Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001998

Physical Location & Seq

Genomic Coordinates Forward (+)

2944032 .. 2945349

Gene Structure 1318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0020000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGGAGGTGATTAATGCGACTCTAGTAGTTTGCGGTTGCTTGGTGTTTGGTGCTGTGGAGATCAAAAGACTACTCCGCAGTCAACCCGGGGAGAAACTACCTGATGATATCATGGACATTATGCCCTGGAAGAAACTACCTGACGATGTCATAGAGATGATTGTGCCACACCTGAGTGTACGTGATCGTATACGATTAAGCAGTGTTTGCAAGCCTTGGAGCTCAGTTCCTATGCGCACCGACATCCCTAGTAAAGTTGGCAAGTTGGACCTGCCTGAACCAGTTCAAGGAGGGTGGTTTCAAGGATCATCAAAAGGTTGGATGATTATGATCAAGGAAAAGGATCTGGATTCTACAATGTTTCTTGTGAATCCAATTTCAGGAGCCCAGCACCAACTTCCACCTTTGAGCACGACTCCATCTTTCCAGAGCTTTGTAGACACAACCGCATGGAAACGCTATGGTGCTTCTGCTTTCTGCTATAGCGTTGTGTTATCTACCTCAGATATTAATTCAGATCAATTTATGGTTGCAGCAACTTTTGGAGATACACTGTGTTTGTGTAGACTGGGGGACAAGAGGTGGAGGTTCATCGAGGTGTTAGATGAAAACGAGGGCATTACAGATTTATTGTTTTCTTCTGGGAAGCTCTACGCCTTGCTTGTTAGTGATAATAAGACTGGCGTCATCTCAGCTCCTCGCACCTTAAAATGTGGAGATCATGTATTGGAATTGCAGCTGGTCTATGACAAAAAACCAAGAACCAATGACAGCATGGAAGAATATGCTGACTATCTAGTCCAATTACAAGGGACAGTAAGCTCACGTTTGGTAGAGTCAACAACCAAGGATGAAATACTGTTGATCCATCAAGTTCAAGATATATTTGCAAAATGGCATGACAACCATGAGGAGGTGGAGAATGTTGAAGGCAGTGATGATGACGATGACGACAATGAGGAAGATGACAACTTGGAAGGTAATGAGGAGGGAGGAGAAGAGGTTGATGATATGGGTTTTGGCATCTGTACTATTGATGAAGATGATCATGACCGTAAGCTATATTTAAGGACTAGTGATTTTTTTGCATATAAGCTTCATCCAAAGAAGAACAAGATTGCTGGTGTAAACCGCTTGGGGGATCAACTATTGTTTTTGTCAACTGAAGGTGCATTGTCCCTTCCTGCAACAGATATCAACAACATTGCATTTATTTTGCAACAAATAATCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031323 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP21_like_P Surp ubiquitin

Protein Analysis

411

Amino Acids

46.12

Weight (kDa)

4.58

Isoelectric Point (pI)

40.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	43 - 75	3.2e-06	F-box domain
F-box-like	PF12937	43 - 75	9.8e-06	F-box-like
Beta-prop_KIB1-4	PF03478	85 - 401	1e-29	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14650 AT1G14650 AT1G14650
fragaria_vesca	FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440
malus_domestica	MD13G1244100.v1.1 MD16G1250800.v1.1
prunus_persica	Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1
pyrus_communis	pycom13g21530 pycom16g21040
rosa_chinensis	RchiOBHm_Chr4g0399901
rosa_laevigata	RLG00000009234
rosa_multiflora	Rmu_co8505131.1_g000001 Rmu_sc0014676.1_g000002
rosa_roxburghii	Rroxscaffold_5G00344760
rosa_rugosa	Rorug04G0020000 Rorug04G0020100 Rorug04G0020200 Rorug04G0020200
rosa_samantha	Rh4AG097000 Rh4BG094600 Rh4CG106100
rosa_wichuraiana	Rw4G008020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	797
Acc16I	TGCGCA	1 cut(s)	236
Acc36I	ACCTGC	1 cut(s)	279
AccI	GTMKAC	3 cut(s)	190, 438, 565
AciI	CCGC	4 cut(s)	33, 76, 447, 1132
AclWI	GGATC	4 cut(s)	313, 351, 859, 1149
AcuI	CTGAAG	1 cut(s)	1185
AcyI	GRCGYC	1 cut(s)	684
AfaI	GTAC	2 cut(s)	180, 1030
AfiI	CCNNNNNNNGG	4 cut(s)	287, 380, 913, 1138
AgsI	TTSAA	4 cut(s)	287, 302, 878, 929
AhlI	ACTAGT	1 cut(s)	1073
AjnI	CCWGG	1 cut(s)	125
AleI	CACNNNNGTG	1 cut(s)	174
AluBI	AGCT	8 cut(s)	222, 432, 649, 695, 739, 822, 1060, 1096
AluI	AGCT	8 cut(s)	222, 432, 649, 695, 739, 822, 1060, 1096
Alw21I	GWGCWC	2 cut(s)	224, 413
AlwI	GGATC	4 cut(s)	313, 351, 859, 1149
Ama87I	CYCGRG	1 cut(s)	86
ApeKI	GCWGC	2 cut(s)	533, 736
AseI	ATTAAT	2 cut(s)	12, 510
Asp700I	GAANNNNTTC	1 cut(s)	282
AspLEI	GCGC	1 cut(s)	237
AspS9I	GGNCC	1 cut(s)	268
AsuC2I	CCSGG	2 cut(s)	87, 88
AsuHPI	GGTGA	1 cut(s)	19
AvaI	CYCGRG	1 cut(s)	86
AvaII	GGWCC	1 cut(s)	268
BanII	GRGCYC	2 cut(s)	224, 388
Bbv12I	GWGCWC	2 cut(s)	224, 413
BbvI	GCAGC	2 cut(s)	545, 748
BccI	CCATC	2 cut(s)	427, 876
BciT130I	CCWGG	1 cut(s)	127
BclI	TGATCA	2 cut(s)	330, 1045
BcnI	CCSGG	2 cut(s)	87, 88
BcuI	ACTAGT	1 cut(s)	1073
BfaI	CTAG	4 cut(s)	23, 249, 797, 1074
BfmI	CTRYAG	1 cut(s)	481
BfuAI	ACCTGC	1 cut(s)	279
BisI	GCNGC	2 cut(s)	534, 737
BlsI	GCNGC	2 cut(s)	535, 738
Bme1390I	CCNGG	3 cut(s)	87, 88, 127
Bme18I	GGWCC	1 cut(s)	268
BmeT110I	CYCGRG	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	268
BmiI	GGNNCC	1 cut(s)	385
BmrFI	CCNGG	3 cut(s)	87, 88, 127
BmrI	ACTGGG	1 cut(s)	578
BmsI	GCATC	1 cut(s)	1032
BmuI	ACTGGG	1 cut(s)	578
BoxI	GACNNNNGTC	1 cut(s)	683
BplI	GAGNNNNNCTC	2 cut(s)	400, 432
BpuMI	CCSGG	2 cut(s)	87, 88
BsaAI	YACGTR	1 cut(s)	182
BsaBI	GATNNNNATC	1 cut(s)	329
BsaHI	GRCGYC	1 cut(s)	684
BsaJI	CCNNGG	5 cut(s)	86, 87, 125, 215, 846
BsaXI	ACNNNNNCTCC	4 cut(s)	708, 738, 987, 1017
Bsc4I	CCNNNNNNNGG	4 cut(s)	287, 380, 913, 1138
Bse1I	ACTGG	3 cut(s)	281, 573, 685
Bse3DI	GCAATG	1 cut(s)	1203
Bse8I	GATNNNNATC	1 cut(s)	329
BseBI	CCWGG	1 cut(s)	127
BseDI	CCNNGG	5 cut(s)	86, 87, 125, 215, 846
BseGI	GGATG	4 cut(s)	243, 327, 856, 1099
BseJI	GATNNNNATC	1 cut(s)	329
BseLI	CCNNNNNNNGG	4 cut(s)	287, 380, 913, 1138
BseMI	GCAATG	1 cut(s)	1203
BseMII	CTCAG	4 cut(s)	164, 237, 516, 705
BseNI	ACTGG	3 cut(s)	281, 573, 685
BseRI	GAGGAG	4 cut(s)	687, 926, 1001, 1008
BseXI	GCAGC	2 cut(s)	545, 748
BseYI	CCCAGC	1 cut(s)	387
BsiHKAI	GWGCWC	2 cut(s)	224, 413
BsiHKCI	CYCGRG	1 cut(s)	86
BsiSI	CCGG	1 cut(s)	87
BslFI	GGGAC	3 cut(s)	587, 826, 1162
BslI	CCNNNNNNNGG	4 cut(s)	287, 380, 913, 1138
BsmFI	GGGAC	3 cut(s)	587, 826, 1162
BsoBI	CYCGRG	1 cut(s)	86
Bsp1286I	GDGCHC	3 cut(s)	224, 388, 413
BspACI	CCGC	4 cut(s)	33, 76, 447, 1132
BspCNI	CTCAG	4 cut(s)	165, 236, 515, 704
BspHI	TCATGA	1 cut(s)	1048
BspLI	GGNNCC	1 cut(s)	385
BspMI	ACCTGC	1 cut(s)	279
BspPI	GGATC	4 cut(s)	313, 351, 859, 1149
BsrDI	GCAATG	1 cut(s)	1203
BsrI	ACTGG	3 cut(s)	281, 573, 685
BssECI	CCNNGG	5 cut(s)	86, 87, 125, 215, 846
BssNAI	GTATAC	1 cut(s)	191
BssNI	GRCGYC	1 cut(s)	684
BssT1I	CCWWGG	2 cut(s)	215, 846
Bst1107I	GTATAC	1 cut(s)	191
Bst2UI	CCWGG	1 cut(s)	127
Bst4CI	ACNGT	4 cut(s)	555, 817, 861, 1055
Bst6I	CTCTTC	1 cut(s)	993
BstACI	GRCGYC	1 cut(s)	684
BstAPI	GCANNNNNTGC	1 cut(s)	207
BstBAI	YACGTR	1 cut(s)	182
BstC8I	GCNNGC	1 cut(s)	212
BstDEI	CTNAG	4 cut(s)	173, 223, 502, 691
BstF5I	GGATG	4 cut(s)	243, 327, 856, 1099
BstHHI	GCGC	1 cut(s)	237
BstMWI	GCNNNNNNNGC	1 cut(s)	207
BstNI	CCWGG	1 cut(s)	127
BstPAI	GACNNNNGTC	1 cut(s)	683
BstSCI	CCNGG	3 cut(s)	85, 86, 125
BstSFI	CTRYAG	1 cut(s)	481
BstV1I	GCAGC	2 cut(s)	545, 748
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BstZ17I	GTATAC	1 cut(s)	191
BtsCI	GGATG	4 cut(s)	243, 327, 856, 1099
BtsI	GCAGTG	2 cut(s)	208, 940
BtsIMutI	CAGTG	3 cut(s)	208, 551, 940
BveI	ACCTGC	1 cut(s)	279
Cac8I	GCNNGC	1 cut(s)	212
CciI	TCATGA	1 cut(s)	1048
CfoI	GCGC	1 cut(s)	237
Cfr13I	GGNCC	1 cut(s)	268
Cfr9I	CCCGGG	1 cut(s)	86
CseI	GACGC	1 cut(s)	673
Csp6I	GTAC	2 cut(s)	179, 1029
CspCI	CAANNNNNGTGG	2 cut(s)	275, 310
CviAII	CATG	7 cut(s)	112, 450, 722, 775, 899, 908, 1049
CviQI	GTAC	2 cut(s)	179, 1029
DdeI	CTNAG	4 cut(s)	173, 223, 502, 691
DrdI	GACNNNNNNGTC	1 cut(s)	797
DseDI	GACNNNNNNGTC	1 cut(s)	797
Eam1104I	CTCTTC	1 cut(s)	993
EarI	CTCTTC	1 cut(s)	993
Ecl136II	GAGCTC	1 cut(s)	222
Eco130I	CCWWGG	2 cut(s)	215, 846
Eco24I	GRGCYC	2 cut(s)	224, 388
Eco32I	GATATC	2 cut(s)	109, 1195
Eco47I	GGWCC	1 cut(s)	268
Eco53kI	GAGCTC	1 cut(s)	222
Eco57I	CTGAAG	1 cut(s)	1185
Eco88I	CYCGRG	1 cut(s)	86
EcoICRI	GAGCTC	1 cut(s)	222
EcoRII	CCWGG	1 cut(s)	125
EcoRV	GATATC	2 cut(s)	109, 1195
EcoT14I	CCWWGG	2 cut(s)	215, 846
EcoT38I	GRGCYC	2 cut(s)	224, 388
ErhI	CCWWGG	2 cut(s)	215, 846
FaeI	CATG	7 cut(s)	115, 453, 725, 778, 902, 911, 1052
FaqI	GGGAC	3 cut(s)	587, 826, 1162
FatI	CATG	7 cut(s)	111, 449, 721, 774, 898, 907, 1048
FbaI	TGATCA	2 cut(s)	330, 1045
FblI	GTMKAC	3 cut(s)	190, 438, 565
Fnu4HI	GCNGC	2 cut(s)	534, 737
FokI	GGATG	4 cut(s)	230, 334, 863, 1086
FriOI	GRGCYC	2 cut(s)	224, 388
Fsp4HI	GCNGC	2 cut(s)	534, 737
FspAI	RTGCGCAY	1 cut(s)	236
FspBI	CTAG	4 cut(s)	23, 249, 797, 1074
FspI	TGCGCA	1 cut(s)	236
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	2 cut(s)	534, 737
GsaI	CCCAGC	1 cut(s)	391
HapII	CCGG	1 cut(s)	87
HgaI	GACGC	1 cut(s)	673
HhaI	GCGC	1 cut(s)	237
Hin1I	GRCGYC	1 cut(s)	684
Hin1II	CATG	7 cut(s)	115, 453, 725, 778, 902, 911, 1052
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HincII	GTYRAC	3 cut(s)	83, 840, 1161
HindII	GTYRAC	3 cut(s)	83, 840, 1161
HindIII	AAGCTT	1 cut(s)	1094
HinfI	GANTC	5 cut(s)	19, 350, 370, 415, 836
HpaII	CCGG	1 cut(s)	87
HphI	GGTGA	1 cut(s)	19
Hpy166II	GTNNAC	8 cut(s)	83, 179, 191, 439, 566, 840, 1129, 1161
Hpy188I	TCNGA	2 cut(s)	505, 517
Hpy188III	TCNNGA	6 cut(s)	347, 381, 427, 878, 1049, 1233
Hpy8I	GTNNAC	8 cut(s)	83, 179, 191, 439, 566, 840, 1129, 1161
HpyAV	CCTTC	4 cut(s)	923, 971, 1160, 1190
HpyCH4III	ACNGT	4 cut(s)	555, 817, 861, 1055
HpyCH4IV	ACGT	2 cut(s)	181, 826
HpyCH4V	TGCA	9 cut(s)	210, 533, 736, 890, 1088, 1172, 1187, 1208, 1219
HpyF10VI	GCNNNNNNNGC	1 cut(s)	207
HpyF3I	CTNAG	4 cut(s)	173, 223, 502, 691
HpySE526I	ACGT	2 cut(s)	181, 826
Hsp92I	GRCGYC	1 cut(s)	684
Hsp92II	CATG	7 cut(s)	115, 453, 725, 778, 902, 911, 1052
HspAI	GCGC	1 cut(s)	235
Ksp22I	TGATCA	2 cut(s)	330, 1045
LmnI	GCTCC	3 cut(s)	219, 383, 700
Lsp1109I	GCAGC	2 cut(s)	545, 748
LweI	GCATC	1 cut(s)	1032
MaeI	CTAG	4 cut(s)	23, 249, 797, 1074
MaeII	ACGT	2 cut(s)	181, 826
MboII	GAAGA	7 cut(s)	142, 630, 791, 974, 1010, 1052, 1120
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	3 cut(s)	224, 388, 413
MluCI	AATT	5 cut(s)	375, 511, 521, 731, 803
MlyI	GAGTC	3 cut(s)	13, 409, 845
MmeI	TCCRAC	2 cut(s)	246, 299
MroXI	GAANNNNTTC	1 cut(s)	282
MseI	TTAA	5 cut(s)	12, 197, 510, 707, 1067
MslI	CAYNNNNRTG	3 cut(s)	155, 174, 596
MspA1I	CMGCKG	1 cut(s)	739
MspI	CCGG	1 cut(s)	87
MspR9I	CCNGG	3 cut(s)	87, 88, 127
MvaI	CCWGG	1 cut(s)	127
MwoI	GCNNNNNNNGC	1 cut(s)	207
NciI	CCSGG	2 cut(s)	87, 88
NlaIII	CATG	7 cut(s)	115, 453, 725, 778, 902, 911, 1052
NlaIV	GGNNCC	1 cut(s)	385
NsbI	TGCGCA	1 cut(s)	236
OliI	CACNNNNGTG	1 cut(s)	174
PagI	TCATGA	1 cut(s)	1048
PdmI	GAANNNNTTC	1 cut(s)	282
PfeI	GAWTC	2 cut(s)	350, 370
PflFI	GACNNNGTC	1 cut(s)	146
PkrI	GCNGC	2 cut(s)	535, 738
PleI	GAGTC	3 cut(s)	13, 409, 844
PpsI	GAGTC	3 cut(s)	13, 409, 844
Ppu21I	YACGTR	1 cut(s)	182
PshAI	GACNNNNGTC	1 cut(s)	683
PshBI	ATTAAT	2 cut(s)	12, 510
Psp124BI	GAGCTC	1 cut(s)	224
Psp6I	CCWGG	1 cut(s)	125
PspFI	CCCAGC	1 cut(s)	387
PspGI	CCWGG	1 cut(s)	125
PspN4I	GGNNCC	1 cut(s)	385
PspPI	GGNCC	1 cut(s)	268
PsuI	RGATCY	1 cut(s)	343
PsyI	GACNNNGTC	1 cut(s)	146
PvuII	CAGCTG	1 cut(s)	739
RsaI	GTAC	2 cut(s)	180, 1030
RsaNI	GTAC	2 cut(s)	179, 1029
RseI	CAYNNNNRTG	3 cut(s)	155, 174, 596
SacI	GAGCTC	1 cut(s)	224
SaqAI	TTAA	5 cut(s)	12, 197, 510, 707, 1067
SatI	GCNGC	2 cut(s)	534, 737
Sau96I	GGNCC	1 cut(s)	268
SchI	GAGTC	3 cut(s)	13, 409, 845
ScrFI	CCNGG	3 cut(s)	87, 88, 127
SduI	GDGCHC	3 cut(s)	224, 388, 413
SfaNI	GCATC	1 cut(s)	1032
SfcI	CTRYAG	1 cut(s)	481
SinI	GGWCC	1 cut(s)	268
SmaI	CCCGGG	1 cut(s)	88
SmiMI	CAYNNNNRTG	3 cut(s)	155, 174, 596
SpeI	ACTAGT	1 cut(s)	1073
Sse9I	AATT	5 cut(s)	375, 511, 521, 731, 803
SsiI	CCGC	4 cut(s)	33, 76, 447, 1132
SspMI	CTAG	4 cut(s)	23, 249, 797, 1074
SstI	GAGCTC	1 cut(s)	224
StyD4I	CCNGG	3 cut(s)	85, 86, 125
StyI	CCWWGG	2 cut(s)	215, 846
TaaI	ACNGT	4 cut(s)	555, 817, 861, 1055
TaiI	ACGT	2 cut(s)	184, 829
TaqI	TCGA	1 cut(s)	594
TasI	AATT	5 cut(s)	375, 511, 521, 731, 803
TatI	WGTACW	1 cut(s)	1028
TfiI	GAWTC	2 cut(s)	350, 370
Tru1I	TTAA	5 cut(s)	12, 197, 510, 707, 1067
Tru9I	TTAA	5 cut(s)	12, 197, 510, 707, 1067
TscAI	CASTG	3 cut(s)	208, 558, 940
TseI	GCWGC	2 cut(s)	533, 736
TspDTI	ATGAA	5 cut(s)	580, 621, 867, 1053, 1088
TspMI	CCCGGG	1 cut(s)	86
TspRI	CASTG	3 cut(s)	208, 558, 940
Tth111I	GACNNNGTC	1 cut(s)	146
VpaK11BI	GGWCC	1 cut(s)	268
VspI	ATTAAT	2 cut(s)	12, 510
XcmI	CCANNNNNNNNNTGG	1 cut(s)	772
XmaI	CCCGGG	1 cut(s)	86
XmiI	GTMKAC	3 cut(s)	190, 438, 565
XmnI	GAANNNNTTC	1 cut(s)	282
XspI	CTAG	4 cut(s)	23, 249, 797, 1074

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.