Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001998

Physical Location & Seq

Genomic Coordinates Forward (+)

14890704 .. 14896193

Gene Structure 5490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00344760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2412 bp

ATGATCGGTTCCATATTACCCTTGCCAGCTCCTCCTACTGATGGAAACCTGGGGCCTTTACTGCTAGCCCAGGTCACTGAAGTGAAGAATGAAGAGAATGAATTGAACGAGGAGCTGAACAGAGCCAACTCGGTGCCTGTCTCAGTTGCTACGCATACTAGGACGATTGGTATCATACATCCTCCTCCCGATATCAGAAACATTGTTGACAAAACTTCCCAGTTTGTCGCAAAGAATGGACCAGAATTTGAGAAGAGGATTATAGCCAGTAATAGTGGAAATCCAAAGTTTAAGTTTTTGAGTTCCTCGGATCCGTACCATGCCTATTATCAGCACCGGTTGTCTGAATTTCGTGCCCAGGCTCAGTCTTCTGGCCAGCAACCTTCTTTGGAGCCTGACGATTCTGCTGCACCTGAATCAGGCCTGCCAGCTCCAGCTGCTGATGGTGAAGCAGAAACAACTAAGCCTGATCCCTCTGCCCAGTTTAGACTGGTACGAAAAGTTCTTGAACCACCAGAAGCCGAGCAGTATACTGTTAGGCTTCCAGAAGGGATTACTGGAGAAGAATTGGATATTATTAAGCTCACAGCCCAGTTTGTTGCTCGAAATGGGAAATCATTTTTGACAGGATTGACAAGCAGAGAGATCAATAACCCCCAGTTCCATTTTCTGAAGCCTACCCATAGTATGTTCATGTTTTTCACCTCTCTGGCCGATGCATATTCGAAGGTCTTGATGCCTCCAAAAGGTTTGACAGAGAAGCTTAAGAAAAGTGTTGCAGACATGACAACTGTGCTTGAACGCTGTGTGCATCGGCTGGAGTGGGAGCGATCTCAAGAGCAGGCAAGGCAGAAGGCTGAAGATGAGATAGAGCAGGAAAGGATACAAATGGCTATGATTGATTGGCATGATTTTGTTGTGGTTGAAACCATAGACTTTGCTGATGATGAGGATGAGGATTTACCTCCTCCAATGACCCTTGAGGAGGTTATAAGAAGAAGCAAGGTTACAGATATGGAAGAAGATGTTATTGAGTCTGGAAAGGAGATGGAAATGGAAATGGATGAAGAAGAAATGCAGCTTGTTGAAGAGGGCATGAGGCAAGCAAGACTTGAAGAGAACAATGAACAGAAGAATGAGAATAAGGTAACAGATGATCCCGAACCCCCAATGAGAATTGTGAAGAACTGGAAGAGACCTGAGGAGAGGATTCCTGCAGAAAGAGATCCAACAAAGGTTGTCATTTCCCCGATTACTGGGGAGCTTATCCCTATCAATGAGATGTCTGAACATATGAGAATTTCTCTCATTGATCCAAAATACAAAGAGCAAAAAGAAAGGATGTTTGCGAAGATTAGGGAGACCACTCTTGCTCAGGATGATGAAATCTCAAGGAACATTGTGGGCCTTGCACGAACCCGTCCGGATATTTTTGGTACTACAGAGGAAGAAGTTTCTAATGCTGTCAAGGCTGAGATTGAGAAAAAGAAAGATGAGCAACCAAAGCAGGTCATATGGGATGGTCACACTGGAAGCATTGGCCGTACAGCAAATCAGGCCATGTCACAGAATATCAATGGAGAGGATCAGAACGATGTTAACAATCTTCCTGGTCCAGCAGCGCCTCCTCCAAGACCTGGTGTGCCTTCAATTCCTCGTCCTCTTCCCCCACCACCTGGTCTTGCCTTGAATCTTCCTCGTGTTCCTCCAAACACAGTTCAGTATTCTGCTCCGTCTAGTGGTGGACTCCCAGTACCTCAACTGAGGCCGCCAGTCCAATATTCATCAGTTCGACCACCTGGACCTCCAATGCCCATGAGTTCTGGACAGCAGTCACTTTTGGTGAATCGACCACCACCTATGCATCCATCAATGTCTATGAATGCTCCTAGTAATCCTGTACCTCCTCCACCTGGTTCTCAGTTTACACCTATGCAAGCCCCCCGGCCTTACATGCAAATGATGCCTCCACCACCTTCAATGCAAATGATGCCTCCACCACCTATGCCTCATGGAATGATGCCTCCGCCACCTCCACCTGAGGAAGCTCCTCCACCACTCCCAGAGGAACCTGAGCCCAAGCGGCAGAAGCTTGATGACTCCATGCTTATTGCAGAAGATAAATTTCTGGCTCAGCATCCAGGGCCTGTTCGTATCACCGTATCTGTTCCCAATGTTGATGAAGGCAATCTCAAAGGACAACTTTTGGAGATCACAGTTCAGTCTTTATCTGAAACTGTTGGAAGTCTGAAAGAGAAAATTTCTGGGGAGATCCAGCTTCCGGCAAACAAACAAAAATTGAGTGGAAAACCTGGCTTTCTCAAGGACAATTTGTCTCTTGCATATTACAATGTTGGAGCAGGAGAAACACTTGCTCTTTCATTGAGAGAACGTGGTGGTAGAAAGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031323 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP21_like_P Surp ubiquitin

Protein Analysis

803

Amino Acids

89.25

Weight (kDa)

5.08

Isoelectric Point (pI)

59.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Surp	PF01805	66 - 117	3e-21	Surp module
Surp	PF01805	190 - 241	1.9e-17	Surp module
PRP21_like_P	PF12230	260 - 472	3.1e-56	Pre-mRNA splicing factor PRP21 like protein
ubiquitin	PF00240	732 - 798	7e-08	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14650 AT1G14650 AT1G14650
fragaria_vesca	FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440
malus_domestica	MD13G1244100.v1.1 MD16G1250800.v1.1
prunus_persica	Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1
pyrus_communis	pycom13g21530 pycom16g21040
rosa_chinensis	RchiOBHm_Chr4g0399901
rosa_laevigata	RLG00000009234
rosa_multiflora	Rmu_co8505131.1_g000001 Rmu_sc0014676.1_g000002
rosa_roxburghii	Rroxscaffold_5G00344760
rosa_rugosa	Rorug04G0020000 Rorug04G0020100 Rorug04G0020200 Rorug04G0020200
rosa_samantha	Rh4AG097000 Rh4BG094600 Rh4CG106100
rosa_wichuraiana	Rw4G008020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	992
Acc36I	ACCTGC	1 cut(s)	1498
AccB1I	GGYRCC	1 cut(s)	133
AccB7I	CCANNNNNTGG	2 cut(s)	1637, 1676
AccI	GTMKAC	1 cut(s)	530
AccIII	TCCGGA	1 cut(s)	1423
AciI	CCGC	4 cut(s)	1769, 2027, 2083, 2407
AclWI	GGATC	8 cut(s)	305, 318, 464, 1151, 1220, 1307, 1593, 2266
AcoI	YGGCCR	3 cut(s)	373, 711, 1540
AcsI	RAATTY	5 cut(s)	245, 347, 1299, 2123, 2259
AcuI	CTGAAG	3 cut(s)	99, 692, 879
AfaI	GTAC	6 cut(s)	317, 495, 1438, 1546, 1755, 1902
AflII	CTTAAG	1 cut(s)	764
AgeI	ACCGGT	1 cut(s)	336
AgsI	TTSAA	9 cut(s)	106, 509, 800, 926, 1088, 1115, 1650, 1690, 1980
AhdI	GACNNNNNGTC	1 cut(s)	2332
AleI	CACNNNNGTG	1 cut(s)	80
Alw26I	GTCTC	4 cut(s)	145, 1189, 1355, 2340
AlwI	GGATC	8 cut(s)	305, 318, 464, 1151, 1220, 1307, 1593, 2266
AlwNI	CAGNNNCTG	2 cut(s)	440, 2147
Aor13HI	TCCGGA	1 cut(s)	1423
ApeKI	GCWGC	4 cut(s)	407, 437, 1078, 1619
ApoI	RAATTY	5 cut(s)	245, 347, 1299, 2123, 2259
AsiGI	ACCGGT	1 cut(s)	336
AspLEI	GCGC	1 cut(s)	1624
AspS9I	GGNCC	6 cut(s)	53, 239, 1405, 1613, 1802, 2144
AsuC2I	CCSGG	1 cut(s)	1945
AsuHPI	GGTGA	4 cut(s)	458, 694, 1855, 2149
AsuII	TTCGAA	1 cut(s)	725
AsuNHI	GCTAGC	1 cut(s)	64
AvaII	GGWCC	3 cut(s)	239, 1613, 1802
AxyI	CCTNAGG	2 cut(s)	1200, 2040
BaeGI	GKGCMC	1 cut(s)	358
BalI	TGGCCA	1 cut(s)	375
BamHI	GGATCC	1 cut(s)	310
BanI	GGYRCC	1 cut(s)	133
BanII	GRGCYC	1 cut(s)	2079
BarI	GAAGNNNNNNTAC	2 cut(s)	991, 1023
BauI	CACGAG	1 cut(s)	1698
BbsI	GAAGAC	1 cut(s)	360
BbvI	GCAGC	4 cut(s)	394, 424, 1090, 1631
BccI	CCATC	5 cut(s)	35, 437, 1042, 1514, 1876
BceAI	ACGGC	1 cut(s)	1527
BcgI	CGANNNNNNTGC	2 cut(s)	389, 423
BciVI	GTATCC	1 cut(s)	876
BcnI	CCSGG	1 cut(s)	1945
BcoDI	GTCTC	4 cut(s)	145, 1189, 1355, 2340
BfaI	CTAG	4 cut(s)	65, 159, 1737, 1890
BfmI	CTRYAG	2 cut(s)	1215, 1440
BfoI	RGCGCY	1 cut(s)	1625
BfrI	CTTAAG	1 cut(s)	764
BfuAI	ACCTGC	1 cut(s)	1498
BfuI	GTATCC	1 cut(s)	876
BglI	GCCNNNNNGGC	1 cut(s)	2083
BisI	GCNGC	6 cut(s)	408, 438, 1079, 1620, 1769, 2084
BlpI	GCTNAGC	1 cut(s)	2133
BlsI	GCNGC	6 cut(s)	409, 439, 1080, 1621, 1770, 2085
Bme18I	GGWCC	3 cut(s)	239, 1613, 1802
BmeRI	GACNNNNNGTC	1 cut(s)	2332
BmgT120I	GGNCC	6 cut(s)	53, 239, 1405, 1613, 1802, 2144
BmiI	GGNNCC	6 cut(s)	10, 54, 135, 312, 393, 2070
BmrI	ACTGGG	6 cut(s)	214, 475, 586, 652, 1266, 1745
BmsI	GCATC	8 cut(s)	706, 726, 820, 1873, 1953, 1980, 2010, 2146
BmtI	GCTAGC	1 cut(s)	68
BmuI	ACTGGG	6 cut(s)	214, 475, 586, 652, 1266, 1745
BoxI	GACNNNNGTC	1 cut(s)	1831
BpiI	GAAGAC	1 cut(s)	360
BplI	GAGNNNNNCTC	2 cut(s)	1288, 1320
BpmI	CTGGAG	3 cut(s)	417, 579, 839
Bpu10I	CCTNAGC	2 cut(s)	1374, 2073
Bpu1102I	GCTNAGC	1 cut(s)	2133
Bpu14I	TTCGAA	1 cut(s)	725
BpuEI	CTTGAG	4 cut(s)	819, 1001, 1375, 2306
BpuMI	CCSGG	1 cut(s)	1945
BsaBI	GATNNNNATC	1 cut(s)	170
BsaI	GGTCTC	2 cut(s)	1189, 1355
BsaJI	CCNNGG	6 cut(s)	49, 69, 306, 357, 1943, 2141
BsaWI	WCCGGW	2 cut(s)	336, 1423
Bse118I	RCCGGY	1 cut(s)	336
Bse21I	CCTNAGG	2 cut(s)	1200, 2040
Bse8I	GATNNNNATC	1 cut(s)	170
BseAI	TCCGGA	1 cut(s)	1423
BseDI	CCNNGG	6 cut(s)	49, 69, 306, 357, 1943, 2141
BseGI	GGATG	8 cut(s)	178, 958, 1069, 1347, 1384, 1525, 1864, 2137
BseJI	GATNNNNATC	1 cut(s)	170
BseRI	GAGGAG	9 cut(s)	21, 125, 174, 957, 998, 1217, 1617, 1896, 2040
BseSI	GKGCMC	1 cut(s)	358
BseXI	GCAGC	4 cut(s)	394, 424, 1090, 1631
BsgI	GTGCAG	1 cut(s)	393
BshNI	GGYRCC	1 cut(s)	133
BshTI	ACCGGT	1 cut(s)	336
BsiSI	CCGG	4 cut(s)	337, 1424, 1945, 2282
BsmAI	GTCTC	4 cut(s)	145, 1189, 1355, 2340
BsmI	GAATGC	1 cut(s)	1888
Bso31I	GGTCTC	2 cut(s)	1189, 1355
Bsp119I	TTCGAA	1 cut(s)	725
Bsp1286I	GDGCHC	2 cut(s)	358, 2079
Bsp13I	TCCGGA	1 cut(s)	1423
Bsp1720I	GCTNAGC	1 cut(s)	2133
BspACI	CCGC	4 cut(s)	1769, 2027, 2083, 2407
BspEI	TCCGGA	1 cut(s)	1423
BspLI	GGNNCC	6 cut(s)	10, 54, 135, 312, 393, 2070
BspMAI	CTGCAG	1 cut(s)	1219
BspMI	ACCTGC	1 cut(s)	1498
BspOI	GCTAGC	1 cut(s)	68
BspPI	GGATC	8 cut(s)	305, 318, 464, 1151, 1220, 1307, 1593, 2266
BspT104I	TTCGAA	1 cut(s)	725
BspT107I	GGYRCC	1 cut(s)	133
BspTI	CTTAAG	1 cut(s)	764
BspTNI	GGTCTC	2 cut(s)	1189, 1355
BsrFI	RCCGGY	1 cut(s)	336
BssAI	RCCGGY	1 cut(s)	336
BssECI	CCNNGG	6 cut(s)	49, 69, 306, 357, 1943, 2141
BssNAI	GTATAC	1 cut(s)	531
BssSI	CACGAG	1 cut(s)	1698
Bst1107I	GTATAC	1 cut(s)	531
Bst2BI	CACGAG	1 cut(s)	1698
Bst4CI	ACNGT	6 cut(s)	535, 793, 1717, 2161, 2218, 2239
Bst6I	CTCTTC	6 cut(s)	87, 248, 1083, 1110, 1187, 1668
BstAFI	CTTAAG	1 cut(s)	764
BstAPI	GCANNNNNTGC	2 cut(s)	1963, 1990
BstBI	TTCGAA	1 cut(s)	725
BstC8I	GCNNGC	8 cut(s)	27, 66, 377, 425, 429, 843, 1104, 1938
BstENI	CCTNNNNNAGG	3 cut(s)	417, 744, 983
BstF5I	GGATG	8 cut(s)	178, 958, 1069, 1347, 1384, 1525, 1864, 2137
BstH2I	RGCGCY	1 cut(s)	1625
BstHHI	GCGC	1 cut(s)	1624
BstMAI	GTCTC	4 cut(s)	145, 1189, 1355, 2340
BstNSI	RCATGY	1 cut(s)	1957
BstPAI	GACNNNNGTC	1 cut(s)	1831
BstSFI	CTRYAG	2 cut(s)	1215, 1440
BstSLI	GKGCMC	1 cut(s)	358
BstV1I	GCAGC	4 cut(s)	394, 424, 1090, 1631
BstV2I	GAAGAC	1 cut(s)	360
BstX2I	RGATCY	3 cut(s)	310, 1225, 2271
BstYI	RGATCY	3 cut(s)	310, 1225, 2271
BstZ17I	GTATAC	1 cut(s)	531
Bsu36I	CCTNAGG	2 cut(s)	1200, 2040
BsuI	GTATCC	1 cut(s)	876
BtsCI	GGATG	8 cut(s)	178, 958, 1069, 1347, 1384, 1525, 1864, 2137
BtsIMutI	CAGTG	2 cut(s)	75, 1527
BveI	ACCTGC	1 cut(s)	1498
Cac8I	GCNNGC	8 cut(s)	27, 66, 377, 425, 429, 843, 1104, 1938
CaiI	CAGNNNCTG	2 cut(s)	440, 2147
CfoI	GCGC	1 cut(s)	1624
Cfr10I	RCCGGY	1 cut(s)	336
Cfr13I	GGNCC	6 cut(s)	53, 239, 1405, 1613, 1802, 2144
CsiI	ACCWGGT	3 cut(s)	1636, 1675, 1912
Csp6I	GTAC	6 cut(s)	316, 494, 1437, 1545, 1754, 1901
CspAI	ACCGGT	1 cut(s)	336
CviQI	GTAC	6 cut(s)	316, 494, 1437, 1545, 1754, 1901
DriI	GACNNNNNGTC	1 cut(s)	2332
EaeI	YGGCCR	3 cut(s)	373, 711, 1540
Eam1104I	CTCTTC	6 cut(s)	87, 248, 1083, 1110, 1187, 1668
Eam1105I	GACNNNNNGTC	1 cut(s)	2332
EarI	CTCTTC	6 cut(s)	87, 248, 1083, 1110, 1187, 1668
EciI	GGCGGA	1 cut(s)	2016
Eco147I	AGGCCT	1 cut(s)	423
Eco24I	GRGCYC	1 cut(s)	2079
Eco31I	GGTCTC	2 cut(s)	1189, 1355
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	3 cut(s)	239, 1613, 1802
Eco57I	CTGAAG	3 cut(s)	99, 692, 879
Eco81I	CCTNAGG	2 cut(s)	1200, 2040
EcoNI	CCTNNNNNAGG	3 cut(s)	417, 744, 983
EcoO109I	RGGNCCY	2 cut(s)	53, 2144
EcoRV	GATATC	1 cut(s)	193
EcoT22I	ATGCAT	2 cut(s)	721, 1866
EcoT38I	GRGCYC	1 cut(s)	2079
FalI	AAGNNNNNCTT	4 cut(s)	1095, 1127, 2187, 2219
FauNDI	CATATG	2 cut(s)	1293, 1514
FblI	GTMKAC	1 cut(s)	530
Fnu4HI	GCNGC	6 cut(s)	408, 438, 1079, 1620, 1769, 2084
FokI	GGATG	8 cut(s)	165, 965, 1076, 1354, 1391, 1532, 1851, 2124
FriOI	GRGCYC	1 cut(s)	2079
Fsp4HI	GCNGC	6 cut(s)	408, 438, 1079, 1620, 1769, 2084
FspBI	CTAG	4 cut(s)	65, 159, 1737, 1890
GlaI	GCGC	1 cut(s)	1623
GluI	GCNGC	6 cut(s)	408, 438, 1079, 1620, 1769, 2084
GsuI	CTGGAG	3 cut(s)	417, 579, 839
HaeII	RGCGCY	1 cut(s)	1625
HapII	CCGG	4 cut(s)	337, 1424, 1945, 2282
HhaI	GCGC	1 cut(s)	1624
Hin6I	GCGC	1 cut(s)	1622
HinP1I	GCGC	1 cut(s)	1622
HincII	GTYRAC	2 cut(s)	208, 1600
HindII	GTYRAC	2 cut(s)	208, 1600
HindIII	AAGCTT	2 cut(s)	761, 2090
HinfI	GANTC	8 cut(s)	401, 416, 1034, 1210, 1690, 1746, 1846, 2099
HpaI	GTTAAC	1 cut(s)	1600
HpaII	CCGG	4 cut(s)	337, 1424, 1945, 2282
HphI	GGTGA	4 cut(s)	458, 694, 1855, 2149
Hpy166II	GTNNAC	5 cut(s)	208, 531, 1600, 1745, 1926
Hpy188I	TCNGA	8 cut(s)	197, 310, 346, 672, 1288, 1590, 2233, 2250
Hpy8I	GTNNAC	5 cut(s)	208, 531, 1600, 1745, 1926
HpyAV	CCTTC	7 cut(s)	393, 542, 721, 847, 1656, 1986, 2177
HpyCH4III	ACNGT	6 cut(s)	535, 793, 1717, 2161, 2218, 2239
HpyCH4IV	ACGT	1 cut(s)	2392
HpySE526I	ACGT	1 cut(s)	2392
HspAI	GCGC	1 cut(s)	1622
Kpn2I	TCCGGA	1 cut(s)	1423
KspAI	GTTAAC	1 cut(s)	1600
Lsp1109I	GCAGC	4 cut(s)	394, 424, 1090, 1631
LweI	GCATC	8 cut(s)	706, 726, 820, 1873, 1953, 1980, 2010, 2146
MabI	ACCWGGT	3 cut(s)	1636, 1675, 1912
MaeI	CTAG	4 cut(s)	65, 159, 1737, 1890
MaeII	ACGT	1 cut(s)	2392
MaeIII	GTNAC	6 cut(s)	73, 1006, 1147, 1523, 1563, 1833
MflI	RGATCY	3 cut(s)	310, 1225, 2271
MhlI	GDGCHC	2 cut(s)	358, 2079
MlsI	TGGCCA	1 cut(s)	375
MluNI	TGGCCA	1 cut(s)	375
MlyI	GAGTC	3 cut(s)	1043, 1740, 2093
MmeI	TCCRAC	3 cut(s)	1253, 2221, 2335
Mox20I	TGGCCA	1 cut(s)	375
Mph1103I	ATGCAT	2 cut(s)	721, 1866
MroI	TCCGGA	1 cut(s)	1423
MscI	TGGCCA	1 cut(s)	375
MseI	TTAA	4 cut(s)	291, 579, 765, 1599
MslI	CAYNNNNRTG	2 cut(s)	80, 1958
Msp20I	TGGCCA	1 cut(s)	375
MspA1I	CMGCKG	1 cut(s)	437
MspCI	CTTAAG	1 cut(s)	764
MspI	CCGG	4 cut(s)	337, 1424, 1945, 2282
Mva1269I	GAATGC	1 cut(s)	1888
NciI	CCSGG	1 cut(s)	1945
NdeI	CATATG	2 cut(s)	1293, 1514
NheI	GCTAGC	1 cut(s)	64
NlaIV	GGNNCC	6 cut(s)	10, 54, 135, 312, 393, 2070
NmeAIII	GCCGAG	1 cut(s)	547
NmuCI	GTSAC	4 cut(s)	73, 1523, 1563, 1833
NsiI	ATGCAT	2 cut(s)	721, 1866
NspI	RCATGY	1 cut(s)	1957
NspV	TTCGAA	1 cut(s)	725
OliI	CACNNNNGTG	1 cut(s)	80
PceI	AGGCCT	1 cut(s)	423
PctI	GAATGC	1 cut(s)	1888
PfeI	GAWTC	5 cut(s)	401, 416, 1210, 1690, 1846
PflMI	CCANNNNNTGG	2 cut(s)	1637, 1676
PinAI	ACCGGT	1 cut(s)	336
PkrI	GCNGC	6 cut(s)	409, 439, 1080, 1621, 1770, 2085
PleI	GAGTC	3 cut(s)	1042, 1740, 2093
PpsI	GAGTC	3 cut(s)	1042, 1740, 2093
PshAI	GACNNNNGTC	1 cut(s)	1831
PsiI	TTATAA	1 cut(s)	992
PspN4I	GGNNCC	6 cut(s)	10, 54, 135, 312, 393, 2070
PspPI	GGNCC	6 cut(s)	53, 239, 1405, 1613, 1802, 2144
PsrI	GAACNNNNNNTAC	2 cut(s)	486, 518
PstI	CTGCAG	1 cut(s)	1219
PstNI	CAGNNNCTG	2 cut(s)	440, 2147
PsuI	RGATCY	3 cut(s)	310, 1225, 2271
PvuII	CAGCTG	1 cut(s)	437
RsaI	GTAC	6 cut(s)	317, 495, 1438, 1546, 1755, 1902
RsaNI	GTAC	6 cut(s)	316, 494, 1437, 1545, 1754, 1901
RseI	CAYNNNNRTG	2 cut(s)	80, 1958
SaqAI	TTAA	4 cut(s)	291, 579, 765, 1599
SatI	GCNGC	6 cut(s)	408, 438, 1079, 1620, 1769, 2084
Sau96I	GGNCC	6 cut(s)	53, 239, 1405, 1613, 1802, 2144
SchI	GAGTC	3 cut(s)	1043, 1740, 2093
SduI	GDGCHC	2 cut(s)	358, 2079
SexAI	ACCWGGT	3 cut(s)	1636, 1675, 1912
SfaNI	GCATC	8 cut(s)	706, 726, 820, 1873, 1953, 1980, 2010, 2146
SfcI	CTRYAG	2 cut(s)	1215, 1440
SfuI	TTCGAA	1 cut(s)	725
SinI	GGWCC	3 cut(s)	239, 1613, 1802
SmiMI	CAYNNNNRTG	2 cut(s)	80, 1958
SmlI	CTYRAG	5 cut(s)	764, 834, 980, 1390, 2321
SmoI	CTYRAG	5 cut(s)	764, 834, 980, 1390, 2321
SseBI	AGGCCT	1 cut(s)	423
SsiI	CCGC	4 cut(s)	1769, 2027, 2083, 2407
SspI	AATATT	1 cut(s)	1781
SspMI	CTAG	4 cut(s)	65, 159, 1737, 1890
StuI	AGGCCT	1 cut(s)	423
TaaI	ACNGT	6 cut(s)	535, 793, 1717, 2161, 2218, 2239
TaiI	ACGT	1 cut(s)	2395
TaqI	TCGA	4 cut(s)	604, 725, 1792, 1849
TauI	GCSGC	2 cut(s)	1771, 2086
TfiI	GAWTC	5 cut(s)	401, 416, 1210, 1690, 1846
Tru1I	TTAA	4 cut(s)	291, 579, 765, 1599
Tru9I	TTAA	4 cut(s)	291, 579, 765, 1599
TscAI	CASTG	2 cut(s)	82, 1534
TseFI	GTSAC	4 cut(s)	73, 1523, 1563, 1833
TseI	GCWGC	4 cut(s)	407, 437, 1078, 1619
Tsp45I	GTSAC	4 cut(s)	73, 1523, 1563, 1833
TspGWI	ACGGA	2 cut(s)	303, 1722
TspRI	CASTG	2 cut(s)	82, 1534
Van91I	CCANNNNNTGG	2 cut(s)	1637, 1676
Vha464I	CTTAAG	1 cut(s)	764
VpaK11BI	GGWCC	3 cut(s)	239, 1613, 1802
XagI	CCTNNNNNAGG	3 cut(s)	417, 744, 983
XapI	RAATTY	5 cut(s)	245, 347, 1299, 2123, 2259
XceI	RCATGY	1 cut(s)	1957
XmiI	GTMKAC	1 cut(s)	530
XspI	CTAG	4 cut(s)	65, 159, 1737, 1890
Zsp2I	ATGCAT	2 cut(s)	721, 1866

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.