Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013561.1

Orthogroup ID

OG0017727

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 607

Gene Structure 607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013561.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 247 bp

tccttcatctcttcggcatcgacgacgcctgggaagacgacaacgaagacgtcctcatcgactcccgctgctgccctccccctgccaaacccaaattcgtggacgccaaccccgtgttgtgctctgaggaggacgaggacatcacccaggccgttctagacagcgtcgttccgttttactctctcgaatcgaagctcggggacaagagagcggtggcgattcggcgcgagtggcttcagagaacgac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005783 GO:0005789 GO:0009526 GO:0009536 GO:0012505 GO:0016020 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0031984 GO:0042170 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04152 ko04976 map00900 map01100 map01110 map01130 map04152 map04976

Pfam Domains

Protein Families

HMG-CoA_red

Protein Analysis

82

Amino Acids

9.3

Weight (kDa)

4.32

Isoelectric Point (pI)

62.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017727)

Species	Orthologous Gene IDs
malus_domestica	MD13G1262400.v1.1
rosa_laevigata	RLG00000016669 RLG00000018668
rosa_multiflora	Rmu_sc0001084.1_g000005 Rmu_sc0002712.1_g000014 Rmu_sc0003669.1_g000029 Rmu_sc0013561.1_g000001 Rmu_sc0032262.1_g000001
rosa_roxburghii	Rroxscaffold_4G00329150 Rroxscaffold_7G00176570
rosa_samantha	Rh3BG322900 Rh4DG243400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	53
AccBSI	CCGCTC	1 cut(s)	211
AccII	CGCG	1 cut(s)	227
AciI	CCGC	2 cut(s)	66, 211
AcsI	RAATTY	1 cut(s)	94
AcuI	CTGAAG	1 cut(s)	220
AcyI	GRCGYC	3 cut(s)	26, 50, 104
AjnI	CCWGG	2 cut(s)	28, 146
AjuI	GAANNNNNNNTTGG	2 cut(s)	79, 111
AluBI	AGCT	1 cut(s)	195
AluI	AGCT	1 cut(s)	195
Alw21I	GWGCWC	1 cut(s)	124
Ama87I	CYCGRG	1 cut(s)	196
AoxI	GGCC	1 cut(s)	149
ApeKI	GCWGC	2 cut(s)	68, 71
ApoI	RAATTY	1 cut(s)	94
AspLEI	GCGC	1 cut(s)	227
AsuHPI	GGTGA	1 cut(s)	135
AvaI	CYCGRG	1 cut(s)	196
BbsI	GAAGAC	2 cut(s)	41, 53
Bbv12I	GWGCWC	1 cut(s)	124
BbvI	GCAGC	2 cut(s)	55, 58
BceAI	ACGGC	1 cut(s)	136
BciT130I	CCWGG	2 cut(s)	30, 148
BfaI	CTAG	1 cut(s)	157
BisI	GCNGC	2 cut(s)	69, 72
BlsI	GCNGC	2 cut(s)	70, 73
Bme1390I	CCNGG	2 cut(s)	30, 148
BmeT110I	CYCGRG	1 cut(s)	196
BmrFI	CCNGG	2 cut(s)	30, 148
BmsI	GCATC	1 cut(s)	26
BpiI	GAAGAC	2 cut(s)	41, 53
BsaHI	GRCGYC	3 cut(s)	26, 50, 104
BsaJI	CCNNGG	2 cut(s)	29, 146
BseBI	CCWGG	2 cut(s)	30, 148
BseDI	CCNNGG	2 cut(s)	29, 146
BseMII	CTCAG	1 cut(s)	116
BseRI	GAGGAG	1 cut(s)	142
BseXI	GCAGC	2 cut(s)	55, 58
Bsh1236I	CGCG	1 cut(s)	227
BshFI	GGCC	1 cut(s)	151
BsiHKAI	GWGCWC	1 cut(s)	124
BsiHKCI	CYCGRG	1 cut(s)	196
BslFI	GGGAC	1 cut(s)	214
BsmFI	GGGAC	1 cut(s)	214
BsnI	GGCC	1 cut(s)	151
BsoBI	CYCGRG	1 cut(s)	196
Bsp1286I	GDGCHC	1 cut(s)	124
BspACI	CCGC	2 cut(s)	66, 211
BspANI	GGCC	1 cut(s)	151
BspCNI	CTCAG	1 cut(s)	117
BspFNI	CGCG	1 cut(s)	227
BsrBI	CCGCTC	1 cut(s)	211
BssECI	CCNNGG	2 cut(s)	29, 146
BssNI	GRCGYC	3 cut(s)	26, 50, 104
Bst2UI	CCWGG	2 cut(s)	30, 148
Bst6I	CTCTTC	1 cut(s)	16
BstACI	GRCGYC	3 cut(s)	26, 50, 104
BstDEI	CTNAG	1 cut(s)	125
BstFNI	CGCG	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	227
BstMWI	GCNNNNNNNGC	1 cut(s)	231
BstNI	CCWGG	2 cut(s)	30, 148
BstSCI	CCNGG	2 cut(s)	28, 146
BstUI	CGCG	1 cut(s)	227
BstV1I	GCAGC	2 cut(s)	55, 58
BstV2I	GAAGAC	2 cut(s)	41, 53
BstXI	CCANNNNNNTGG	1 cut(s)	99
BsuRI	GGCC	1 cut(s)	151
CfoI	GCGC	1 cut(s)	227
CseI	GACGC	3 cut(s)	34, 112, 153
CviJI	RGCY	3 cut(s)	151, 195, 234
CviKI_1	RGCY	3 cut(s)	151, 195, 234
DdeI	CTNAG	1 cut(s)	125
Eam1104I	CTCTTC	1 cut(s)	16
EarI	CTCTTC	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	220
Eco88I	CYCGRG	1 cut(s)	196
EcoRII	CCWGG	2 cut(s)	28, 146
FaqI	GGGAC	1 cut(s)	214
FauI	CCCGC	1 cut(s)	73
Fnu4HI	GCNGC	2 cut(s)	69, 72
Fsp4HI	GCNGC	2 cut(s)	69, 72
FspBI	CTAG	1 cut(s)	157
GlaI	GCGC	1 cut(s)	226
GluI	GCNGC	2 cut(s)	69, 72
HaeIII	GGCC	1 cut(s)	151
HgaI	GACGC	3 cut(s)	34, 112, 153
HhaI	GCGC	1 cut(s)	227
Hin1I	GRCGYC	3 cut(s)	26, 50, 104
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HinfI	GANTC	3 cut(s)	61, 187, 219
HphI	GGTGA	1 cut(s)	135
Hpy166II	GTNNAC	1 cut(s)	102
Hpy188I	TCNGA	2 cut(s)	126, 239
Hpy188III	TCNNGA	2 cut(s)	157, 184
Hpy8I	GTNNAC	1 cut(s)	102
Hpy99I	CGWCG	3 cut(s)	25, 28, 169
HpyAV	CCTTC	1 cut(s)	13
HpyCH4IV	ACGT	1 cut(s)	50
HpyF10VI	GCNNNNNNNGC	1 cut(s)	231
HpyF3I	CTNAG	1 cut(s)	125
HpySE526I	ACGT	1 cut(s)	50
Hsp92I	GRCGYC	3 cut(s)	26, 50, 104
HspAI	GCGC	1 cut(s)	225
LpnPI	CCDG	5 cut(s)	15, 42, 95, 133, 160
Lsp1109I	GCAGC	2 cut(s)	55, 58
LweI	GCATC	1 cut(s)	26
MaeI	CTAG	1 cut(s)	157
MaeII	ACGT	1 cut(s)	50
MbiI	CCGCTC	1 cut(s)	211
MboII	GAAGA	3 cut(s)	3, 46, 58
MhlI	GDGCHC	1 cut(s)	124
MluCI	AATT	1 cut(s)	94
MlyI	GAGTC	1 cut(s)	55
MnlI	CCTC	5 cut(s)	64, 86, 120, 123, 129
MspA1I	CMGCKG	1 cut(s)	68
MspR9I	CCNGG	2 cut(s)	30, 148
MvaI	CCWGG	2 cut(s)	30, 148
MvnI	CGCG	1 cut(s)	227
MwoI	GCNNNNNNNGC	1 cut(s)	231
PcsI	WCGNNNNNNNCGW	3 cut(s)	20, 56, 110
PfeI	GAWTC	2 cut(s)	187, 219
PflFI	GACNNNGTC	1 cut(s)	163
PkrI	GCNGC	2 cut(s)	70, 73
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
Psp6I	CCWGG	2 cut(s)	28, 146
PspGI	CCWGG	2 cut(s)	28, 146
PsyI	GACNNNGTC	1 cut(s)	163
SatI	GCNGC	2 cut(s)	69, 72
SchI	GAGTC	1 cut(s)	55
ScrFI	CCNGG	2 cut(s)	30, 148
SduI	GDGCHC	1 cut(s)	124
SetI	ASST	2 cut(s)	53, 197
SfaNI	GCATC	1 cut(s)	26
Sse9I	AATT	1 cut(s)	94
SsiI	CCGC	2 cut(s)	66, 211
SspMI	CTAG	1 cut(s)	157
StyD4I	CCNGG	2 cut(s)	28, 146
TaiI	ACGT	1 cut(s)	53
TaqI	TCGA	4 cut(s)	20, 59, 185, 190
TasI	AATT	1 cut(s)	94
TfiI	GAWTC	2 cut(s)	187, 219
TseI	GCWGC	2 cut(s)	68, 71
TspGWI	ACGGA	1 cut(s)	161
Tth111I	GACNNNGTC	1 cut(s)	163
XapI	RAATTY	1 cut(s)	94
XbaI	TCTAGA	1 cut(s)	156
XspI	CTAG	1 cut(s)	157
ZraI	GACGTC	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.