Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0017727

Physical Location & Seq

Genomic Coordinates Reverse (-)

33301255 .. 33301734

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1262400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGAGGAAGATGAGAAGGTGGTCAAGTCCGTCGTGGCGGGAACCATCCCTTCGTACTCTCTGGAGTCAAAGCTCGGAGATTGCAAGAGGGTAGTAGCTATCAGTCGCGAGGTGCTGCAGAGGATTACAGGGAAGTCTCTCACTGGTCTGCCATTGGAGGGTTTCGATTACGAGTCAATTTTGGGTCAGTGCTGCGAGATGCCAGTTAGGTACGTTCAGATTCCAGTTGGGATTGCCAGGCCTCTTATGCTCAACGGTAGAGAGTTCTATGTGCCAATAACCACCACCGAAGGTTGCTTGGTTGCTGGCACCAACCGTGGCTGCAAAGCTATCAACTTGTCCGACAGAGCCACTAGTGTGTTGCTGAGAGACGGGATGACCAGAGAGCCTTGTGTGAGGTTCAACTCTACTAAGAGAGCTGCCGAATTGAAGTTCTACTTGGAAGACCCCAAAGAAGAACATAAACAAGGTTTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004420 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0009058 GO:0009526 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016104 GO:0016114 GO:0016125 GO:0016126 GO:0016491 GO:0016614 GO:0016616 GO:0031090 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0031984 GO:0042170 GO:0042175 GO:0042282 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044435 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098588 GO:0098805 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04152 ko04976 map00900 map01100 map01110 map01130 map04152 map04976

Pfam Domains

Protein Families

HMG-CoA_red

Protein Analysis

160

Amino Acids

17.7

Weight (kDa)

7.57

Isoelectric Point (pI)

38.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMG-CoA_red	PF00368	33 - 152	2.2e-32	Hydroxymethylglutaryl-coenzyme A reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017727)

Species	Orthologous Gene IDs
malus_domestica	MD13G1262400.v1.1
rosa_laevigata	RLG00000016669 RLG00000018668
rosa_multiflora	Rmu_sc0001084.1_g000005 Rmu_sc0002712.1_g000014 Rmu_sc0003669.1_g000029 Rmu_sc0013561.1_g000001 Rmu_sc0032262.1_g000001
rosa_roxburghii	Rroxscaffold_4G00329150 Rroxscaffold_7G00176570
rosa_samantha	Rh3BG322900 Rh4DG243400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	308
AccII	CGCG	1 cut(s)	108
AciI	CCGC	1 cut(s)	38
AfaI	GTAC	2 cut(s)	56, 212
AfiI	CCNNNNNNNGG	1 cut(s)	158
AgsI	TTSAA	2 cut(s)	403, 430
AhlI	ACTAGT	1 cut(s)	353
AjnI	CCWGG	1 cut(s)	236
AjuI	GAANNNNNNNTTGG	2 cut(s)	422, 454
AleI	CACNNNNGTG	1 cut(s)	356
AluBI	AGCT	4 cut(s)	73, 98, 329, 419
AluI	AGCT	4 cut(s)	73, 98, 329, 419
Alw26I	GTCTC	2 cut(s)	141, 363
AoxI	GGCC	1 cut(s)	239
ApeKI	GCWGC	4 cut(s)	115, 192, 321, 419
BanI	GGYRCC	1 cut(s)	308
BbsI	GAAGAC	1 cut(s)	450
BbvI	GCAGC	4 cut(s)	102, 179, 308, 406
BccI	CCATC	1 cut(s)	53
BciT130I	CCWGG	1 cut(s)	238
BcoDI	GTCTC	2 cut(s)	141, 363
BcuI	ACTAGT	1 cut(s)	353
BfaI	CTAG	1 cut(s)	354
BfmI	CTRYAG	1 cut(s)	116
BisI	GCNGC	4 cut(s)	116, 193, 322, 420
BlsI	GCNGC	4 cut(s)	117, 194, 323, 421
Bme1390I	CCNGG	1 cut(s)	238
BmiI	GGNNCC	2 cut(s)	43, 310
BmrFI	CCNGG	1 cut(s)	238
BmsI	GCATC	1 cut(s)	189
BpiI	GAAGAC	1 cut(s)	450
BpmI	CTGGAG	1 cut(s)	83
BsaJI	CCNNGG	1 cut(s)	316
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
Bse1I	ACTGG	3 cut(s)	148, 203, 224
BseBI	CCWGG	1 cut(s)	238
BseDI	CCNNGG	1 cut(s)	316
BseGI	GGATG	2 cut(s)	45, 381
BseLI	CCNNNNNNNGG	1 cut(s)	158
BseMII	CTCAG	1 cut(s)	356
BseNI	ACTGG	3 cut(s)	148, 203, 224
BseXI	GCAGC	4 cut(s)	102, 179, 308, 406
Bsh1236I	CGCG	1 cut(s)	108
BshFI	GGCC	1 cut(s)	241
BshNI	GGYRCC	1 cut(s)	308
BslI	CCNNNNNNNGG	1 cut(s)	158
BsmAI	GTCTC	2 cut(s)	141, 363
BsmBI	CGTCTC	1 cut(s)	363
BsnI	GGCC	1 cut(s)	241
Bsp68I	TCGCGA	1 cut(s)	108
BspACI	CCGC	1 cut(s)	38
BspANI	GGCC	1 cut(s)	241
BspCNI	CTCAG	1 cut(s)	357
BspFNI	CGCG	1 cut(s)	108
BspLI	GGNNCC	2 cut(s)	43, 310
BspMAI	CTGCAG	1 cut(s)	120
BspT107I	GGYRCC	1 cut(s)	308
BsrI	ACTGG	3 cut(s)	148, 203, 224
BssECI	CCNNGG	1 cut(s)	316
Bst2UI	CCWGG	1 cut(s)	238
Bst4CI	ACNGT	2 cut(s)	257, 317
BstC8I	GCNNGC	1 cut(s)	307
BstDEI	CTNAG	2 cut(s)	365, 411
BstDSI	CCRYGG	1 cut(s)	316
BstF5I	GGATG	2 cut(s)	45, 381
BstFNI	CGCG	1 cut(s)	108
BstMAI	GTCTC	2 cut(s)	141, 363
BstMWI	GCNNNNNNNGC	1 cut(s)	247
BstNI	CCWGG	1 cut(s)	238
BstSCI	CCNGG	1 cut(s)	236
BstSFI	CTRYAG	1 cut(s)	116
BstUI	CGCG	1 cut(s)	108
BstV1I	GCAGC	4 cut(s)	102, 179, 308, 406
BstV2I	GAAGAC	1 cut(s)	450
BsuRI	GGCC	1 cut(s)	241
BtgI	CCRYGG	1 cut(s)	316
BtsCI	GGATG	2 cut(s)	45, 381
BtsIMutI	CAGTG	2 cut(s)	141, 194
BtuMI	TCGCGA	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	307
Csp6I	GTAC	2 cut(s)	55, 211
CviJI	RGCY	8 cut(s)	73, 98, 241, 321, 329, 350, 388, 419
CviKI_1	RGCY	8 cut(s)	73, 98, 241, 321, 329, 350, 388, 419
CviQI	GTAC	2 cut(s)	55, 211
DdeI	CTNAG	2 cut(s)	365, 411
Eco147I	AGGCCT	1 cut(s)	241
EcoRII	CCWGG	1 cut(s)	236
Esp3I	CGTCTC	1 cut(s)	363
FaiI	YATR	3 cut(s)	248, 270, 462
FalI	AAGNNNNNCTT	2 cut(s)	422, 454
FauI	CCCGC	1 cut(s)	31
Fnu4HI	GCNGC	4 cut(s)	116, 193, 322, 420
FokI	GGATG	2 cut(s)	32, 388
Fsp4HI	GCNGC	4 cut(s)	116, 193, 322, 420
FspBI	CTAG	1 cut(s)	354
GluI	GCNGC	4 cut(s)	116, 193, 322, 420
GsuI	CTGGAG	1 cut(s)	83
HaeIII	GGCC	1 cut(s)	241
HinfI	GANTC	3 cut(s)	65, 173, 220
Hpy188I	TCNGA	3 cut(s)	77, 219, 343
Hpy188III	TCNNGA	2 cut(s)	62, 107
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	3 cut(s)	10, 60, 284
HpyCH4III	ACNGT	2 cut(s)	257, 317
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	3 cut(s)	84, 118, 324
HpyF10VI	GCNNNNNNNGC	1 cut(s)	247
HpyF3I	CTNAG	2 cut(s)	365, 411
HpySE526I	ACGT	1 cut(s)	213
LpnPI	CCDG	9 cut(s)	47, 114, 129, 216, 223, 237, 250, 291, 394
Lsp1109I	GCAGC	4 cut(s)	102, 179, 308, 406
LweI	GCATC	1 cut(s)	189
MaeI	CTAG	1 cut(s)	354
MaeII	ACGT	1 cut(s)	213
MboII	GAAGA	3 cut(s)	20, 455, 467
MluCI	AATT	2 cut(s)	177, 425
MlyI	GAGTC	2 cut(s)	74, 182
MmeI	TCCRAC	1 cut(s)	366
MnlI	CCTC	6 cut(s)	81, 103, 114, 151, 252, 390
MslI	CAYNNNNRTG	1 cut(s)	356
MspR9I	CCNGG	1 cut(s)	238
MvaI	CCWGG	1 cut(s)	238
MvnI	CGCG	1 cut(s)	108
MwoI	GCNNNNNNNGC	1 cut(s)	247
NlaIV	GGNNCC	2 cut(s)	43, 310
NruI	TCGCGA	1 cut(s)	108
OliI	CACNNNNGTG	1 cut(s)	356
PceI	AGGCCT	1 cut(s)	241
PfeI	GAWTC	1 cut(s)	220
PkrI	GCNGC	4 cut(s)	117, 194, 323, 421
PleI	GAGTC	2 cut(s)	73, 181
PpsI	GAGTC	2 cut(s)	73, 181
Psp6I	CCWGG	1 cut(s)	236
PspGI	CCWGG	1 cut(s)	236
PspN4I	GGNNCC	2 cut(s)	43, 310
PstI	CTGCAG	1 cut(s)	120
RruI	TCGCGA	1 cut(s)	108
RsaI	GTAC	2 cut(s)	56, 212
RsaNI	GTAC	2 cut(s)	55, 211
RseI	CAYNNNNRTG	1 cut(s)	356
SatI	GCNGC	4 cut(s)	116, 193, 322, 420
SchI	GAGTC	2 cut(s)	74, 182
ScrFI	CCNGG	1 cut(s)	238
SfaNI	GCATC	1 cut(s)	189
SfcI	CTRYAG	1 cut(s)	116
SmiMI	CAYNNNNRTG	1 cut(s)	356
SpeI	ACTAGT	1 cut(s)	353
Sse9I	AATT	2 cut(s)	177, 425
SseBI	AGGCCT	1 cut(s)	241
SsiI	CCGC	1 cut(s)	38
SspMI	CTAG	1 cut(s)	354
StuI	AGGCCT	1 cut(s)	241
StyD4I	CCNGG	1 cut(s)	236
TaaI	ACNGT	2 cut(s)	257, 317
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	1 cut(s)	165
TasI	AATT	2 cut(s)	177, 425
TfiI	GAWTC	1 cut(s)	220
TscAI	CASTG	2 cut(s)	148, 194
TseI	GCWGC	4 cut(s)	115, 192, 321, 419
TspDTI	ATGAA	1 cut(s)	464
TspGWI	ACGGA	1 cut(s)	19
TspRI	CASTG	2 cut(s)	148, 194
XspI	CTAG	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.