Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0017727

Physical Location & Seq

Genomic Coordinates Forward (+)

33571957 .. 33573685

Gene Structure 1729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018668

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGCAGAATTATGTTCCTATTGCTGCATTTATAAAACTAGCAGTCCTTCATCTCACTCGCCTCACCAAATTTGTCAACTACGACCCTGCATTTTGCTCTAAGGAGGACGAGGACATCATCCAGGCAGTTCTAAATGGCACCGTTCCATCTTACTCTCTCGAATCGAAGCTTGGAGTTTGGGAGGAAGGATTCAATTACGACGTCGGTCGGAGACGAAGTCCAGCTTGGGGGCAAGTAAAACAGATTGTTTGGTCGACGCTTTTGGATTCGAAGGAATATGGGCCGGCTCTGGTTACCAATTTCGAGTCGGATAAGTTGGCGGGGGAGTATGCAAAGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005783 GO:0005789 GO:0009526 GO:0009536 GO:0012505 GO:0016020 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0031984 GO:0042170 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04152 ko04976 map00900 map01100 map01110 map01130 map04152 map04976

Pfam Domains

Protein Families

HMG-CoA_red

Protein Analysis

114

Amino Acids

12.78

Weight (kDa)

5.34

Isoelectric Point (pI)

46.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017727)

Species	Orthologous Gene IDs
malus_domestica	MD13G1262400.v1.1
rosa_laevigata	RLG00000016669 RLG00000018668
rosa_multiflora	Rmu_sc0001084.1_g000005 Rmu_sc0002712.1_g000014 Rmu_sc0003669.1_g000029 Rmu_sc0013561.1_g000001 Rmu_sc0032262.1_g000001
rosa_roxburghii	Rroxscaffold_4G00329150 Rroxscaffold_7G00176570
rosa_samantha	Rh3BG322900 Rh4DG243400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	32
AatII	GACGTC	1 cut(s)	204
AccB1I	GGYRCC	1 cut(s)	137
AccI	GTMKAC	1 cut(s)	254
AciI	CCGC	1 cut(s)	320
AcsI	RAATTY	1 cut(s)	68
AcyI	GRCGYC	1 cut(s)	201
AfiI	CCNNNNNNNGG	1 cut(s)	227
AgsI	TTSAA	1 cut(s)	193
AjnI	CCWGG	1 cut(s)	120
AjuI	GAANNNNNNNTTGG	4 cut(s)	153, 185, 208, 240
AluBI	AGCT	2 cut(s)	169, 224
AluI	AGCT	2 cut(s)	169, 224
Alw26I	GTCTC	1 cut(s)	205
AoxI	GGCC	1 cut(s)	281
ApeKI	GCWGC	1 cut(s)	23
ApoI	RAATTY	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	281
AsuHPI	GGTGA	1 cut(s)	55
AsuII	TTCGAA	1 cut(s)	269
BanI	GGYRCC	1 cut(s)	137
BbvI	GCAGC	1 cut(s)	10
BccI	CCATC	1 cut(s)	154
BciT130I	CCWGG	1 cut(s)	122
BcoDI	GTCTC	1 cut(s)	205
BfaI	CTAG	1 cut(s)	38
BisI	GCNGC	1 cut(s)	24
BlsI	GCNGC	1 cut(s)	25
Bme1390I	CCNGG	1 cut(s)	122
BmgT120I	GGNCC	1 cut(s)	281
BmiI	GGNNCC	1 cut(s)	139
BmrFI	CCNGG	1 cut(s)	122
BoxI	GACNNNNGTC	1 cut(s)	204
Bpu14I	TTCGAA	1 cut(s)	269
BsaHI	GRCGYC	1 cut(s)	201
BsaXI	ACNNNNNCTCC	2 cut(s)	202, 232
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
Bse118I	RCCGGY	1 cut(s)	283
BseBI	CCWGG	1 cut(s)	122
BseGI	GGATG	1 cut(s)	117
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseXI	GCAGC	1 cut(s)	10
Bsh1285I	CGRYCG	1 cut(s)	208
BshFI	GGCC	1 cut(s)	283
BshNI	GGYRCC	1 cut(s)	137
BsiEI	CGRYCG	1 cut(s)	208
BsiSI	CCGG	1 cut(s)	284
BslI	CCNNNNNNNGG	1 cut(s)	227
BsmAI	GTCTC	1 cut(s)	205
BsmBI	CGTCTC	1 cut(s)	205
BsnI	GGCC	1 cut(s)	283
Bsp119I	TTCGAA	1 cut(s)	269
BspACI	CCGC	1 cut(s)	320
BspANI	GGCC	1 cut(s)	283
BspLI	GGNNCC	1 cut(s)	139
BspT104I	TTCGAA	1 cut(s)	269
BspT107I	GGYRCC	1 cut(s)	137
BsrFI	RCCGGY	1 cut(s)	283
BssAI	RCCGGY	1 cut(s)	283
BssNI	GRCGYC	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	122
Bst4CI	ACNGT	1 cut(s)	142
BstACI	GRCGYC	1 cut(s)	201
BstBI	TTCGAA	1 cut(s)	269
BstC8I	GCNNGC	1 cut(s)	285
BstDEI	CTNAG	1 cut(s)	99
BstEII	GGTNACC	1 cut(s)	292
BstF5I	GGATG	1 cut(s)	117
BstMAI	GTCTC	1 cut(s)	205
BstMCI	CGRYCG	1 cut(s)	208
BstNI	CCWGG	1 cut(s)	122
BstPAI	GACNNNNGTC	1 cut(s)	204
BstPI	GGTNACC	1 cut(s)	292
BstSCI	CCNGG	1 cut(s)	120
BstV1I	GCAGC	1 cut(s)	10
BsuRI	GGCC	1 cut(s)	283
BtsCI	GGATG	1 cut(s)	117
Cac8I	GCNNGC	1 cut(s)	285
Cfr10I	RCCGGY	1 cut(s)	283
Cfr13I	GGNCC	1 cut(s)	281
CseI	GACGC	1 cut(s)	265
CviJI	RGCY	4 cut(s)	169, 224, 283, 287
CviKI_1	RGCY	4 cut(s)	169, 224, 283, 287
DdeI	CTNAG	1 cut(s)	99
Eco91I	GGTNACC	1 cut(s)	292
EcoO65I	GGTNACC	1 cut(s)	292
EcoRII	CCWGG	1 cut(s)	120
Esp3I	CGTCTC	1 cut(s)	205
FaiI	YATR	4 cut(s)	12, 32, 279, 330
FalI	AAGNNNNNCTT	2 cut(s)	208, 240
FauI	CCCGC	1 cut(s)	313
FblI	GTMKAC	1 cut(s)	254
Fnu4HI	GCNGC	1 cut(s)	24
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	1 cut(s)	24
FspBI	CTAG	1 cut(s)	38
GluI	GCNGC	1 cut(s)	24
HaeIII	GGCC	1 cut(s)	283
HapII	CCGG	1 cut(s)	284
HgaI	GACGC	1 cut(s)	265
Hin1I	GRCGYC	1 cut(s)	201
HincII	GTYRAC	2 cut(s)	76, 255
HindII	GTYRAC	2 cut(s)	76, 255
HindIII	AAGCTT	1 cut(s)	167
HinfI	GANTC	4 cut(s)	161, 189, 266, 305
HpaII	CCGG	1 cut(s)	284
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	2 cut(s)	76, 255
Hpy188I	TCNGA	2 cut(s)	210, 310
Hpy188III	TCNNGA	1 cut(s)	158
Hpy8I	GTNNAC	2 cut(s)	76, 255
Hpy99I	CGWCG	3 cut(s)	203, 206, 259
HpyAV	CCTTC	3 cut(s)	56, 179, 265
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	4 cut(s)	4, 26, 89, 332
HpyF3I	CTNAG	1 cut(s)	99
HpySE526I	ACGT	1 cut(s)	201
Hsp92I	GRCGYC	1 cut(s)	201
KroI	GCCGGC	1 cut(s)	283
KroNI	GCCGGC	1 cut(s)	285
LpnPI	CCDG	6 cut(s)	99, 107, 134, 234, 275, 297
Lsp1109I	GCAGC	1 cut(s)	10
MaeI	CTAG	1 cut(s)	38
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	1 cut(s)	292
MluCI	AATT	4 cut(s)	7, 68, 193, 298
MlyI	GAGTC	1 cut(s)	314
MmeI	TCCRAC	2 cut(s)	188, 288
MnlI	CCTC	4 cut(s)	71, 97, 103, 175
MroNI	GCCGGC	1 cut(s)	283
MspI	CCGG	1 cut(s)	284
MspR9I	CCNGG	1 cut(s)	122
MvaI	CCWGG	1 cut(s)	122
NaeI	GCCGGC	1 cut(s)	285
NgoMIV	GCCGGC	1 cut(s)	283
NlaIV	GGNNCC	1 cut(s)	139
NspV	TTCGAA	1 cut(s)	269
PdiI	GCCGGC	1 cut(s)	285
PfeI	GAWTC	3 cut(s)	161, 189, 266
PflFI	GACNNNGTC	1 cut(s)	216
PkrI	GCNGC	1 cut(s)	25
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
PshAI	GACNNNNGTC	1 cut(s)	204
PsiI	TTATAA	1 cut(s)	32
Psp6I	CCWGG	1 cut(s)	120
PspEI	GGTNACC	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	1 cut(s)	139
PspPI	GGNCC	1 cut(s)	281
PsyI	GACNNNGTC	1 cut(s)	216
SalI	GTCGAC	1 cut(s)	253
SatI	GCNGC	1 cut(s)	24
Sau96I	GGNCC	1 cut(s)	281
SchI	GAGTC	1 cut(s)	314
ScrFI	CCNGG	1 cut(s)	122
SetI	ASST	3 cut(s)	171, 204, 226
SfuI	TTCGAA	1 cut(s)	269
Sse9I	AATT	4 cut(s)	7, 68, 193, 298
SsiI	CCGC	1 cut(s)	320
SspMI	CTAG	1 cut(s)	38
StyD4I	CCNGG	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	142
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	5 cut(s)	159, 164, 254, 269, 303
TaqII	GACCGA	1 cut(s)	194
TasI	AATT	4 cut(s)	7, 68, 193, 298
TfiI	GAWTC	3 cut(s)	161, 189, 266
TseI	GCWGC	1 cut(s)	23
TspDTI	ATGAA	1 cut(s)	38
Tth111I	GACNNNGTC	1 cut(s)	216
XapI	RAATTY	1 cut(s)	68
XmiI	GTMKAC	1 cut(s)	254
XspI	CTAG	1 cut(s)	38
ZraI	GACGTC	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.