Rmu_sc0002712.1_g000014

Choline-phosphate cytidylyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002712.1
OG0017727
Physical Location & Seq
Reverse (-)
31423 .. 34029
2607 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002712.1_g000014.1.cds

Sequence Viewer

Length: 558 bp
ctgcatctaccttatcggcttcttcggcatcgagttggtccagtccttcatctcttcggcatcgacgacgcctgggaagacgacaacgaagacgtcctcattaactcctactgctgccctccccctgccaaacccaaattcgtggacgccgaccccgtattgtgctctgaggaggacgaggacatcacccaggctgttctagacggcgccgttccgttttactctctcgaatcgaagcttggggacaagagagcggtcaaagccgttggctggtttaaggagacaaaaagaactgaggggatatcgacatcgaacattataatgaggattgtaaaagattataaccagtatgtgttgcgtaacttggatcgtggtatattagaaaagagcaaacagacggaggctcagtacatcaccgcgaaaacgtcagagtggtgggacatagaacttcctgatccctttggcgacagccacgccattgcccagaacatgaagccagtcatcgccaaattgaactacaacgacccattctcaacctcccgctacggcgacacctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00440 ko00564 ko01100 ko05231 map00440 map00564 map01100 map05231
Pfam Domains
Protein Families
CTP_transf_like

Protein Analysis

185

Amino Acids

21.08

Weight (kDa)

5.01

Isoelectric Point (pI)

38.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 320, 342
AatII GACGTC 1 cut(s) 96
AccB1I GGYRCC 1 cut(s) 206
AccBSI CCGCTC 1 cut(s) 254
AccII CGCG 1 cut(s) 419
AciI CCGC 3 cut(s) 254, 417, 541
AclWI GGATC 2 cut(s) 375, 449
AcsI RAATTY 1 cut(s) 137
AcyI GRCGYC 4 cut(s) 69, 93, 147, 207
AfaI GTAC 1 cut(s) 410
AfiI CCNNNNNNNGG 1 cut(s) 270
AgsI TTSAA 1 cut(s) 514
AjnI CCWGG 2 cut(s) 71, 189
AjuI GAANNNNNNNTTGG 4 cut(s) 122, 154, 222, 254
AluBI AGCT 1 cut(s) 238
AluI AGCT 1 cut(s) 238
Alw21I GWGCWC 1 cut(s) 167
Alw26I GTCTC 1 cut(s) 275
AlwI GGATC 2 cut(s) 375, 449
ApeKI GCWGC 1 cut(s) 114
ApoI RAATTY 1 cut(s) 137
AspLEI GCGC 1 cut(s) 209
AspS9I GGNCC 1 cut(s) 38
AsuHPI GGTGA 2 cut(s) 178, 406
AvaII GGWCC 1 cut(s) 38
BanI GGYRCC 1 cut(s) 206
BbsI GAAGAC 2 cut(s) 84, 96
Bbv12I GWGCWC 1 cut(s) 167
BbvI GCAGC 1 cut(s) 101
BceAI ACGGC 3 cut(s) 194, 220, 248
BciT130I CCWGG 2 cut(s) 73, 191
BcoDI GTCTC 1 cut(s) 275
BfaI CTAG 1 cut(s) 200
BfoI RGCGCY 1 cut(s) 210
BisI GCNGC 1 cut(s) 115
BlsI GCNGC 1 cut(s) 116
Bme1390I CCNGG 2 cut(s) 73, 191
Bme18I GGWCC 1 cut(s) 38
BmgT120I GGNCC 1 cut(s) 38
BmiI GGNNCC 1 cut(s) 208
BmrFI CCNGG 2 cut(s) 73, 191
BmsI GCATC 3 cut(s) 13, 37, 69
BpiI GAAGAC 2 cut(s) 84, 96
BsaHI GRCGYC 4 cut(s) 69, 93, 147, 207
BsaJI CCNNGG 2 cut(s) 72, 189
BsaXI ACNNNNNCTCC 2 cut(s) 392, 422
Bsc4I CCNNNNNNNGG 1 cut(s) 270
Bse1I ACTGG 3 cut(s) 41, 346, 497
Bse3DI GCAATG 1 cut(s) 477
BseBI CCWGG 2 cut(s) 73, 191
BseDI CCNNGG 2 cut(s) 72, 189
BseLI CCNNNNNNNGG 1 cut(s) 270
BseMI GCAATG 1 cut(s) 477
BseMII CTCAG 3 cut(s) 159, 285, 419
BseNI ACTGG 3 cut(s) 41, 346, 497
BseRI GAGGAG 1 cut(s) 185
BseXI GCAGC 1 cut(s) 101
Bsh1236I CGCG 1 cut(s) 419
BshNI GGYRCC 1 cut(s) 206
BsiHKAI GWGCWC 1 cut(s) 167
BslFI GGGAC 2 cut(s) 257, 452
BslI CCNNNNNNNGG 1 cut(s) 270
BsmAI GTCTC 1 cut(s) 275
BsmFI GGGAC 2 cut(s) 257, 452
Bsp1286I GDGCHC 1 cut(s) 167
Bsp143I GATC 2 cut(s) 367, 454
BspACI CCGC 3 cut(s) 254, 417, 541
BspCNI CTCAG 3 cut(s) 160, 286, 418
BspFNI CGCG 1 cut(s) 419
BspLI GGNNCC 1 cut(s) 208
BspPI GGATC 2 cut(s) 375, 449
BspT107I GGYRCC 1 cut(s) 206
BsrBI CCGCTC 1 cut(s) 254
BsrDI GCAATG 1 cut(s) 477
BsrI ACTGG 3 cut(s) 41, 346, 497
BssECI CCNNGG 2 cut(s) 72, 189
BssMI GATC 2 cut(s) 367, 454
BssNI GRCGYC 4 cut(s) 69, 93, 147, 207
Bst2UI CCWGG 2 cut(s) 73, 191
Bst6I CTCTTC 1 cut(s) 59
BstACI GRCGYC 4 cut(s) 69, 93, 147, 207
BstDEI CTNAG 3 cut(s) 168, 294, 405
BstFNI CGCG 1 cut(s) 419
BstH2I RGCGCY 1 cut(s) 210
BstHHI GCGC 1 cut(s) 209
BstKTI GATC 2 cut(s) 370, 457
BstMAI GTCTC 1 cut(s) 275
BstMBI GATC 2 cut(s) 367, 454
BstMWI GCNNNNNNNGC 2 cut(s) 25, 260
BstNI CCWGG 2 cut(s) 73, 191
BstSCI CCNGG 2 cut(s) 71, 189
BstUI CGCG 1 cut(s) 419
BstV1I GCAGC 1 cut(s) 101
BstV2I GAAGAC 2 cut(s) 84, 96
BstXI CCANNNNNNTGG 1 cut(s) 142
BtgZI GCGATG 1 cut(s) 487
CfoI GCGC 1 cut(s) 209
Cfr13I GGNCC 1 cut(s) 38
CseI GACGC 2 cut(s) 77, 155
Csp6I GTAC 1 cut(s) 409
CviAII CATG 1 cut(s) 490
CviJI RGCY 8 cut(s) 19, 194, 238, 263, 270, 404, 471, 496
CviKI_1 RGCY 8 cut(s) 19, 194, 238, 263, 270, 404, 471, 496
CviQI GTAC 1 cut(s) 409
DdeI CTNAG 3 cut(s) 168, 294, 405
DinI GGCGCC 1 cut(s) 208
DpnI GATC 2 cut(s) 369, 456
DpnII GATC 2 cut(s) 367, 454
Eam1104I CTCTTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 59
Eco32I GATATC 1 cut(s) 303
Eco47I GGWCC 1 cut(s) 38
EcoRII CCWGG 2 cut(s) 71, 189
EcoRV GATATC 1 cut(s) 303
EgeI GGCGCC 1 cut(s) 208
EheI GGCGCC 1 cut(s) 208
FaeI CATG 1 cut(s) 493
FaiI YATR 6 cut(s) 320, 342, 351, 377, 443, 491
FaqI GGGAC 2 cut(s) 257, 452
FatI CATG 1 cut(s) 489
FauI CCCGC 1 cut(s) 548
Fnu4HI GCNGC 1 cut(s) 115
Fsp4HI GCNGC 1 cut(s) 115
FspBI CTAG 1 cut(s) 200
GlaI GCGC 1 cut(s) 208
GluI GCNGC 1 cut(s) 115
HaeII RGCGCY 1 cut(s) 210
HgaI GACGC 2 cut(s) 77, 155
HhaI GCGC 1 cut(s) 209
Hin1I GRCGYC 4 cut(s) 69, 93, 147, 207
Hin1II CATG 1 cut(s) 493
Hin6I GCGC 1 cut(s) 207
HinP1I GCGC 1 cut(s) 207
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 1 cut(s) 230
HphI GGTGA 2 cut(s) 178, 406
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 2 cut(s) 169, 430
Hpy188III TCNNGA 3 cut(s) 200, 227, 452
Hpy8I GTNNAC 1 cut(s) 145
Hpy99I CGWCG 2 cut(s) 68, 71
HpyAV CCTTC 1 cut(s) 56
HpyCH4IV ACGT 2 cut(s) 93, 425
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 260
HpyF3I CTNAG 3 cut(s) 168, 294, 405
HpySE526I ACGT 2 cut(s) 93, 425
Hsp92I GRCGYC 4 cut(s) 69, 93, 147, 207
Hsp92II CATG 1 cut(s) 493
HspAI GCGC 1 cut(s) 207
KasI GGCGCC 1 cut(s) 206
Kzo9I GATC 2 cut(s) 367, 454
Lsp1109I GCAGC 1 cut(s) 101
LweI GCATC 3 cut(s) 13, 37, 69
MaeI CTAG 1 cut(s) 200
MaeII ACGT 2 cut(s) 93, 425
MaeIII GTNAC 1 cut(s) 359
MalI GATC 2 cut(s) 369, 456
MbiI CCGCTC 1 cut(s) 254
MboI GATC 2 cut(s) 367, 454
MboII GAAGA 4 cut(s) 14, 46, 89, 101
MhlI GDGCHC 1 cut(s) 167
MluCI AATT 2 cut(s) 137, 509
Mly113I GGCGCC 1 cut(s) 207
MnlI CCTC 9 cut(s) 107, 129, 163, 166, 172, 289, 318, 394, 547
MseI TTAA 2 cut(s) 102, 276
MslI CAYNNNNRTG 1 cut(s) 320
MspR9I CCNGG 2 cut(s) 73, 191
MvaI CCWGG 2 cut(s) 73, 191
MvnI CGCG 1 cut(s) 419
MwoI GCNNNNNNNGC 2 cut(s) 25, 260
NarI GGCGCC 1 cut(s) 207
NdeII GATC 2 cut(s) 367, 454
NlaIII CATG 1 cut(s) 493
NlaIV GGNNCC 1 cut(s) 208
PcsI WCGNNNNNNNCGW 3 cut(s) 63, 147, 153
PfeI GAWTC 1 cut(s) 230
PkrI GCNGC 1 cut(s) 116
PluTI GGCGCC 1 cut(s) 210
PsiI TTATAA 2 cut(s) 320, 342
Psp6I CCWGG 2 cut(s) 71, 189
PspGI CCWGG 2 cut(s) 71, 189
PspN4I GGNNCC 1 cut(s) 208
PspPI GGNCC 1 cut(s) 38
RsaI GTAC 1 cut(s) 410
RsaNI GTAC 1 cut(s) 409
RseI CAYNNNNRTG 1 cut(s) 320
SaqAI TTAA 2 cut(s) 102, 276
SatI GCNGC 1 cut(s) 115
Sau3AI GATC 2 cut(s) 367, 454
Sau96I GGNCC 1 cut(s) 38
ScrFI CCNGG 2 cut(s) 73, 191
SduI GDGCHC 1 cut(s) 167
SetI ASST 6 cut(s) 13, 96, 240, 428, 539, 557
SfaNI GCATC 3 cut(s) 13, 37, 69
SfoI GGCGCC 1 cut(s) 208
SinI GGWCC 1 cut(s) 38
SmiMI CAYNNNNRTG 1 cut(s) 320
Sse9I AATT 2 cut(s) 137, 509
SsiI CCGC 3 cut(s) 254, 417, 541
SspDI GGCGCC 1 cut(s) 206
SspMI CTAG 1 cut(s) 200
StyD4I CCNGG 2 cut(s) 71, 189
TaiI ACGT 2 cut(s) 96, 428
TaqI TCGA 6 cut(s) 31, 63, 228, 233, 305, 311
TasI AATT 2 cut(s) 137, 509
TatI WGTACW 1 cut(s) 408
TfiI GAWTC 1 cut(s) 230
Tru1I TTAA 2 cut(s) 102, 276
Tru9I TTAA 2 cut(s) 102, 276
TseI GCWGC 1 cut(s) 114
TspDTI ATGAA 2 cut(s) 38, 506
TspGWI ACGGA 2 cut(s) 204, 413
VpaK11BI GGWCC 1 cut(s) 38
XapI RAATTY 1 cut(s) 137
XbaI TCTAGA 1 cut(s) 199
XspI CTAG 1 cut(s) 200
ZraI GACGTC 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.