Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001998

Physical Location & Seq

Genomic Coordinates Forward (+)

19194076 .. 19194933

Gene Structure 858 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g21040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCTATGATTGATTGGCATGATTTTGTTGTGGTTGAAACAATAGACTTTGCAGATGATGAGGATGAGGATTTACCTCCTCCGATGACCCTTGAGGAGGTTATAAGGAGAAGCAAGAACGCAGATATGGAAGAAGACGTTGAGCCTGGTAAGGTGGTGGAAATGGAAATGGATGAAGAAGAGATGCAGCTTGTTGAAGAGGGCTTGAGGACATCTAGACTTGAAGAGAATGATGATGAAAAGAAGAATGAGAATGTGGTGACAGAGGACCCAGAACCACCAATGAGAATTGTGAAGAACTGGAAGAGACCCGAGGACAGGATCCCTGCCGAAAGAGACCCAACAAAGTATGTCATTTCCCCAATCACTGGAGAGCTTATCCTGATCAACGAGATGTCTGAACATATGAGGATTTCTCTCATTGATCCAAAATACAAAGAGCAAAAGGAACGGATGTTTGCTAAGATTCGGGAGACTACTCTTGCTCAAGATGATGAAATCTCAAGAAACATTGTGGGCCTTGCGCGAACCTGTCCTGATATTTTTGGTACCACAGAGGAAGAAGTTTCTAACGCAGTCAAGGCTGATATTGAGAAAAAGAAAGATGAGCAACCAAAGCAGGTCATTTGGGATGGTCACACTGGAAGTATTGGCCGCACAGCAAATCAAGCAATGTCGCAGAATATCAATGGAGAGGACCAAAATGATGGTCTCAACAATGATGCTAGGAACCTTCCTGGTCCTGCAGCTCCTCCTCCAAGACCTGGTGTGCCTTCAATTCGTCCTCTTCCTCCACCACCTGGTCTTGCCTTGAATACCTCGTCCTCCAAACACAGTCCAGTATTCTGCTCCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031323 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP21_like_P Surp ubiquitin

Protein Analysis

286

Amino Acids

32.18

Weight (kDa)

4.51

Isoelectric Point (pI)

58.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRP21_like_P	PF12230	1 - 176	1.3e-41	Pre-mRNA splicing factor PRP21 like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14650 AT1G14650 AT1G14650
fragaria_vesca	FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440
malus_domestica	MD13G1244100.v1.1 MD16G1250800.v1.1
prunus_persica	Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1
pyrus_communis	pycom13g21530 pycom16g21040
rosa_chinensis	RchiOBHm_Chr4g0399901
rosa_laevigata	RLG00000009234
rosa_multiflora	Rmu_co8505131.1_g000001 Rmu_sc0014676.1_g000002
rosa_roxburghii	Rroxscaffold_5G00344760
rosa_rugosa	Rorug04G0020000 Rorug04G0020100 Rorug04G0020200 Rorug04G0020200
rosa_samantha	Rh4AG097000 Rh4BG094600 Rh4CG106100
rosa_wichuraiana	Rw4G008020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	104
Acc36I	ACCTGC	1 cut(s)	610
Acc65I	GGTACC	1 cut(s)	548
AccB1I	GGYRCC	1 cut(s)	548
AccB7I	CCANNNNNTGG	3 cut(s)	368, 764, 800
AccII	CGCG	1 cut(s)	526
AciI	CCGC	1 cut(s)	655
AclWI	GGATC	3 cut(s)	316, 329, 419
AcoI	YGGCCR	1 cut(s)	652
AfaI	GTAC	1 cut(s)	550
AfiI	CCNNNNNNNGG	5 cut(s)	97, 318, 368, 764, 800
AgsI	TTSAA	5 cut(s)	38, 197, 224, 777, 814
AjnI	CCWGG	4 cut(s)	145, 736, 763, 799
AluBI	AGCT	3 cut(s)	190, 376, 749
AluI	AGCT	3 cut(s)	190, 376, 749
Alw26I	GTCTC	4 cut(s)	301, 330, 467, 716
AlwI	GGATC	3 cut(s)	316, 329, 419
Ama87I	CYCGRG	1 cut(s)	311
AoxI	GGCC	2 cut(s)	517, 652
ApeKI	GCWGC	2 cut(s)	187, 746
ArsI	GACNNNNNNTTYG	2 cut(s)	694, 726
Asp718I	GGTACC	1 cut(s)	548
AspLEI	GCGC	1 cut(s)	526
AspS9I	GGNCC	4 cut(s)	268, 517, 697, 740
AsuHPI	GGTGA	1 cut(s)	271
AvaI	CYCGRG	1 cut(s)	311
AvaII	GGWCC	3 cut(s)	268, 697, 740
BamHI	GGATCC	1 cut(s)	321
BanI	GGYRCC	1 cut(s)	548
BbsI	GAAGAC	1 cut(s)	141
BbvI	GCAGC	2 cut(s)	199, 758
BccI	CCATC	2 cut(s)	626, 701
BciT130I	CCWGG	4 cut(s)	147, 738, 765, 801
BclI	TGATCA	1 cut(s)	384
BcoDI	GTCTC	4 cut(s)	301, 330, 467, 716
BfaI	CTAG	3 cut(s)	216, 726, 856
BfmI	CTRYAG	1 cut(s)	744
BfuAI	ACCTGC	1 cut(s)	610
BisI	GCNGC	3 cut(s)	188, 655, 747
BlsI	GCNGC	3 cut(s)	189, 656, 748
Bme1390I	CCNGG	4 cut(s)	147, 738, 765, 801
Bme18I	GGWCC	3 cut(s)	268, 697, 740
BmeT110I	CYCGRG	1 cut(s)	311
BmgT120I	GGNCC	4 cut(s)	268, 517, 697, 740
BmiI	GGNNCC	4 cut(s)	270, 323, 550, 731
BmrFI	CCNGG	4 cut(s)	147, 738, 765, 801
BmsI	GCATC	2 cut(s)	174, 712
BpiI	GAAGAC	1 cut(s)	141
BplI	GAGNNNNNCTC	2 cut(s)	400, 432
BpmI	CTGGAG	1 cut(s)	390
BpuEI	CTTGAG	4 cut(s)	113, 226, 471, 487
BsaI	GGTCTC	3 cut(s)	301, 330, 716
BsaJI	CCNNGG	1 cut(s)	312
Bsc4I	CCNNNNNNNGG	5 cut(s)	97, 318, 368, 764, 800
Bse1I	ACTGG	4 cut(s)	305, 373, 646, 839
Bse3DI	GCAATG	1 cut(s)	678
BseBI	CCWGG	4 cut(s)	147, 738, 765, 801
BseDI	CCNNGG	1 cut(s)	312
BseGI	GGATG	4 cut(s)	70, 178, 459, 637
BseLI	CCNNNNNNNGG	5 cut(s)	97, 318, 368, 764, 800
BseMI	GCAATG	1 cut(s)	678
BseNI	ACTGG	4 cut(s)	305, 373, 646, 839
BseRI	GAGGAG	4 cut(s)	69, 110, 741, 744
BseXI	GCAGC	2 cut(s)	199, 758
Bsh1236I	CGCG	1 cut(s)	526
BshFI	GGCC	2 cut(s)	519, 654
BshNI	GGYRCC	1 cut(s)	548
BsiHKCI	CYCGRG	1 cut(s)	311
BslI	CCNNNNNNNGG	5 cut(s)	97, 318, 368, 764, 800
BsmAI	GTCTC	4 cut(s)	301, 330, 467, 716
BsnI	GGCC	2 cut(s)	519, 654
Bso31I	GGTCTC	3 cut(s)	301, 330, 716
BsoBI	CYCGRG	1 cut(s)	311
Bsp143I	GATC	3 cut(s)	321, 384, 424
BspACI	CCGC	1 cut(s)	655
BspANI	GGCC	2 cut(s)	519, 654
BspFNI	CGCG	1 cut(s)	526
BspLI	GGNNCC	4 cut(s)	270, 323, 550, 731
BspMAI	CTGCAG	1 cut(s)	748
BspMI	ACCTGC	1 cut(s)	610
BspPI	GGATC	3 cut(s)	316, 329, 419
BspT107I	GGYRCC	1 cut(s)	548
BspTNI	GGTCTC	3 cut(s)	301, 330, 716
BsrDI	GCAATG	1 cut(s)	678
BsrI	ACTGG	4 cut(s)	305, 373, 646, 839
BssECI	CCNNGG	1 cut(s)	312
BssMI	GATC	3 cut(s)	321, 384, 424
Bst2UI	CCWGG	4 cut(s)	147, 738, 765, 801
Bst4CI	ACNGT	1 cut(s)	836
Bst6I	CTCTTC	5 cut(s)	174, 192, 219, 299, 792
BstDEI	CTNAG	1 cut(s)	462
BstENI	CCTNNNNNAGG	1 cut(s)	95
BstF5I	GGATG	4 cut(s)	70, 178, 459, 637
BstFNI	CGCG	1 cut(s)	526
BstHHI	GCGC	1 cut(s)	526
BstKTI	GATC	3 cut(s)	324, 387, 427
BstMAI	GTCTC	4 cut(s)	301, 330, 467, 716
BstMBI	GATC	3 cut(s)	321, 384, 424
BstMWI	GCNNNNNNNGC	3 cut(s)	581, 616, 668
BstNI	CCWGG	4 cut(s)	147, 738, 765, 801
BstSCI	CCNGG	4 cut(s)	145, 736, 763, 799
BstSFI	CTRYAG	1 cut(s)	744
BstUI	CGCG	1 cut(s)	526
BstV1I	GCAGC	2 cut(s)	199, 758
BstV2I	GAAGAC	1 cut(s)	141
BstX2I	RGATCY	1 cut(s)	321
BstXI	CCANNNNNNTGG	1 cut(s)	707
BstYI	RGATCY	1 cut(s)	321
BsuRI	GGCC	2 cut(s)	519, 654
BtsCI	GGATG	4 cut(s)	70, 178, 459, 637
BtsIMutI	CAGTG	2 cut(s)	366, 639
BveI	ACCTGC	1 cut(s)	610
CfoI	GCGC	1 cut(s)	526
Cfr13I	GGNCC	4 cut(s)	268, 517, 697, 740
CsiI	ACCWGGT	2 cut(s)	763, 799
Csp6I	GTAC	1 cut(s)	549
CviAII	CATG	1 cut(s)	20
CviJI	RGCY	9 cut(s)	5, 145, 190, 204, 376, 519, 584, 654, 749
CviKI_1	RGCY	9 cut(s)	5, 145, 190, 204, 376, 519, 584, 654, 749
CviQI	GTAC	1 cut(s)	549
DdeI	CTNAG	1 cut(s)	462
DpnI	GATC	3 cut(s)	323, 386, 426
DpnII	GATC	3 cut(s)	321, 384, 424
EaeI	YGGCCR	1 cut(s)	652
Eam1104I	CTCTTC	5 cut(s)	174, 192, 219, 299, 792
EarI	CTCTTC	5 cut(s)	174, 192, 219, 299, 792
Eco31I	GGTCTC	3 cut(s)	301, 330, 716
Eco47I	GGWCC	3 cut(s)	268, 697, 740
Eco88I	CYCGRG	1 cut(s)	311
EcoNI	CCTNNNNNAGG	1 cut(s)	95
EcoO109I	RGGNCCY	1 cut(s)	268
EcoRII	CCWGG	4 cut(s)	145, 736, 763, 799
FaeI	CATG	1 cut(s)	23
FaiI	YATR	7 cut(s)	8, 21, 104, 128, 351, 405, 407
FatI	CATG	1 cut(s)	19
FauNDI	CATATG	1 cut(s)	405
FbaI	TGATCA	1 cut(s)	384
Fnu4HI	GCNGC	3 cut(s)	188, 655, 747
FokI	GGATG	4 cut(s)	77, 185, 466, 644
Fsp4HI	GCNGC	3 cut(s)	188, 655, 747
FspBI	CTAG	3 cut(s)	216, 726, 856
GlaI	GCGC	1 cut(s)	525
GluI	GCNGC	3 cut(s)	188, 655, 747
GsuI	CTGGAG	1 cut(s)	390
HaeIII	GGCC	2 cut(s)	519, 654
HhaI	GCGC	1 cut(s)	526
Hin1II	CATG	1 cut(s)	23
Hin6I	GCGC	1 cut(s)	524
HinP1I	GCGC	1 cut(s)	524
HinfI	GANTC	1 cut(s)	466
HphI	GGTGA	1 cut(s)	271
Hpy188I	TCNGA	2 cut(s)	84, 400
Hpy188III	TCNNGA	6 cut(s)	216, 382, 470, 488, 504, 536
HpyAV	CCTTC	2 cut(s)	743, 783
HpyCH4III	ACNGT	1 cut(s)	836
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	3 cut(s)	53, 187, 746
HpyF10VI	GCNNNNNNNGC	3 cut(s)	581, 616, 668
HpyF3I	CTNAG	1 cut(s)	462
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	1 cut(s)	23
HspAI	GCGC	1 cut(s)	524
KpnI	GGTACC	1 cut(s)	552
Ksp22I	TGATCA	1 cut(s)	384
Kzo9I	GATC	3 cut(s)	321, 384, 424
LmnI	GCTCC	2 cut(s)	754, 854
Lsp1109I	GCAGC	2 cut(s)	199, 758
LweI	GCATC	2 cut(s)	174, 712
MabI	ACCWGGT	2 cut(s)	763, 799
MaeI	CTAG	3 cut(s)	216, 726, 856
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	2 cut(s)	259, 635
MalI	GATC	3 cut(s)	323, 386, 426
MboI	GATC	3 cut(s)	321, 384, 424
MflI	RGATCY	1 cut(s)	321
MluCI	AATT	2 cut(s)	288, 777
MspR9I	CCNGG	4 cut(s)	147, 738, 765, 801
MvaI	CCWGG	4 cut(s)	147, 738, 765, 801
MvnI	CGCG	1 cut(s)	526
MwoI	GCNNNNNNNGC	3 cut(s)	581, 616, 668
NdeI	CATATG	1 cut(s)	405
NdeII	GATC	3 cut(s)	321, 384, 424
NlaIII	CATG	1 cut(s)	23
NlaIV	GGNNCC	4 cut(s)	270, 323, 550, 731
NmuCI	GTSAC	2 cut(s)	259, 635
PfeI	GAWTC	1 cut(s)	466
PflMI	CCANNNNNTGG	3 cut(s)	368, 764, 800
PkrI	GCNGC	3 cut(s)	189, 656, 748
PpuMI	RGGWCCY	1 cut(s)	268
PsiI	TTATAA	1 cut(s)	104
Psp5II	RGGWCCY	1 cut(s)	268
Psp6I	CCWGG	4 cut(s)	145, 736, 763, 799
PspGI	CCWGG	4 cut(s)	145, 736, 763, 799
PspN4I	GGNNCC	4 cut(s)	270, 323, 550, 731
PspPI	GGNCC	4 cut(s)	268, 517, 697, 740
PspPPI	RGGWCCY	1 cut(s)	268
PstI	CTGCAG	1 cut(s)	748
PsuI	RGATCY	1 cut(s)	321
RsaI	GTAC	1 cut(s)	550
RsaNI	GTAC	1 cut(s)	549
SatI	GCNGC	3 cut(s)	188, 655, 747
Sau3AI	GATC	3 cut(s)	321, 384, 424
Sau96I	GGNCC	4 cut(s)	268, 517, 697, 740
ScrFI	CCNGG	4 cut(s)	147, 738, 765, 801
SexAI	ACCWGGT	2 cut(s)	763, 799
SfaNI	GCATC	2 cut(s)	174, 712
SfcI	CTRYAG	1 cut(s)	744
SinI	GGWCC	3 cut(s)	268, 697, 740
SmlI	CTYRAG	4 cut(s)	92, 205, 486, 502
SmoI	CTYRAG	4 cut(s)	92, 205, 486, 502
Sse9I	AATT	2 cut(s)	288, 777
SsiI	CCGC	1 cut(s)	655
SspMI	CTAG	3 cut(s)	216, 726, 856
StyD4I	CCNGG	4 cut(s)	145, 736, 763, 799
TaaI	ACNGT	1 cut(s)	836
TaiI	ACGT	1 cut(s)	141
TasI	AATT	2 cut(s)	288, 777
TauI	GCSGC	1 cut(s)	657
TfiI	GAWTC	1 cut(s)	466
TscAI	CASTG	2 cut(s)	373, 646
TseFI	GTSAC	2 cut(s)	259, 635
TseI	GCWGC	2 cut(s)	187, 746
Tsp45I	GTSAC	2 cut(s)	259, 635
TspDTI	ATGAA	3 cut(s)	189, 252, 510
TspGWI	ACGGA	1 cut(s)	466
TspRI	CASTG	2 cut(s)	373, 646
Van91I	CCANNNNNTGG	3 cut(s)	368, 764, 800
VpaK11BI	GGWCC	3 cut(s)	268, 697, 740
XagI	CCTNNNNNAGG	1 cut(s)	95
XbaI	TCTAGA	1 cut(s)	215
XspI	CTAG	3 cut(s)	216, 726, 856

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.