Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003669.1

Orthogroup ID

OG0017727

Physical Location & Seq

Genomic Coordinates Forward (+)

100580 .. 108517

Gene Structure 7938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003669.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

atgcttctggcgctgtttaaagcgctcgggttaagtattgttgattctgttgatctctgtggcgagggaaggtgggcaatgctagacgcgaacgacgagtatttggtggggatgctgatgaggaacgagatggactcagagttgactcgcgagaactgtgtggcggcactgtgcatattgagccatatgtcgataaggttctgggggctggcgagggagtcgaaggcggtcggtggaggagggaaggcgaaggatggtggcccagactgggagggggttttgtattcgggttcagagttaggattcgcactggaacccgccatttttggttttagtgcacgacgtcgagcacgtggttggcgtatgctacgatggcagtggtttgggttttcgtttgttgctgcagatcttgattgtgccaagaaatgttcgattttgacgctctgggtcggtggcgtggctcggagagattggaccgctgccatggcagtgtggatcttgacgatgtggtccttcatctcacgcgcctcccactacgacgatgaggtgctcatcaactgccgctgctaccctcccccaaccaaacccaaattcgtccacactgacccctcattgtgcttcgaggaggacgaagacatcatccaagccgttctagaatcgaagctcggcgactgcaatatcatagaagcgattcgcgagtcgccaatcggagacgaagtaatctttatagagtttaagaagctcgagtttgtgggtgggttgaagaactgtgaatttttagagaaagtcaagtccagcttggagattgggtggtctggagttgactggagaggaaaagagtttggacttaattgctccaaaagttcagaacttatggtgagggtattttatgctgttaggatctttcttggtctcatctctgttattactgaaaccattctggtttgtgctctgtcaagaaagtatggaaaatgtcttgcctcgtatacttgcgatgctatgcttaagcagcgattgaagaaggcctcgggagttttctgggaaagaaagaggaagggtgatctcgtcattgtgagagttggaatgaggagtgtcgagttcaaggttattgagactgatcattctgagtactgtgttgtagctccagaaattgaaatatttccaatagggtttactaaagtggctacagataagaattctaaagctggatcaaatgtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033612 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070647 GO:0070696 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

406

Amino Acids

45.52

Weight (kDa)

6.49

Isoelectric Point (pI)

40.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017727)

Species	Orthologous Gene IDs
malus_domestica	MD13G1262400.v1.1
rosa_laevigata	RLG00000016669 RLG00000018668
rosa_multiflora	Rmu_sc0001084.1_g000005 Rmu_sc0002712.1_g000014 Rmu_sc0003669.1_g000029 Rmu_sc0013561.1_g000001 Rmu_sc0032262.1_g000001
rosa_roxburghii	Rroxscaffold_4G00329150 Rroxscaffold_7G00176570
rosa_samantha	Rh3BG322900 Rh4DG243400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	508
AatII	GACGTC	1 cut(s)	346
AccI	GTMKAC	1 cut(s)	986
AccII	CGCG	4 cut(s)	89, 150, 525, 696
AciI	CCGC	5 cut(s)	164, 227, 318, 477, 562
AclWI	GGATC	3 cut(s)	503, 908, 1216
AcsI	RAATTY	3 cut(s)	590, 773, 1195
AcvI	CACGTG	1 cut(s)	353
AcyI	GRCGYC	1 cut(s)	343
AfaI	GTAC	1 cut(s)	1130
AfeI	AGCGCT	1 cut(s)	24
AfiI	CCNNNNNNNGG	1 cut(s)	268
AflII	CTTAAG	1 cut(s)	1004
AgsI	TTSAA	4 cut(s)	763, 1018, 1102, 1154
AjuI	GAANNNNNNNTTGG	2 cut(s)	575, 607
AluBI	AGCT	5 cut(s)	664, 742, 798, 1142, 1205
AluI	AGCT	5 cut(s)	664, 742, 798, 1142, 1205
Alw21I	GWGCWC	4 cut(s)	340, 352, 552, 952
Alw26I	GTCTC	3 cut(s)	705, 917, 1106
Alw44I	GTGCAC	1 cut(s)	336
AlwI	GGATC	3 cut(s)	503, 908, 1216
Ama87I	CYCGRG	3 cut(s)	26, 743, 1027
Aor51HI	AGCGCT	1 cut(s)	24
AoxI	GGCC	2 cut(s)	259, 1023
ApaLI	GTGCAC	1 cut(s)	336
ApeKI	GCWGC	4 cut(s)	401, 479, 564, 1009
ApoI	RAATTY	3 cut(s)	590, 773, 1195
Asp700I	GAANNNNTTC	3 cut(s)	690, 936, 1158
AspLEI	GCGC	3 cut(s)	13, 25, 527
AspS9I	GGNCC	3 cut(s)	260, 474, 510
AsuHPI	GGTGA	2 cut(s)	889, 1070
AvaI	CYCGRG	3 cut(s)	26, 743, 1027
AvaII	GGWCC	2 cut(s)	474, 510
BaeGI	GKGCMC	1 cut(s)	340
BbrPI	CACGTG	1 cut(s)	353
BbsI	GAAGAC	1 cut(s)	639
Bbv12I	GWGCWC	4 cut(s)	340, 352, 552, 952
BbvI	GCAGC	4 cut(s)	388, 466, 551, 1021
BccI	CCATC	3 cut(s)	124, 248, 366
BceAI	ACGGC	1 cut(s)	632
BclI	TGATCA	1 cut(s)	1117
BcoDI	GTCTC	3 cut(s)	705, 917, 1106
BfaI	CTAG	3 cut(s)	83, 653, 1219
BfmI	CTRYAG	2 cut(s)	402, 1185
BfoI	RGCGCY	2 cut(s)	14, 26
BfrI	CTTAAG	1 cut(s)	1004
BglII	AGATCT	1 cut(s)	406
BisI	GCNGC	6 cut(s)	165, 402, 480, 562, 565, 1010
BlsI	GCNGC	6 cut(s)	166, 403, 481, 563, 566, 1011
BmcAI	AGTACT	1 cut(s)	1130
Bme18I	GGWCC	2 cut(s)	474, 510
BmeT110I	CYCGRG	3 cut(s)	26, 743, 1027
BmgT120I	GGNCC	3 cut(s)	260, 474, 510
BmiI	GGNNCC	1 cut(s)	315
BmrI	ACTGGG	1 cut(s)	277
BmsI	GCATC	2 cut(s)	102, 985
BmuI	ACTGGG	1 cut(s)	277
BpiI	GAAGAC	1 cut(s)	639
BplI	GAGNNNNNCTC	2 cut(s)	119, 151
BpmI	CTGGAG	3 cut(s)	837, 847, 1128
BsaAI	YACGTR	1 cut(s)	353
BsaHI	GRCGYC	1 cut(s)	343
BsaI	GGTCTC	1 cut(s)	917
BsaJI	CCNNGG	2 cut(s)	483, 1026
BsaXI	ACNNNNNCTCC	4 cut(s)	702, 732, 794, 824
Bsc4I	CCNNNNNNNGG	1 cut(s)	268
Bse1I	ACTGG	3 cut(s)	272, 315, 830
Bse3DI	GCAATG	1 cut(s)	84
BseDI	CCNNGG	2 cut(s)	483, 1026
BseGI	GGATG	3 cut(s)	117, 259, 639
BseLI	CCNNNNNNNGG	1 cut(s)	268
BseMI	GCAATG	1 cut(s)	84
BseMII	CTCAG	2 cut(s)	150, 1116
BseNI	ACTGG	3 cut(s)	272, 315, 830
BseRI	GAGGAG	3 cut(s)	252, 638, 1102
BseSI	GKGCMC	1 cut(s)	340
BseXI	GCAGC	4 cut(s)	388, 466, 551, 1021
Bsh1236I	CGCG	4 cut(s)	89, 150, 525, 696
Bsh1285I	CGRYCG	1 cut(s)	231
BshFI	GGCC	2 cut(s)	261, 1025
BsiEI	CGRYCG	1 cut(s)	231
BsiHKAI	GWGCWC	4 cut(s)	340, 352, 552, 952
BsiHKCI	CYCGRG	3 cut(s)	26, 743, 1027
BslI	CCNNNNNNNGG	1 cut(s)	268
BsmAI	GTCTC	3 cut(s)	705, 917, 1106
BsmBI	CGTCTC	1 cut(s)	705
BsnI	GGCC	2 cut(s)	261, 1025
Bso31I	GGTCTC	1 cut(s)	917
BsoBI	CYCGRG	3 cut(s)	26, 743, 1027
Bsp1286I	GDGCHC	4 cut(s)	340, 352, 552, 952
Bsp143I	GATC	7 cut(s)	52, 406, 495, 900, 1060, 1117, 1208
Bsp19I	CCATGG	1 cut(s)	483
Bsp68I	TCGCGA	2 cut(s)	150, 696
BspACI	CCGC	5 cut(s)	164, 227, 318, 477, 562
BspANI	GGCC	2 cut(s)	261, 1025
BspCNI	CTCAG	2 cut(s)	149, 1117
BspFNI	CGCG	4 cut(s)	89, 150, 525, 696
BspLI	GGNNCC	1 cut(s)	315
BspMAI	CTGCAG	1 cut(s)	406
BspPI	GGATC	3 cut(s)	503, 908, 1216
BspTI	CTTAAG	1 cut(s)	1004
BspTNI	GGTCTC	1 cut(s)	917
BsrDI	GCAATG	1 cut(s)	84
BsrI	ACTGG	3 cut(s)	272, 315, 830
BssECI	CCNNGG	2 cut(s)	483, 1026
BssMI	GATC	7 cut(s)	52, 406, 495, 900, 1060, 1117, 1208
BssNAI	GTATAC	1 cut(s)	987
BssNI	GRCGYC	1 cut(s)	343
BssT1I	CCWWGG	1 cut(s)	483
Bst1107I	GTATAC	1 cut(s)	987
Bst4CI	ACNGT	4 cut(s)	158, 171, 770, 1133
BstACI	GRCGYC	1 cut(s)	343
BstAFI	CTTAAG	1 cut(s)	1004
BstBAI	YACGTR	1 cut(s)	353
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	2 cut(s)	136, 1125
BstDSI	CCRYGG	1 cut(s)	483
BstF5I	GGATG	3 cut(s)	117, 259, 639
BstFNI	CGCG	4 cut(s)	89, 150, 525, 696
BstH2I	RGCGCY	2 cut(s)	14, 26
BstHHI	GCGC	3 cut(s)	13, 25, 527
BstKTI	GATC	7 cut(s)	55, 409, 498, 903, 1063, 1120, 1211
BstMAI	GTCTC	3 cut(s)	705, 917, 1106
BstMBI	GATC	7 cut(s)	52, 406, 495, 900, 1060, 1117, 1208
BstMCI	CGRYCG	1 cut(s)	231
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 180, 373, 485, 1009
BstSFI	CTRYAG	2 cut(s)	402, 1185
BstSLI	GKGCMC	1 cut(s)	340
BstUI	CGCG	4 cut(s)	89, 150, 525, 696
BstV1I	GCAGC	4 cut(s)	388, 466, 551, 1021
BstV2I	GAAGAC	1 cut(s)	639
BstX2I	RGATCY	3 cut(s)	406, 495, 900
BstYI	RGATCY	3 cut(s)	406, 495, 900
BstZ17I	GTATAC	1 cut(s)	987
BsuRI	GGCC	2 cut(s)	261, 1025
BtgI	CCRYGG	1 cut(s)	483
BtgZI	GCGATG	1 cut(s)	1008
BtsCI	GGATG	3 cut(s)	117, 259, 639
BtsI	GCAGTG	2 cut(s)	383, 495
BtsIMutI	CAGTG	5 cut(s)	167, 308, 383, 495, 600
BtuMI	TCGCGA	2 cut(s)	150, 696
Cac8I	GCNNGC	1 cut(s)	210
CfoI	GCGC	3 cut(s)	13, 25, 527
Cfr13I	GGNCC	3 cut(s)	260, 474, 510
CseI	GACGC	2 cut(s)	95, 448
Csp6I	GTAC	1 cut(s)	1129
CviAII	CATG	1 cut(s)	484
CviQI	GTAC	1 cut(s)	1129
DdeI	CTNAG	2 cut(s)	136, 1125
DpnI	GATC	7 cut(s)	54, 408, 497, 902, 1062, 1119, 1210
DpnII	GATC	7 cut(s)	52, 406, 495, 900, 1060, 1117, 1208
DraI	TTTAAA	1 cut(s)	19
DrdI	GACNNNNNNGTC	1 cut(s)	508
DseDI	GACNNNNNNGTC	1 cut(s)	508
Eco130I	CCWWGG	1 cut(s)	483
Eco147I	AGGCCT	1 cut(s)	1025
Eco31I	GGTCTC	1 cut(s)	917
Eco47I	GGWCC	2 cut(s)	474, 510
Eco47III	AGCGCT	1 cut(s)	24
Eco72I	CACGTG	1 cut(s)	353
Eco88I	CYCGRG	3 cut(s)	26, 743, 1027
EcoRI	GAATTC	1 cut(s)	1195
EcoT14I	CCWWGG	1 cut(s)	483
ErhI	CCWWGG	1 cut(s)	483
Esp3I	CGTCTC	1 cut(s)	705
FaeI	CATG	1 cut(s)	487
FalI	AAGNNNNNCTT	2 cut(s)	782, 814
FatI	CATG	1 cut(s)	483
FauI	CCCGC	1 cut(s)	325
FauNDI	CATATG	1 cut(s)	186
FbaI	TGATCA	1 cut(s)	1117
FblI	GTMKAC	1 cut(s)	986
Fnu4HI	GCNGC	6 cut(s)	165, 402, 480, 562, 565, 1010
FokI	GGATG	3 cut(s)	124, 266, 626
Fsp4HI	GCNGC	6 cut(s)	165, 402, 480, 562, 565, 1010
FspBI	CTAG	3 cut(s)	83, 653, 1219
GlaI	GCGC	3 cut(s)	12, 24, 526
GluI	GCNGC	6 cut(s)	165, 402, 480, 562, 565, 1010
GsuI	CTGGAG	3 cut(s)	837, 847, 1128
HaeII	RGCGCY	2 cut(s)	14, 26
HaeIII	GGCC	2 cut(s)	261, 1025
HgaI	GACGC	2 cut(s)	95, 448
HhaI	GCGC	3 cut(s)	13, 25, 527
Hin1I	GRCGYC	1 cut(s)	343
Hin1II	CATG	1 cut(s)	487
Hin6I	GCGC	3 cut(s)	11, 23, 525
HinP1I	GCGC	3 cut(s)	11, 23, 525
HincII	GTYRAC	2 cut(s)	144, 823
HindII	GTYRAC	2 cut(s)	144, 823
HinfI	GANTC	8 cut(s)	44, 134, 145, 218, 303, 656, 691, 698
HphI	GGTGA	2 cut(s)	889, 1070
Hpy166II	GTNNAC	6 cut(s)	144, 338, 598, 823, 987, 1173
Hpy188I	TCNGA	6 cut(s)	139, 295, 465, 710, 868, 1126
Hpy188III	TCNNGA	9 cut(s)	149, 410, 499, 653, 695, 816, 957, 1029, 1145
Hpy8I	GTNNAC	6 cut(s)	144, 338, 598, 823, 987, 1173
Hpy99I	CGWCG	4 cut(s)	98, 345, 348, 542
HpyAV	CCTTC	7 cut(s)	63, 217, 238, 244, 523, 1015, 1048
HpyCH4III	ACNGT	4 cut(s)	158, 171, 770, 1133
HpyCH4IV	ACGT	2 cut(s)	343, 352
HpyCH4V	TGCA	4 cut(s)	174, 338, 404, 675
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 180, 373, 485, 1009
HpyF3I	CTNAG	2 cut(s)	136, 1125
HpySE526I	ACGT	2 cut(s)	343, 352
Hsp92I	GRCGYC	1 cut(s)	343
Hsp92II	CATG	1 cut(s)	487
HspAI	GCGC	3 cut(s)	11, 23, 525
Ksp22I	TGATCA	1 cut(s)	1117
Kzo9I	GATC	7 cut(s)	52, 406, 495, 900, 1060, 1117, 1208
LmnI	GCTCC	2 cut(s)	860, 1147
Lsp1109I	GCAGC	4 cut(s)	388, 466, 551, 1021
LweI	GCATC	2 cut(s)	102, 985
MaeI	CTAG	3 cut(s)	83, 653, 1219
MaeII	ACGT	2 cut(s)	343, 352
MalI	GATC	7 cut(s)	54, 408, 497, 902, 1062, 1119, 1210
MboI	GATC	7 cut(s)	52, 406, 495, 900, 1060, 1117, 1208
MboII	GAAGA	3 cut(s)	644, 775, 1030
MflI	RGATCY	3 cut(s)	406, 495, 900
MhlI	GDGCHC	4 cut(s)	340, 352, 552, 952
MluCI	AATT	5 cut(s)	590, 773, 850, 1149, 1195
MlyI	GAGTC	4 cut(s)	128, 139, 227, 707
MmeI	TCCRAC	1 cut(s)	1060
MroXI	GAANNNNTTC	3 cut(s)	690, 936, 1158
MseI	TTAA	5 cut(s)	18, 32, 735, 849, 1005
MslI	CAYNNNNRTG	1 cut(s)	488
MspA1I	CMGCKG	2 cut(s)	479, 564
MspCI	CTTAAG	1 cut(s)	1004
MvnI	CGCG	4 cut(s)	89, 150, 525, 696
MwoI	GCNNNNNNNGC	5 cut(s)	10, 180, 373, 485, 1009
NcoI	CCATGG	1 cut(s)	483
NdeI	CATATG	1 cut(s)	186
NdeII	GATC	7 cut(s)	52, 406, 495, 900, 1060, 1117, 1208
NlaIII	CATG	1 cut(s)	487
NlaIV	GGNNCC	1 cut(s)	315
NmeAIII	GCCGAG	1 cut(s)	645
NruI	TCGCGA	2 cut(s)	150, 696
PaeR7I	CTCGAG	1 cut(s)	743
PceI	AGGCCT	1 cut(s)	1025
PcsI	WCGNNNNNNNCGW	4 cut(s)	93, 349, 358, 627
PdmI	GAANNNNTTC	3 cut(s)	690, 936, 1158
PfeI	GAWTC	4 cut(s)	44, 303, 656, 691
PkrI	GCNGC	6 cut(s)	166, 403, 481, 563, 566, 1011
PleI	GAGTC	4 cut(s)	128, 139, 226, 706
PmaCI	CACGTG	1 cut(s)	353
PmlI	CACGTG	1 cut(s)	353
PpsI	GAGTC	4 cut(s)	128, 139, 226, 706
Ppu21I	YACGTR	1 cut(s)	353
PspCI	CACGTG	1 cut(s)	353
PspN4I	GGNNCC	1 cut(s)	315
PspPI	GGNCC	3 cut(s)	260, 474, 510
PspXI	VCTCGAGB	1 cut(s)	743
PstI	CTGCAG	1 cut(s)	406
PsuI	RGATCY	3 cut(s)	406, 495, 900
RruI	TCGCGA	2 cut(s)	150, 696
RsaI	GTAC	1 cut(s)	1130
RsaNI	GTAC	1 cut(s)	1129
RseI	CAYNNNNRTG	1 cut(s)	488
SaqAI	TTAA	5 cut(s)	18, 32, 735, 849, 1005
SatI	GCNGC	6 cut(s)	165, 402, 480, 562, 565, 1010
Sau3AI	GATC	7 cut(s)	52, 406, 495, 900, 1060, 1117, 1208
Sau96I	GGNCC	3 cut(s)	260, 474, 510
ScaI	AGTACT	1 cut(s)	1130
SchI	GAGTC	4 cut(s)	128, 139, 227, 707
SduI	GDGCHC	4 cut(s)	340, 352, 552, 952
SfaNI	GCATC	2 cut(s)	102, 985
SfcI	CTRYAG	2 cut(s)	402, 1185
Sfr274I	CTCGAG	1 cut(s)	743
SinI	GGWCC	2 cut(s)	474, 510
SlaI	CTCGAG	1 cut(s)	743
SmiMI	CAYNNNNRTG	1 cut(s)	488
SmlI	CTYRAG	2 cut(s)	743, 1004
SmoI	CTYRAG	2 cut(s)	743, 1004
Sse9I	AATT	5 cut(s)	590, 773, 850, 1149, 1195
SseBI	AGGCCT	1 cut(s)	1025
SsiI	CCGC	5 cut(s)	164, 227, 318, 477, 562
SspI	AATATT	1 cut(s)	1158
SspMI	CTAG	3 cut(s)	83, 653, 1219
StuI	AGGCCT	1 cut(s)	1025
StyI	CCWWGG	1 cut(s)	483
TaaI	ACNGT	4 cut(s)	158, 171, 770, 1133
TaiI	ACGT	2 cut(s)	346, 355
TaqI	TCGA	8 cut(s)	191, 221, 346, 431, 621, 659, 744, 1095
TasI	AATT	5 cut(s)	590, 773, 850, 1149, 1195
TatI	WGTACW	1 cut(s)	1128
TauI	GCSGC	2 cut(s)	167, 564
TfiI	GAWTC	4 cut(s)	44, 303, 656, 691
Tru1I	TTAA	5 cut(s)	18, 32, 735, 849, 1005
Tru9I	TTAA	5 cut(s)	18, 32, 735, 849, 1005
TscAI	CASTG	5 cut(s)	174, 315, 383, 495, 607
TseI	GCWGC	4 cut(s)	401, 479, 564, 1009
TspDTI	ATGAA	1 cut(s)	505
TspRI	CASTG	5 cut(s)	174, 315, 383, 495, 607
Vha464I	CTTAAG	1 cut(s)	1004
VneI	GTGCAC	1 cut(s)	336
VpaK11BI	GGWCC	2 cut(s)	474, 510
XapI	RAATTY	3 cut(s)	590, 773, 1195
XbaI	TCTAGA	1 cut(s)	652
XhoI	CTCGAG	1 cut(s)	743
XmiI	GTMKAC	1 cut(s)	986
XmnI	GAANNNNTTC	3 cut(s)	690, 936, 1158
XspI	CTAG	3 cut(s)	83, 653, 1219
ZraI	GACGTC	1 cut(s)	344
ZrmI	AGTACT	1 cut(s)	1130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.