Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0017727

Physical Location & Seq

Genomic Coordinates Forward (+)

33310219 .. 33325075

Gene Structure 14857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG322900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGGATGTCGACCTCGTATTGTGCTCTGAGGAGGACGAGGACATCATCCAGGCCGTTCTAAACGGCGCCGTTCCGTTTTACTCTCTCAAATCTAAGCTCGGGGACTGCAAGAGAGCGGCGGCGATTCGACGCGAGTGGCTTCAGAGAACGCTTGTAAACTGCATGAGAGGTAATTACGCATCTTCCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005783 GO:0005789 GO:0009526 GO:0009536 GO:0012505 GO:0016020 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0031984 GO:0042170 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04152 ko04976 map00900 map01100 map01110 map01130 map04152 map04976

Pfam Domains

Protein Families

HMG-CoA_red

Protein Analysis

63

Amino Acids

7.08

Weight (kDa)

5.17

Isoelectric Point (pI)

53.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017727)

Species	Orthologous Gene IDs
malus_domestica	MD13G1262400.v1.1
rosa_laevigata	RLG00000016669 RLG00000018668
rosa_multiflora	Rmu_sc0001084.1_g000005 Rmu_sc0002712.1_g000014 Rmu_sc0003669.1_g000029 Rmu_sc0013561.1_g000001 Rmu_sc0032262.1_g000001
rosa_roxburghii	Rroxscaffold_4G00329150 Rroxscaffold_7G00176570
rosa_samantha	Rh3BG322900 Rh4DG243400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	65
AccBSI	CCGCTC	1 cut(s)	116
AccI	GTMKAC	1 cut(s)	9
AccII	CGCG	1 cut(s)	132
AciI	CCGC	2 cut(s)	116, 119
AcuI	CTGAAG	1 cut(s)	125
AcyI	GRCGYC	1 cut(s)	66
AjnI	CCWGG	1 cut(s)	48
AluBI	AGCT	1 cut(s)	97
AluI	AGCT	1 cut(s)	97
Alw21I	GWGCWC	1 cut(s)	26
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	1 cut(s)	51
AspLEI	GCGC	1 cut(s)	68
AvaI	CYCGRG	1 cut(s)	98
BanI	GGYRCC	1 cut(s)	65
Bbv12I	GWGCWC	1 cut(s)	26
BceAI	ACGGC	3 cut(s)	38, 53, 79
BciT130I	CCWGG	1 cut(s)	50
BfoI	RGCGCY	1 cut(s)	69
BisI	GCNGC	2 cut(s)	117, 120
BlsI	GCNGC	2 cut(s)	118, 121
Bme1390I	CCNGG	1 cut(s)	50
BmeT110I	CYCGRG	1 cut(s)	98
BmiI	GGNNCC	1 cut(s)	67
BmrFI	CCNGG	1 cut(s)	50
BmsI	GCATC	1 cut(s)	188
BsaHI	GRCGYC	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	50
BseGI	GGATG	2 cut(s)	10, 45
BseMII	CTCAG	1 cut(s)	18
BseRI	GAGGAG	1 cut(s)	44
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	1 cut(s)	53
BshNI	GGYRCC	1 cut(s)	65
BsiHKAI	GWGCWC	1 cut(s)	26
BsiHKCI	CYCGRG	1 cut(s)	98
BslFI	GGGAC	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	116
BsnI	GGCC	1 cut(s)	53
BsoBI	CYCGRG	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	26
BspACI	CCGC	2 cut(s)	116, 119
BspANI	GGCC	1 cut(s)	53
BspCNI	CTCAG	1 cut(s)	19
BspFNI	CGCG	1 cut(s)	132
BspLI	GGNNCC	1 cut(s)	67
BspT107I	GGYRCC	1 cut(s)	65
BsrBI	CCGCTC	1 cut(s)	116
BssNI	GRCGYC	1 cut(s)	66
Bst2UI	CCWGG	1 cut(s)	50
BstACI	GRCGYC	1 cut(s)	66
BstDEI	CTNAG	2 cut(s)	27, 93
BstF5I	GGATG	2 cut(s)	10, 45
BstFNI	CGCG	1 cut(s)	132
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	68
BstNI	CCWGG	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	48
BstUI	CGCG	1 cut(s)	132
BsuRI	GGCC	1 cut(s)	53
BtsCI	GGATG	2 cut(s)	10, 45
CfoI	GCGC	1 cut(s)	68
CseI	GACGC	1 cut(s)	138
CviAII	CATG	1 cut(s)	163
CviJI	RGCY	3 cut(s)	53, 97, 139
CviKI_1	RGCY	3 cut(s)	53, 97, 139
DdeI	CTNAG	2 cut(s)	27, 93
DinI	GGCGCC	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	125
Eco88I	CYCGRG	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	48
EgeI	GGCGCC	1 cut(s)	67
EheI	GGCGCC	1 cut(s)	67
FaeI	CATG	1 cut(s)	166
FaiI	YATR	1 cut(s)	164
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	1 cut(s)	162
FblI	GTMKAC	1 cut(s)	9
Fnu4HI	GCNGC	2 cut(s)	117, 120
FokI	GGATG	2 cut(s)	17, 32
Fsp4HI	GCNGC	2 cut(s)	117, 120
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	2 cut(s)	117, 120
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	53
HgaI	GACGC	1 cut(s)	138
HhaI	GCGC	1 cut(s)	68
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	1 cut(s)	166
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	1 cut(s)	124
Hpy166II	GTNNAC	2 cut(s)	10, 157
Hpy188I	TCNGA	2 cut(s)	28, 144
Hpy8I	GTNNAC	2 cut(s)	10, 157
Hpy99I	CGWCG	1 cut(s)	132
HpyCH4V	TGCA	2 cut(s)	108, 162
HpyF3I	CTNAG	2 cut(s)	27, 93
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	1 cut(s)	166
HspAI	GCGC	1 cut(s)	66
KasI	GGCGCC	1 cut(s)	65
LpnPI	CCDG	2 cut(s)	35, 62
LweI	GCATC	1 cut(s)	188
MbiI	CCGCTC	1 cut(s)	116
MboII	GAAGA	1 cut(s)	174
MhlI	GDGCHC	1 cut(s)	26
MluCI	AATT	1 cut(s)	172
Mly113I	GGCGCC	1 cut(s)	66
MnlI	CCTC	5 cut(s)	22, 23, 25, 31, 161
MspR9I	CCNGG	1 cut(s)	50
MvaI	CCWGG	1 cut(s)	50
MvnI	CGCG	1 cut(s)	132
NarI	GGCGCC	1 cut(s)	66
NlaIII	CATG	1 cut(s)	166
NlaIV	GGNNCC	1 cut(s)	67
PfeI	GAWTC	1 cut(s)	124
PkrI	GCNGC	2 cut(s)	118, 121
PluTI	GGCGCC	1 cut(s)	69
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
PspN4I	GGNNCC	1 cut(s)	67
SalI	GTCGAC	1 cut(s)	8
SatI	GCNGC	2 cut(s)	117, 120
ScrFI	CCNGG	1 cut(s)	50
SduI	GDGCHC	1 cut(s)	26
SetI	ASST	3 cut(s)	15, 99, 172
SfaNI	GCATC	1 cut(s)	188
SfoI	GGCGCC	1 cut(s)	67
Sse9I	AATT	1 cut(s)	172
SsiI	CCGC	2 cut(s)	116, 119
SspDI	GGCGCC	1 cut(s)	65
StyD4I	CCNGG	1 cut(s)	48
TaqI	TCGA	2 cut(s)	9, 127
TasI	AATT	1 cut(s)	172
TauI	GCSGC	2 cut(s)	119, 122
TfiI	GAWTC	1 cut(s)	124
TspGWI	ACGGA	1 cut(s)	63
XmiI	GTMKAC	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.