Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001998

Physical Location & Seq

Genomic Coordinates Reverse (-)

49505461 .. 49508878

Gene Structure 3418 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009234

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2670 bp

ATGATCGGTTCCATATTACCCTTGCCAGCTCCTCCTACTGATGGAAACCTGGGGCCTTTACCGCTAGCCCAGGTCACTGAAGTGAAGAATGAAGAGAATGAATTGAACGAGGAGCTGAACAGAGCCAACTCGGTGCCTGTCTCAGTTGCTACGCATACTAGGACGATTGGTATCATACATCCTCCTCCCGATATCAGAAACATTGTTGACAAAACTTCCCAGTTTGTCGCAAAGAATGGACCAGAATTTGAGAAGAGGATTATAGCTAGTAATAATGGAAATCCAAAGTTTAACTTTTTGAGTTCCTCGGATCCGTACCATGCCTATTATCAGCACCGGTTGTCTGAATTTCGTGCCCAGGCTCAGTCTTCTGGCCAGCAACCTTCTTTGGAGCCTGATGATTCTGCTGCACCTGAATCAGGCCTGCCAGCTCCAGCTGCTGATGGTGAAGCAGAAACAACTAAGCCTGATCCCTCTGCCCAGTTTAGACCGGTACGAAAAGTTCTTGAACCCCCAGAAGCCGAACAGTATACTGTTAGGCTTCCAGAAGGGATTACTGGAGAAGAATTGGATATTATTAAGCTCACAGCCCAGTTTGTTGCTCGAAATGGGAAATCATTTTTGACAGGATTGACAAGCAGAGAGATCAATAACCCCCAGTTCCATTTTCTGAAGCCTACCCATAGTATGTTCATGTTTTTCACCTCTCTGGCTGATGCATATTCGAAGGTCTTGATGCCTCCAAAAGGTTTGACAGAGAAGCTTAAGAAAAGTGTTGCAGACATGACAACTGTGCTTGAACGCTGTGTGCATCGGCTGGAGTGGGAGCGATCTCAAGAGCAGGCAAGGCAGAAGGCTGAAGATGAGATAGAGCAGGAAAGGATACAAATGGCTATGATTGATTGGCATGATTTTGTTGTGGTTGAAACAATAGACTTTGCAGATGATGAGGATGAGGATTTACCTCCTCCAATGACCCTTGAGGAGGTTATAAGAAGGAGCAAGGTTACAGATATGGAAGAAGATATTATTGAGCCTGGAAAGGAGATGGAAATGGAAATGGATGAAGAAGAAATGCAGCTTGTTGAAGAGGGCATGAGGCAAGCAAGACTTGAAGAGAACAATGAACAGAAGAATGAGAATAAGGTAACAGATGATCCCGAACCCCCAATGAGAATTGTGAAGAACTGGAAGAGACCTGAGGAGAGGATTCCTGCTGAAAGAGATCCAACAAAGGTTGTCATTTCCCCGATTACTGGGGAGCTTATCCCTATCAATGAGATGTCTGAACATATGAGAATTTCTCTCATTGATCCAAAATACAAAGAGCAAAAAGAAAGGATGTTTGCGAAAATTAGGGAGACTACTCTTGCTCAGGACGATGAAATCTCAAGGAACATTGTGGGCCTTGCACGAACCCGTCCGGATATTTTTGGTACTACAGAGGAAGAAGTTTCTAATGCTGTCAAGGCTGAGATCGAGAAAAAGAAAGATGAGCAACCAAAGCAGGTCATATGGGATGGTCACACTGGAAGCATTGGCCGTACAGCAAATCAGGCCATGTCACAGAATATCAATGGAGAGGATCAGAATGATGTTAACAATCTTCCTGGTCCAGCAGCGCCTCCTCCAAGACCTGGTGTGCCTTCAATTCCTCGTCCTCTTCCCCCACCACCTGGTCTTGCCTTGAATCTTCCTCGTGTTCCTCCAAACACAGTTCAGTATTCTGCTCCATCTAGTGGTGGCCTCCCTGTACCTCAACTGAGGCCGCCAGTCCAATATTCATCAGTTCGACCACCTGGACCTCCAATGCCCATGAGTTCTGGACAGCAGTCACTTTTGGTGAATCGACCACCACCTATGCATCCATCAATGTCTATGAATGCTCCTAGTAATCCTGTACCTCCTCCACCTGGTTCTCAGTTTACACCTATGCAAGCTGCCCGGCCTTACATGCAAATGATGCCTCCACCACCTTCAATGCAAATGATGCCTCCACCACCTATGCCTCATGGAATGATGCCTCCGCCACCTCCACCTGAGGAAGCTCCTCCACCGCTCCCAGAGGAACCTGAGCCCAAGCGGCAGAAGCTTGATGACTCCATGCTTATTGCAGAAGATAAATTTCTGGCACAGCATCCGGGGCCTGTTCGTCTCACCGTATCTGTTCCCAATGTTGATGAAGGCAATCTCAAAGGACAACTTTTGGAGATCACAGTTCAGTCTTTATCTGAAACTGTTGGAAGTCTGAAAGAAAAAATTTCTGGGGAGATCCAGCTTCCGGCAAACAAACAGAAATTGAGTGGAAAACCTGGCTTTCTCAAGGACAATTTGTCTCTTGCATATTACAATGTTGGAGCAGGAGAAACGCTTGCTCTTTCATTGAGAGAACGTGGTGGTAGAAAGCGATCTGGTGTTTCGGCGAATGTCTATTGGACAAAGGGAAGTGTCGGTTCCTTTTGCTTAGCCGGAGCAAGTGATTTGCATATATATCTAATTATTGCTCCTTTTCATAATGCAGTTTTTTTCTATGGAAAGATTGGGCTATGGTCGCAACGAGTTAGATGTGTGCTCTTCATGCATCTAAACCAGCCTGGACTGGGACCACTGGGTTTGATTGCAACATCATGTTTGAGGAACCAGCAGGGTTTTATATCTAATTTTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031323 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP21_like_P Surp ubiquitin

Protein Analysis

890

Amino Acids

98.6

Weight (kDa)

5.24

Isoelectric Point (pI)

58.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Surp	PF01805	66 - 117	1.3e-21	Surp module
Surp	PF01805	190 - 241	2.2e-17	Surp module
PRP21_like_P	PF12230	260 - 472	1.7e-56	Pre-mRNA splicing factor PRP21 like protein
ubiquitin	PF00240	732 - 798	8.5e-08	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14650 AT1G14650 AT1G14650
fragaria_vesca	FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440 FvH4_4g07440
malus_domestica	MD13G1244100.v1.1 MD16G1250800.v1.1
prunus_persica	Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1 Prupe.1G077400_v2.0.a1
pyrus_communis	pycom13g21530 pycom16g21040
rosa_chinensis	RchiOBHm_Chr4g0399901
rosa_laevigata	RLG00000009234
rosa_multiflora	Rmu_co8505131.1_g000001 Rmu_sc0014676.1_g000002
rosa_roxburghii	Rroxscaffold_5G00344760
rosa_rugosa	Rorug04G0020000 Rorug04G0020100 Rorug04G0020200 Rorug04G0020200
rosa_samantha	Rh4AG097000 Rh4BG094600 Rh4CG106100
rosa_wichuraiana	Rw4G008020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	992
Acc36I	ACCTGC	1 cut(s)	1498
AccB1I	GGYRCC	1 cut(s)	133
AccB7I	CCANNNNNTGG	3 cut(s)	1637, 1676, 1739
AccBSI	CCGCTC	1 cut(s)	2059
AccI	GTMKAC	1 cut(s)	530
AccIII	TCCGGA	1 cut(s)	1423
AciI	CCGC	5 cut(s)	62, 1769, 2027, 2057, 2083
AclWI	GGATC	8 cut(s)	305, 318, 464, 1151, 1220, 1307, 1593, 2266
AcoI	YGGCCR	2 cut(s)	373, 1540
AcsI	RAATTY	5 cut(s)	245, 347, 1299, 2123, 2259
AcuI	CTGAAG	3 cut(s)	99, 692, 879
AfaI	GTAC	6 cut(s)	317, 495, 1438, 1546, 1755, 1902
AflII	CTTAAG	1 cut(s)	764
AgeI	ACCGGT	2 cut(s)	336, 490
AgsI	TTSAA	9 cut(s)	106, 509, 800, 926, 1088, 1115, 1650, 1690, 1980
AhdI	GACNNNNNGTC	1 cut(s)	2332
AleI	CACNNNNGTG	1 cut(s)	80
Alw21I	GWGCWC	1 cut(s)	2574
Alw26I	GTCTC	5 cut(s)	145, 1189, 1355, 2159, 2340
AlwI	GGATC	8 cut(s)	305, 318, 464, 1151, 1220, 1307, 1593, 2266
AlwNI	CAGNNNCTG	1 cut(s)	440
Aor13HI	TCCGGA	1 cut(s)	1423
ApeKI	GCWGC	5 cut(s)	407, 437, 1078, 1619, 1940
ApoI	RAATTY	5 cut(s)	245, 347, 1299, 2123, 2259
AsiGI	ACCGGT	2 cut(s)	336, 490
AspLEI	GCGC	1 cut(s)	1624
AspS9I	GGNCC	7 cut(s)	53, 239, 1405, 1613, 1802, 2144, 2603
AsuC2I	CCSGG	2 cut(s)	1945, 2142
AsuHPI	GGTGA	4 cut(s)	458, 694, 1855, 2149
AsuII	TTCGAA	1 cut(s)	725
AsuNHI	GCTAGC	1 cut(s)	64
AvaII	GGWCC	4 cut(s)	239, 1613, 1802, 2603
AxyI	CCTNAGG	2 cut(s)	1200, 2040
BaeGI	GKGCMC	1 cut(s)	358
BalI	TGGCCA	1 cut(s)	375
BamHI	GGATCC	1 cut(s)	310
BanI	GGYRCC	1 cut(s)	133
BanII	GRGCYC	1 cut(s)	2079
BauI	CACGAG	1 cut(s)	1698
BbsI	GAAGAC	1 cut(s)	360
Bbv12I	GWGCWC	1 cut(s)	2574
BbvI	GCAGC	5 cut(s)	394, 424, 1090, 1631, 1927
BccI	CCATC	6 cut(s)	35, 437, 1042, 1514, 1741, 1876
BceAI	ACGGC	1 cut(s)	1527
BciVI	GTATCC	1 cut(s)	876
BcnI	CCSGG	2 cut(s)	1945, 2142
BcoDI	GTCTC	5 cut(s)	145, 1189, 1355, 2159, 2340
BfaI	CTAG	5 cut(s)	65, 159, 267, 1737, 1890
BfmI	CTRYAG	1 cut(s)	1440
BfoI	RGCGCY	1 cut(s)	1625
BfrI	CTTAAG	1 cut(s)	764
BfuAI	ACCTGC	1 cut(s)	1498
BfuI	GTATCC	1 cut(s)	876
BglI	GCCNNNNNGGC	1 cut(s)	2083
BisI	GCNGC	7 cut(s)	408, 438, 1079, 1620, 1769, 1941, 2084
BlpI	GCTNAGC	1 cut(s)	2464
BlsI	GCNGC	7 cut(s)	409, 439, 1080, 1621, 1770, 1942, 2085
Bme18I	GGWCC	4 cut(s)	239, 1613, 1802, 2603
BmeRI	GACNNNNNGTC	1 cut(s)	2332
BmgT120I	GGNCC	7 cut(s)	53, 239, 1405, 1613, 1802, 2144, 2603
BmrI	ACTGGG	7 cut(s)	214, 475, 586, 652, 1266, 2609, 2618
BmsI	GCATC	9 cut(s)	706, 726, 820, 1873, 1953, 1980, 2010, 2146, 2590
BmtI	GCTAGC	1 cut(s)	68
BmuI	ACTGGG	7 cut(s)	214, 475, 586, 652, 1266, 2609, 2618
BoxI	GACNNNNGTC	1 cut(s)	1831
BpiI	GAAGAC	1 cut(s)	360
BplI	GAGNNNNNCTC	2 cut(s)	1288, 1320
BpmI	CTGGAG	3 cut(s)	417, 579, 839
Bpu10I	CCTNAGC	2 cut(s)	1374, 2073
Bpu1102I	GCTNAGC	1 cut(s)	2464
Bpu14I	TTCGAA	1 cut(s)	725
BpuEI	CTTGAG	4 cut(s)	819, 1001, 1375, 2306
BpuMI	CCSGG	2 cut(s)	1945, 2142
BsaBI	GATNNNNATC	1 cut(s)	170
BsaI	GGTCTC	1 cut(s)	1189
BsaJI	CCNNGG	5 cut(s)	49, 69, 306, 357, 2141
BsaWI	WCCGGW	3 cut(s)	336, 490, 1423
Bse118I	RCCGGY	2 cut(s)	336, 490
Bse21I	CCTNAGG	2 cut(s)	1200, 2040
Bse8I	GATNNNNATC	1 cut(s)	170
BseAI	TCCGGA	1 cut(s)	1423
BseDI	CCNNGG	5 cut(s)	49, 69, 306, 357, 2141
BseGI	GGATG	7 cut(s)	178, 958, 1069, 1347, 1525, 1864, 2137
BseJI	GATNNNNATC	1 cut(s)	170
BseMII	CTCAG	9 cut(s)	156, 377, 1191, 1388, 1464, 1754, 1934, 2031, 2064
BseRI	GAGGAG	9 cut(s)	21, 125, 174, 957, 998, 1217, 1617, 1896, 2040
BseSI	GKGCMC	1 cut(s)	358
BseXI	GCAGC	5 cut(s)	394, 424, 1090, 1631, 1927
BsgI	GTGCAG	1 cut(s)	393
BshNI	GGYRCC	1 cut(s)	133
BshTI	ACCGGT	2 cut(s)	336, 490
BsiHKAI	GWGCWC	1 cut(s)	2574
BsiSI	CCGG	7 cut(s)	337, 491, 1424, 1945, 2141, 2282, 2469
BslFI	GGGAC	1 cut(s)	2616
BsmAI	GTCTC	5 cut(s)	145, 1189, 1355, 2159, 2340
BsmBI	CGTCTC	1 cut(s)	2159
BsmFI	GGGAC	1 cut(s)	2616
BsmI	GAATGC	1 cut(s)	1888
Bso31I	GGTCTC	1 cut(s)	1189
Bsp119I	TTCGAA	1 cut(s)	725
Bsp1286I	GDGCHC	3 cut(s)	358, 2079, 2574
Bsp13I	TCCGGA	1 cut(s)	1423
Bsp1720I	GCTNAGC	1 cut(s)	2464
BspACI	CCGC	5 cut(s)	62, 1769, 2027, 2057, 2083
BspCNI	CTCAG	9 cut(s)	155, 376, 1192, 1387, 1465, 1755, 1933, 2032, 2065
BspEI	TCCGGA	1 cut(s)	1423
BspMI	ACCTGC	1 cut(s)	1498
BspOI	GCTAGC	1 cut(s)	68
BspPI	GGATC	8 cut(s)	305, 318, 464, 1151, 1220, 1307, 1593, 2266
BspQI	GCTCTTC	1 cut(s)	2579
BspT104I	TTCGAA	1 cut(s)	725
BspT107I	GGYRCC	1 cut(s)	133
BspTI	CTTAAG	1 cut(s)	764
BspTNI	GGTCTC	1 cut(s)	1189
BsrBI	CCGCTC	1 cut(s)	2059
BsrFI	RCCGGY	2 cut(s)	336, 490
BssAI	RCCGGY	2 cut(s)	336, 490
BssECI	CCNNGG	5 cut(s)	49, 69, 306, 357, 2141
BssNAI	GTATAC	1 cut(s)	531
BssSI	CACGAG	1 cut(s)	1698
Bst1107I	GTATAC	1 cut(s)	531
Bst2BI	CACGAG	1 cut(s)	1698
Bst4CI	ACNGT	7 cut(s)	528, 535, 793, 1717, 2161, 2218, 2239
Bst6I	CTCTTC	7 cut(s)	87, 248, 1083, 1110, 1187, 1668, 2579
BstAFI	CTTAAG	1 cut(s)	764
BstAPI	GCANNNNNTGC	2 cut(s)	1963, 1990
BstBI	TTCGAA	1 cut(s)	725
BstC8I	GCNNGC	9 cut(s)	27, 66, 377, 425, 429, 843, 1104, 1938, 2373
BstENI	CCTNNNNNAGG	3 cut(s)	417, 744, 983
BstF5I	GGATG	7 cut(s)	178, 958, 1069, 1347, 1525, 1864, 2137
BstH2I	RGCGCY	1 cut(s)	1625
BstHHI	GCGC	1 cut(s)	1624
BstMAI	GTCTC	5 cut(s)	145, 1189, 1355, 2159, 2340
BstNSI	RCATGY	1 cut(s)	1957
BstPAI	GACNNNNGTC	1 cut(s)	1831
BstSFI	CTRYAG	1 cut(s)	1440
BstSLI	GKGCMC	1 cut(s)	358
BstV1I	GCAGC	5 cut(s)	394, 424, 1090, 1631, 1927
BstV2I	GAAGAC	1 cut(s)	360
BstX2I	RGATCY	3 cut(s)	310, 1225, 2271
BstYI	RGATCY	3 cut(s)	310, 1225, 2271
BstZ17I	GTATAC	1 cut(s)	531
Bsu36I	CCTNAGG	2 cut(s)	1200, 2040
BsuI	GTATCC	1 cut(s)	876
BtsCI	GGATG	7 cut(s)	178, 958, 1069, 1347, 1525, 1864, 2137
BtsIMutI	CAGTG	3 cut(s)	75, 1527, 2606
BveI	ACCTGC	1 cut(s)	1498
Cac8I	GCNNGC	9 cut(s)	27, 66, 377, 425, 429, 843, 1104, 1938, 2373
CaiI	CAGNNNCTG	1 cut(s)	440
CfoI	GCGC	1 cut(s)	1624
Cfr10I	RCCGGY	2 cut(s)	336, 490
Cfr13I	GGNCC	7 cut(s)	53, 239, 1405, 1613, 1802, 2144, 2603
CsiI	ACCWGGT	3 cut(s)	1636, 1675, 1912
Csp6I	GTAC	6 cut(s)	316, 494, 1437, 1545, 1754, 1901
CspAI	ACCGGT	2 cut(s)	336, 490
CspCI	CAANNNNNGTGG	2 cut(s)	2595, 2630
CviQI	GTAC	6 cut(s)	316, 494, 1437, 1545, 1754, 1901
DriI	GACNNNNNGTC	1 cut(s)	2332
EaeI	YGGCCR	2 cut(s)	373, 1540
Eam1104I	CTCTTC	7 cut(s)	87, 248, 1083, 1110, 1187, 1668, 2579
Eam1105I	GACNNNNNGTC	1 cut(s)	2332
EarI	CTCTTC	7 cut(s)	87, 248, 1083, 1110, 1187, 1668, 2579
EciI	GGCGGA	1 cut(s)	2016
Eco147I	AGGCCT	1 cut(s)	423
Eco24I	GRGCYC	1 cut(s)	2079
Eco31I	GGTCTC	1 cut(s)	1189
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	4 cut(s)	239, 1613, 1802, 2603
Eco57I	CTGAAG	3 cut(s)	99, 692, 879
Eco81I	CCTNAGG	2 cut(s)	1200, 2040
EcoNI	CCTNNNNNAGG	3 cut(s)	417, 744, 983
EcoO109I	RGGNCCY	2 cut(s)	53, 2144
EcoRV	GATATC	1 cut(s)	193
EcoT22I	ATGCAT	3 cut(s)	721, 1866, 2583
EcoT38I	GRGCYC	1 cut(s)	2079
Esp3I	CGTCTC	1 cut(s)	2159
FalI	AAGNNNNNCTT	6 cut(s)	278, 310, 1095, 1127, 2187, 2219
FaqI	GGGAC	1 cut(s)	2616
FauNDI	CATATG	2 cut(s)	1293, 1514
FblI	GTMKAC	1 cut(s)	530
Fnu4HI	GCNGC	7 cut(s)	408, 438, 1079, 1620, 1769, 1941, 2084
FokI	GGATG	7 cut(s)	165, 965, 1076, 1354, 1532, 1851, 2124
FriOI	GRGCYC	1 cut(s)	2079
Fsp4HI	GCNGC	7 cut(s)	408, 438, 1079, 1620, 1769, 1941, 2084
FspBI	CTAG	5 cut(s)	65, 159, 267, 1737, 1890
GlaI	GCGC	1 cut(s)	1623
GluI	GCNGC	7 cut(s)	408, 438, 1079, 1620, 1769, 1941, 2084
GsuI	CTGGAG	3 cut(s)	417, 579, 839
HaeII	RGCGCY	1 cut(s)	1625
HapII	CCGG	7 cut(s)	337, 491, 1424, 1945, 2141, 2282, 2469
HhaI	GCGC	1 cut(s)	1624
Hin6I	GCGC	1 cut(s)	1622
HinP1I	GCGC	1 cut(s)	1622
HincII	GTYRAC	2 cut(s)	208, 1600
HindII	GTYRAC	2 cut(s)	208, 1600
HindIII	AAGCTT	2 cut(s)	761, 2090
HinfI	GANTC	6 cut(s)	401, 416, 1210, 1690, 1846, 2099
HpaI	GTTAAC	1 cut(s)	1600
HpaII	CCGG	7 cut(s)	337, 491, 1424, 1945, 2141, 2282, 2469
HphI	GGTGA	4 cut(s)	458, 694, 1855, 2149
Hpy166II	GTNNAC	4 cut(s)	208, 531, 1600, 1926
Hpy188I	TCNGA	8 cut(s)	197, 310, 346, 672, 1288, 1590, 2233, 2250
Hpy8I	GTNNAC	4 cut(s)	208, 531, 1600, 1926
HpyAV	CCTTC	8 cut(s)	393, 542, 721, 847, 990, 1656, 1986, 2177
HpyCH4III	ACNGT	7 cut(s)	528, 535, 793, 1717, 2161, 2218, 2239
HpyCH4IV	ACGT	1 cut(s)	2392
HpySE526I	ACGT	1 cut(s)	2392
HspAI	GCGC	1 cut(s)	1622
Kpn2I	TCCGGA	1 cut(s)	1423
KspAI	GTTAAC	1 cut(s)	1600
LguI	GCTCTTC	1 cut(s)	2579
Lsp1109I	GCAGC	5 cut(s)	394, 424, 1090, 1631, 1927
LweI	GCATC	9 cut(s)	706, 726, 820, 1873, 1953, 1980, 2010, 2146, 2590
MabI	ACCWGGT	3 cut(s)	1636, 1675, 1912
MaeI	CTAG	5 cut(s)	65, 159, 267, 1737, 1890
MaeII	ACGT	1 cut(s)	2392
MaeIII	GTNAC	6 cut(s)	73, 1006, 1147, 1523, 1563, 1833
MbiI	CCGCTC	1 cut(s)	2059
MflI	RGATCY	3 cut(s)	310, 1225, 2271
MhlI	GDGCHC	3 cut(s)	358, 2079, 2574
MlsI	TGGCCA	1 cut(s)	375
MluNI	TGGCCA	1 cut(s)	375
MlyI	GAGTC	1 cut(s)	2093
MmeI	TCCRAC	3 cut(s)	1253, 2221, 2335
Mox20I	TGGCCA	1 cut(s)	375
Mph1103I	ATGCAT	3 cut(s)	721, 1866, 2583
MroI	TCCGGA	1 cut(s)	1423
MscI	TGGCCA	1 cut(s)	375
MseI	TTAA	4 cut(s)	291, 579, 765, 1599
MslI	CAYNNNNRTG	2 cut(s)	80, 1958
Msp20I	TGGCCA	1 cut(s)	375
MspA1I	CMGCKG	1 cut(s)	437
MspCI	CTTAAG	1 cut(s)	764
MspI	CCGG	7 cut(s)	337, 491, 1424, 1945, 2141, 2282, 2469
Mva1269I	GAATGC	1 cut(s)	1888
NciI	CCSGG	2 cut(s)	1945, 2142
NdeI	CATATG	2 cut(s)	1293, 1514
NheI	GCTAGC	1 cut(s)	64
NmuCI	GTSAC	4 cut(s)	73, 1523, 1563, 1833
NsiI	ATGCAT	3 cut(s)	721, 1866, 2583
NspI	RCATGY	1 cut(s)	1957
NspV	TTCGAA	1 cut(s)	725
OliI	CACNNNNGTG	1 cut(s)	80
PceI	AGGCCT	1 cut(s)	423
PciSI	GCTCTTC	1 cut(s)	2579
PctI	GAATGC	1 cut(s)	1888
PfeI	GAWTC	5 cut(s)	401, 416, 1210, 1690, 1846
PflMI	CCANNNNNTGG	3 cut(s)	1637, 1676, 1739
PinAI	ACCGGT	2 cut(s)	336, 490
PkrI	GCNGC	7 cut(s)	409, 439, 1080, 1621, 1770, 1942, 2085
PleI	GAGTC	1 cut(s)	2093
PpsI	GAGTC	1 cut(s)	2093
PshAI	GACNNNNGTC	1 cut(s)	1831
PsiI	TTATAA	1 cut(s)	992
PspPI	GGNCC	7 cut(s)	53, 239, 1405, 1613, 1802, 2144, 2603
PsrI	GAACNNNNNNTAC	2 cut(s)	486, 518
PstNI	CAGNNNCTG	1 cut(s)	440
PsuI	RGATCY	3 cut(s)	310, 1225, 2271
PvuII	CAGCTG	1 cut(s)	437
RsaI	GTAC	6 cut(s)	317, 495, 1438, 1546, 1755, 1902
RsaNI	GTAC	6 cut(s)	316, 494, 1437, 1545, 1754, 1901
RseI	CAYNNNNRTG	2 cut(s)	80, 1958
SapI	GCTCTTC	1 cut(s)	2579
SaqAI	TTAA	4 cut(s)	291, 579, 765, 1599
SatI	GCNGC	7 cut(s)	408, 438, 1079, 1620, 1769, 1941, 2084
Sau96I	GGNCC	7 cut(s)	53, 239, 1405, 1613, 1802, 2144, 2603
SchI	GAGTC	1 cut(s)	2093
SduI	GDGCHC	3 cut(s)	358, 2079, 2574
SexAI	ACCWGGT	3 cut(s)	1636, 1675, 1912
SfaNI	GCATC	9 cut(s)	706, 726, 820, 1873, 1953, 1980, 2010, 2146, 2590
SfcI	CTRYAG	1 cut(s)	1440
SfuI	TTCGAA	1 cut(s)	725
SinI	GGWCC	4 cut(s)	239, 1613, 1802, 2603
SmiMI	CAYNNNNRTG	2 cut(s)	80, 1958
SmlI	CTYRAG	5 cut(s)	764, 834, 980, 1390, 2321
SmoI	CTYRAG	5 cut(s)	764, 834, 980, 1390, 2321
SseBI	AGGCCT	1 cut(s)	423
SsiI	CCGC	5 cut(s)	62, 1769, 2027, 2057, 2083
SspI	AATATT	1 cut(s)	1781
SspMI	CTAG	5 cut(s)	65, 159, 267, 1737, 1890
StuI	AGGCCT	1 cut(s)	423
TaaI	ACNGT	7 cut(s)	528, 535, 793, 1717, 2161, 2218, 2239
TaiI	ACGT	1 cut(s)	2395
TaqI	TCGA	5 cut(s)	604, 725, 1479, 1792, 1849
TauI	GCSGC	2 cut(s)	1771, 2086
TfiI	GAWTC	5 cut(s)	401, 416, 1210, 1690, 1846
Tru1I	TTAA	4 cut(s)	291, 579, 765, 1599
Tru9I	TTAA	4 cut(s)	291, 579, 765, 1599
TscAI	CASTG	3 cut(s)	82, 1534, 2613
TseFI	GTSAC	4 cut(s)	73, 1523, 1563, 1833
TseI	GCWGC	5 cut(s)	407, 437, 1078, 1619, 1940
Tsp45I	GTSAC	4 cut(s)	73, 1523, 1563, 1833
TspGWI	ACGGA	1 cut(s)	303
TspRI	CASTG	3 cut(s)	82, 1534, 2613
Van91I	CCANNNNNTGG	3 cut(s)	1637, 1676, 1739
Vha464I	CTTAAG	1 cut(s)	764
VpaK11BI	GGWCC	4 cut(s)	239, 1613, 1802, 2603
XagI	CCTNNNNNAGG	3 cut(s)	417, 744, 983
XapI	RAATTY	5 cut(s)	245, 347, 1299, 2123, 2259
XceI	RCATGY	1 cut(s)	1957
XmiI	GTMKAC	1 cut(s)	530
XspI	CTAG	5 cut(s)	65, 159, 267, 1737, 1890
Zsp2I	ATGCAT	3 cut(s)	721, 1866, 2583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.