 2004, 2164, 2181
SfcI	CTRYAG	3 cut(s)	405, 447, 1644
SinI	GGWCC	6 cut(s)	24, 248, 1597, 1640, 1826, 2162
SmiMI	CAYNNNNRTG	1 cut(s)	1901
SmlI	CTYRAG	7 cut(s)	773, 989, 1105, 1386, 1402, 2034, 2339
SmoI	CTYRAG	7 cut(s)	773, 989, 1105, 1386, 1402, 2034, 2339
Sse9I	AATT	8 cut(s)	116, 230, 356, 757, 1188, 1677, 1812, 2277
SsiI	CCGC	5 cut(s)	1555, 1761, 1764, 2075, 2101
SspMI	CTAG	2 cut(s)	1626, 1758
SstI	GAGCTC	1 cut(s)	1278
StyI	CCWWGG	2 cut(s)	64, 1784
TaaI	ACNGT	5 cut(s)	544, 802, 1738, 2179, 2257
TaqI	TCGA	6 cut(s)	314, 516, 613, 807, 823, 1816
TasI	AATT	8 cut(s)	116, 230, 356, 757, 1188, 1677, 1812, 2277
TauI	GCSGC	3 cut(s)	1557, 1764, 2104
TfiI	GAWTC	6 cut(s)	80, 370, 410, 1366, 1714, 2117
Tru1I	TTAA	4 cut(s)	588, 774, 1614, 2402
Tru9I	TTAA	4 cut(s)	588, 774, 1614, 2402
TscAI	CASTG	2 cut(s)	1273, 1546
TseFI	GTSAC	4 cut(s)	88, 1159, 1535, 2352
TseI	GCWGC	5 cut(s)	446, 608, 1087, 1646, 2378
Tsp45I	GTSAC	4 cut(s)	88, 1159, 1535, 2352
TspDTI	ATGAA	7 cut(s)	671, 1089, 1152, 1410, 1919, 2214, 2388
TspGWI	ACGGA	1 cut(s)	350
TspRI	CASTG	2 cut(s)	1273, 1546
Van91I	CCANNNNNTGG	5 cut(s)	235, 826, 1268, 1664, 1700
Vha464I	CTTAAG	1 cut(s)	773
VpaK11BI	GGWCC	6 cut(s)	24, 248, 1597, 1640, 1826, 2162
XagI	CCTNNNNNAGG	1 cut(s)	992
XapI	RAATTY	3 cut(s)	356, 757, 2277
XceI	RCATGY	2 cut(s)	700, 2353
XmiI	GTMKAC	1 cut(s)	539
XspI	CTAG	2 cut(s)	1626, 1758
Zsp2I	ATGCAT	3 cut(s)	334, 693, 730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.