Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032262.1

Orthogroup ID

OG0017727

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 613

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032262.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ggtcttggttgcgtccttcgtctacctcctcgccttcttcggcatcgatttcgttcagaccccagctctcaaggacgacgaagaagaagaagacattattgtccaggaggatgctcgcgtggtcccttgcggccaagccctcgagtgcccggttccccagattgcccctaaagtttcacagaaggtgtctgaggaaaggccggccaccgagacccctccactgactgcagaagatgaggagattatcaaggctgtggttgccggaaccattccttcatattcactcgagtcgaagctcggcgattgcaggagggctgcttctattaggcgggaggctttgcagagagttacaggcaagtctcttgagggtttgccattggagggtttcgattacgagtccattttgggtcaatgctgtgaaatgccaattgggtatgtcaccattcctgttgggattgctgggcctctgatgcttgatggaagagaattctcagtccccatggccaccactgaaggttgcttggtggctagcaccaaccgtggttgcaaagctatcaacttgtccggtggggcttcaagtgtgcttttgaaggatggaatgaccagagcacc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004420 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0009058 GO:0009526 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016104 GO:0016114 GO:0016125 GO:0016126 GO:0016491 GO:0016614 GO:0016616 GO:0031090 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0031984 GO:0042170 GO:0042175 GO:0042282 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044435 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098588 GO:0098805 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04152 ko04976 map00900 map01100 map01110 map01130 map04152 map04976

Pfam Domains

Protein Families

HMG-CoA_red

Protein Analysis

204

Amino Acids

21.76

Weight (kDa)

4.51

Isoelectric Point (pI)

47.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017727)

Species	Orthologous Gene IDs
malus_domestica	MD13G1262400.v1.1
rosa_laevigata	RLG00000016669 RLG00000018668
rosa_multiflora	Rmu_sc0001084.1_g000005 Rmu_sc0002712.1_g000014 Rmu_sc0003669.1_g000029 Rmu_sc0013561.1_g000001 Rmu_sc0032262.1_g000001
rosa_roxburghii	Rroxscaffold_4G00329150 Rroxscaffold_7G00176570
rosa_samantha	Rh3BG322900 Rh4DG243400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	99
AccI	GTMKAC	1 cut(s)	22
AccII	CGCG	1 cut(s)	118
AciI	CCGC	2 cut(s)	130, 329
AcoI	YGGCCR	3 cut(s)	131, 202, 502
AcsI	RAATTY	1 cut(s)	486
AcuI	CTGAAG	1 cut(s)	532
AfiI	CCNNNNNNNGG	1 cut(s)	381
AgsI	TTSAA	2 cut(s)	577, 590
AjnI	CCWGG	1 cut(s)	103
AjuI	GAANNNNNNNTTGG	2 cut(s)	412, 444
AluBI	AGCT	3 cut(s)	66, 296, 552
AluI	AGCT	3 cut(s)	66, 296, 552
Alw21I	GWGCWC	1 cut(s)	611
Alw26I	GTCTC	2 cut(s)	204, 364
Ama87I	CYCGRG	2 cut(s)	141, 285
AoxI	GGCC	5 cut(s)	131, 198, 202, 462, 502
ApeKI	GCWGC	1 cut(s)	315
ApoI	RAATTY	1 cut(s)	486
AspS9I	GGNCC	2 cut(s)	122, 462
AsuC2I	CCSGG	1 cut(s)	150
AsuHPI	GGTGA	1 cut(s)	431
AsuNHI	GCTAGC	1 cut(s)	528
AvaI	CYCGRG	2 cut(s)	141, 285
AvaII	GGWCC	1 cut(s)	122
BaeGI	GKGCMC	1 cut(s)	150
BalI	TGGCCA	1 cut(s)	504
BbsI	GAAGAC	1 cut(s)	97
Bbv12I	GWGCWC	1 cut(s)	611
BbvI	GCAGC	1 cut(s)	302
BccI	CCATC	2 cut(s)	471, 588
BcgI	CGANNNNNNTGC	2 cut(s)	32, 66
BciT130I	CCWGG	1 cut(s)	105
BcnI	CCSGG	1 cut(s)	150
BcoDI	GTCTC	2 cut(s)	204, 364
BfaI	CTAG	1 cut(s)	529
BfmI	CTRYAG	1 cut(s)	226
BisI	GCNGC	2 cut(s)	131, 316
BlsI	GCNGC	2 cut(s)	132, 317
Bme1390I	CCNGG	2 cut(s)	105, 150
Bme18I	GGWCC	1 cut(s)	122
BmeT110I	CYCGRG	2 cut(s)	141, 285
BmgT120I	GGNCC	2 cut(s)	122, 462
BmiI	GGNNCC	3 cut(s)	124, 154, 266
BmrFI	CCNGG	2 cut(s)	105, 150
BmsI	GCATC	3 cut(s)	52, 101, 460
BmtI	GCTAGC	1 cut(s)	532
BpiI	GAAGAC	1 cut(s)	97
BpuEI	CTTGAG	2 cut(s)	54, 384
BpuMI	CCSGG	1 cut(s)	150
Bsa29I	ATCGAT	1 cut(s)	46
BsaI	GGTCTC	1 cut(s)	204
BsaJI	CCNNGG	2 cut(s)	499, 539
BsaWI	WCCGGW	1 cut(s)	564
Bsc4I	CCNNNNNNNGG	1 cut(s)	381
Bse118I	RCCGGY	1 cut(s)	200
BseBI	CCWGG	1 cut(s)	105
BseCI	ATCGAT	1 cut(s)	46
BseDI	CCNNGG	2 cut(s)	499, 539
BseGI	GGATG	2 cut(s)	116, 599
BseLI	CCNNNNNNNGG	1 cut(s)	381
BseMII	CTCAG	2 cut(s)	181, 505
BseRI	GAGGAG	2 cut(s)	18, 252
BseSI	GKGCMC	1 cut(s)	150
BseXI	GCAGC	1 cut(s)	302
BseYI	CCCAGC	2 cut(s)	62, 459
Bsh1236I	CGCG	1 cut(s)	118
BshFI	GGCC	5 cut(s)	133, 200, 204, 464, 504
BshVI	ATCGAT	1 cut(s)	46
BsiHKAI	GWGCWC	1 cut(s)	611
BsiHKCI	CYCGRG	2 cut(s)	141, 285
BsiSI	CCGG	4 cut(s)	150, 201, 262, 565
BslFI	GGGAC	2 cut(s)	108, 480
BslI	CCNNNNNNNGG	1 cut(s)	381
BsmAI	GTCTC	2 cut(s)	204, 364
BsmFI	GGGAC	2 cut(s)	108, 480
BsnI	GGCC	5 cut(s)	133, 200, 204, 464, 504
Bso31I	GGTCTC	1 cut(s)	204
BsoBI	CYCGRG	2 cut(s)	141, 285
Bsp1286I	GDGCHC	2 cut(s)	150, 611
Bsp19I	CCATGG	1 cut(s)	499
BspACI	CCGC	2 cut(s)	130, 329
BspANI	GGCC	5 cut(s)	133, 200, 204, 464, 504
BspCNI	CTCAG	2 cut(s)	182, 504
BspDI	ATCGAT	1 cut(s)	46
BspFNI	CGCG	1 cut(s)	118
BspLI	GGNNCC	3 cut(s)	124, 154, 266
BspMAI	CTGCAG	1 cut(s)	230
BspOI	GCTAGC	1 cut(s)	532
BspTNI	GGTCTC	1 cut(s)	204
BsrFI	RCCGGY	1 cut(s)	200
BssAI	RCCGGY	1 cut(s)	200
BssECI	CCNNGG	2 cut(s)	499, 539
BssT1I	CCWWGG	1 cut(s)	499
Bst2UI	CCWGG	1 cut(s)	105
Bst4CI	ACNGT	1 cut(s)	540
Bst6I	CTCTTC	1 cut(s)	476
BstC8I	GCNNGC	3 cut(s)	116, 202, 530
BstDEI	CTNAG	2 cut(s)	190, 491
BstDSI	CCRYGG	2 cut(s)	499, 539
BstF5I	GGATG	2 cut(s)	116, 599
BstFNI	CGCG	1 cut(s)	118
BstMAI	GTCTC	2 cut(s)	204, 364
BstMWI	GCNNNNNNNGC	2 cut(s)	258, 470
BstNI	CCWGG	1 cut(s)	105
BstSCI	CCNGG	2 cut(s)	103, 148
BstSFI	CTRYAG	1 cut(s)	226
BstSLI	GKGCMC	1 cut(s)	150
BstUI	CGCG	1 cut(s)	118
BstV1I	GCAGC	1 cut(s)	302
BstV2I	GAAGAC	1 cut(s)	97
Bsu15I	ATCGAT	1 cut(s)	46
BsuRI	GGCC	5 cut(s)	133, 200, 204, 464, 504
BsuTUI	ATCGAT	1 cut(s)	46
BtgI	CCRYGG	2 cut(s)	499, 539
BtsCI	GGATG	2 cut(s)	116, 599
BtsIMutI	CAGTG	2 cut(s)	219, 508
Cac8I	GCNNGC	3 cut(s)	116, 202, 530
Cfr10I	RCCGGY	1 cut(s)	200
Cfr13I	GGNCC	2 cut(s)	122, 462
ClaI	ATCGAT	1 cut(s)	46
CviAII	CATG	1 cut(s)	500
DdeI	CTNAG	2 cut(s)	190, 491
DrdI	GACNNNNNNGTC	1 cut(s)	99
DseDI	GACNNNNNNGTC	1 cut(s)	99
EaeI	YGGCCR	3 cut(s)	131, 202, 502
Eam1104I	CTCTTC	1 cut(s)	476
EarI	CTCTTC	1 cut(s)	476
Eco130I	CCWWGG	1 cut(s)	499
Eco31I	GGTCTC	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	122
Eco57I	CTGAAG	1 cut(s)	532
Eco88I	CYCGRG	2 cut(s)	141, 285
EcoRI	GAATTC	1 cut(s)	486
EcoRII	CCWGG	1 cut(s)	103
EcoT14I	CCWWGG	1 cut(s)	499
ErhI	CCWWGG	1 cut(s)	499
FaeI	CATG	1 cut(s)	503
FaiI	YATR	3 cut(s)	278, 436, 501
FaqI	GGGAC	2 cut(s)	108, 480
FatI	CATG	1 cut(s)	499
FauI	CCCGC	1 cut(s)	322
FblI	GTMKAC	1 cut(s)	22
Fnu4HI	GCNGC	2 cut(s)	131, 316
FokI	GGATG	2 cut(s)	123, 606
FseI	GGCCGGCC	1 cut(s)	204
Fsp4HI	GCNGC	2 cut(s)	131, 316
FspBI	CTAG	1 cut(s)	529
GluI	GCNGC	2 cut(s)	131, 316
GsaI	CCCAGC	2 cut(s)	66, 463
HaeIII	GGCC	5 cut(s)	133, 200, 204, 464, 504
HapII	CCGG	4 cut(s)	150, 201, 262, 565
Hin1II	CATG	1 cut(s)	503
HinfI	GANTC	2 cut(s)	288, 396
HpaII	CCGG	4 cut(s)	150, 201, 262, 565
HphI	GGTGA	1 cut(s)	431
Hpy166II	GTNNAC	1 cut(s)	23
Hpy188I	TCNGA	3 cut(s)	58, 191, 469
Hpy188III	TCNNGA	1 cut(s)	363
Hpy8I	GTNNAC	1 cut(s)	23
Hpy99I	CGWCG	1 cut(s)	81
HpyAV	CCTTC	6 cut(s)	26, 44, 176, 283, 507, 584
HpyCH4III	ACNGT	1 cut(s)	540
HpyCH4V	TGCA	4 cut(s)	228, 307, 341, 547
HpyF10VI	GCNNNNNNNGC	2 cut(s)	258, 470
HpyF3I	CTNAG	2 cut(s)	190, 491
Hsp92II	CATG	1 cut(s)	503
KroI	GCCGGC	1 cut(s)	200
KroNI	GCCGGC	1 cut(s)	202
Lsp1109I	GCAGC	1 cut(s)	302
LweI	GCATC	3 cut(s)	52, 101, 460
MaeI	CTAG	1 cut(s)	529
MaeIII	GTNAC	2 cut(s)	347, 437
MboII	GAAGA	7 cut(s)	29, 93, 96, 99, 102, 243, 493
MfeI	CAATTG	1 cut(s)	427
MhlI	GDGCHC	2 cut(s)	150, 611
MlsI	TGGCCA	1 cut(s)	504
MluCI	AATT	2 cut(s)	427, 486
MluNI	TGGCCA	1 cut(s)	504
MlyI	GAGTC	2 cut(s)	297, 405
Mox20I	TGGCCA	1 cut(s)	504
MroNI	GCCGGC	1 cut(s)	200
MscI	TGGCCA	1 cut(s)	504
Msp20I	TGGCCA	1 cut(s)	504
MspI	CCGG	4 cut(s)	150, 201, 262, 565
MspR9I	CCNGG	2 cut(s)	105, 150
MunI	CAATTG	1 cut(s)	427
MvaI	CCWGG	1 cut(s)	105
MvnI	CGCG	1 cut(s)	118
MwoI	GCNNNNNNNGC	2 cut(s)	258, 470
NaeI	GCCGGC	1 cut(s)	202
NciI	CCSGG	1 cut(s)	150
NcoI	CCATGG	1 cut(s)	499
NgoMIV	GCCGGC	1 cut(s)	200
NheI	GCTAGC	1 cut(s)	528
NlaIII	CATG	1 cut(s)	503
NlaIV	GGNNCC	3 cut(s)	124, 154, 266
NmeAIII	GCCGAG	1 cut(s)	277
NmuCI	GTSAC	1 cut(s)	437
PaeR7I	CTCGAG	2 cut(s)	141, 285
PdiI	GCCGGC	1 cut(s)	202
PfoI	TCCNGGA	1 cut(s)	103
PkrI	GCNGC	2 cut(s)	132, 317
PleI	GAGTC	2 cut(s)	296, 404
PpsI	GAGTC	2 cut(s)	296, 404
Psp6I	CCWGG	1 cut(s)	103
PspFI	CCCAGC	2 cut(s)	62, 459
PspGI	CCWGG	1 cut(s)	103
PspN4I	GGNNCC	3 cut(s)	124, 154, 266
PspPI	GGNCC	2 cut(s)	122, 462
PspXI	VCTCGAGB	2 cut(s)	141, 285
PstI	CTGCAG	1 cut(s)	230
RigI	GGCCGGCC	1 cut(s)	204
SatI	GCNGC	2 cut(s)	131, 316
Sau96I	GGNCC	2 cut(s)	122, 462
SchI	GAGTC	2 cut(s)	297, 405
ScrFI	CCNGG	2 cut(s)	105, 150
SduI	GDGCHC	2 cut(s)	150, 611
SetI	ASST	6 cut(s)	28, 68, 187, 298, 518, 554
SfaNI	GCATC	3 cut(s)	52, 101, 460
SfcI	CTRYAG	1 cut(s)	226
Sfr274I	CTCGAG	2 cut(s)	141, 285
SinI	GGWCC	1 cut(s)	122
SlaI	CTCGAG	2 cut(s)	141, 285
SmlI	CTYRAG	4 cut(s)	69, 141, 285, 363
SmoI	CTYRAG	4 cut(s)	69, 141, 285, 363
Sse9I	AATT	2 cut(s)	427, 486
SsiI	CCGC	2 cut(s)	130, 329
SspMI	CTAG	1 cut(s)	529
StyD4I	CCNGG	2 cut(s)	103, 148
StyI	CCWWGG	1 cut(s)	499
TaaI	ACNGT	1 cut(s)	540
TaqI	TCGA	5 cut(s)	46, 142, 286, 291, 388
TasI	AATT	2 cut(s)	427, 486
TauI	GCSGC	1 cut(s)	133
TscAI	CASTG	2 cut(s)	226, 515
TseFI	GTSAC	1 cut(s)	437
TseI	GCWGC	1 cut(s)	315
Tsp45I	GTSAC	1 cut(s)	437
TspDTI	ATGAA	1 cut(s)	265
TspRI	CASTG	2 cut(s)	226, 515
VpaK11BI	GGWCC	1 cut(s)	122
XapI	RAATTY	1 cut(s)	486
XhoI	CTCGAG	2 cut(s)	141, 285
XmiI	GTMKAC	1 cut(s)	22
XspI	CTAG	1 cut(s)	529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.