Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0017727

Physical Location & Seq

Genomic Coordinates Forward (+)

45455168 .. 45455401

Gene Structure 234 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG243400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGATTCTGGCGCTGTTTAAAGCGCTCGGGTTAAGTATTGTTGATTCTGTTGATCTCTGTGGCGAGGGAAGGTGGGCAATGCTAGACGCGAATGACGAGTATTTGGTGGGGATGCTGATGAGGAACGAGATGGACTCAGAGTTGACTCGCGAGAACTGTGTGGCGGCACTGTGCACATTGAGCCATATGTCGATAAGGTTCTGGGGGCTGGCGAGGGAGTCGAAGGCGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033612 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070647 GO:0070696 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

77

Amino Acids

8.58

Weight (kDa)

4.72

Isoelectric Point (pI)

26.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017727)

Species	Orthologous Gene IDs
malus_domestica	MD13G1262400.v1.1
rosa_laevigata	RLG00000016669 RLG00000018668
rosa_multiflora	Rmu_sc0001084.1_g000005 Rmu_sc0002712.1_g000014 Rmu_sc0003669.1_g000029 Rmu_sc0013561.1_g000001 Rmu_sc0032262.1_g000001
rosa_roxburghii	Rroxscaffold_4G00329150 Rroxscaffold_7G00176570
rosa_samantha	Rh3BG322900 Rh4DG243400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	89, 150
AciI	CCGC	2 cut(s)	164, 227
AfeI	AGCGCT	1 cut(s)	24
Alw21I	GWGCWC	1 cut(s)	176
Alw44I	GTGCAC	1 cut(s)	172
Ama87I	CYCGRG	1 cut(s)	26
Aor51HI	AGCGCT	1 cut(s)	24
ApaLI	GTGCAC	1 cut(s)	172
AspLEI	GCGC	2 cut(s)	13, 25
AvaI	CYCGRG	1 cut(s)	26
BaeGI	GKGCMC	1 cut(s)	176
Bbv12I	GWGCWC	1 cut(s)	176
BccI	CCATC	1 cut(s)	124
BfaI	CTAG	1 cut(s)	83
BfoI	RGCGCY	2 cut(s)	14, 26
BisI	GCNGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	166
BmeT110I	CYCGRG	1 cut(s)	26
BmsI	GCATC	1 cut(s)	102
BplI	GAGNNNNNCTC	2 cut(s)	119, 151
Bse3DI	GCAATG	1 cut(s)	84
BseGI	GGATG	1 cut(s)	117
BseMI	GCAATG	1 cut(s)	84
BseMII	CTCAG	1 cut(s)	150
BseSI	GKGCMC	1 cut(s)	176
Bsh1236I	CGCG	2 cut(s)	89, 150
BsiHKAI	GWGCWC	1 cut(s)	176
BsiHKCI	CYCGRG	1 cut(s)	26
BsoBI	CYCGRG	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	176
Bsp143I	GATC	1 cut(s)	52
Bsp68I	TCGCGA	1 cut(s)	150
BspACI	CCGC	2 cut(s)	164, 227
BspCNI	CTCAG	1 cut(s)	149
BspFNI	CGCG	2 cut(s)	89, 150
BsrDI	GCAATG	1 cut(s)	84
BssMI	GATC	1 cut(s)	52
Bst4CI	ACNGT	2 cut(s)	158, 171
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	1 cut(s)	136
BstF5I	GGATG	1 cut(s)	117
BstFNI	CGCG	2 cut(s)	89, 150
BstH2I	RGCGCY	2 cut(s)	14, 26
BstHHI	GCGC	2 cut(s)	13, 25
BstKTI	GATC	1 cut(s)	55
BstMBI	GATC	1 cut(s)	52
BstMWI	GCNNNNNNNGC	1 cut(s)	180
BstSLI	GKGCMC	1 cut(s)	176
BstUI	CGCG	2 cut(s)	89, 150
BtsCI	GGATG	1 cut(s)	117
BtsIMutI	CAGTG	1 cut(s)	167
BtuMI	TCGCGA	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	210
CfoI	GCGC	2 cut(s)	13, 25
CseI	GACGC	1 cut(s)	95
CviJI	RGCY	2 cut(s)	183, 208
CviKI_1	RGCY	2 cut(s)	183, 208
DdeI	CTNAG	1 cut(s)	136
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
DraI	TTTAAA	1 cut(s)	19
Eco47III	AGCGCT	1 cut(s)	24
Eco88I	CYCGRG	1 cut(s)	26
FaiI	YATR	2 cut(s)	186, 188
FauNDI	CATATG	1 cut(s)	186
Fnu4HI	GCNGC	1 cut(s)	165
FokI	GGATG	1 cut(s)	124
Fsp4HI	GCNGC	1 cut(s)	165
FspBI	CTAG	1 cut(s)	83
GlaI	GCGC	2 cut(s)	12, 24
GluI	GCNGC	1 cut(s)	165
HaeII	RGCGCY	2 cut(s)	14, 26
HgaI	GACGC	1 cut(s)	95
HhaI	GCGC	2 cut(s)	13, 25
Hin6I	GCGC	2 cut(s)	11, 23
HinP1I	GCGC	2 cut(s)	11, 23
HincII	GTYRAC	1 cut(s)	144
HindII	GTYRAC	1 cut(s)	144
HinfI	GANTC	5 cut(s)	4, 44, 134, 145, 218
Hpy166II	GTNNAC	2 cut(s)	144, 174
Hpy188I	TCNGA	1 cut(s)	139
Hpy188III	TCNNGA	1 cut(s)	149
Hpy8I	GTNNAC	2 cut(s)	144, 174
HpyAV	CCTTC	2 cut(s)	63, 217
HpyCH4III	ACNGT	2 cut(s)	158, 171
HpyCH4V	TGCA	1 cut(s)	174
HpyF10VI	GCNNNNNNNGC	1 cut(s)	180
HpyF3I	CTNAG	1 cut(s)	136
HspAI	GCGC	2 cut(s)	11, 23
Kzo9I	GATC	1 cut(s)	52
LpnPI	CCDG	2 cut(s)	187, 194
LweI	GCATC	1 cut(s)	102
MaeI	CTAG	1 cut(s)	83
MalI	GATC	1 cut(s)	54
MboI	GATC	1 cut(s)	52
MhlI	GDGCHC	1 cut(s)	176
MlyI	GAGTC	3 cut(s)	128, 139, 227
MnlI	CCTC	3 cut(s)	58, 114, 207
MseI	TTAA	2 cut(s)	18, 32
MvnI	CGCG	2 cut(s)	89, 150
MwoI	GCNNNNNNNGC	1 cut(s)	180
NdeI	CATATG	1 cut(s)	186
NdeII	GATC	1 cut(s)	52
NruI	TCGCGA	1 cut(s)	150
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PfeI	GAWTC	2 cut(s)	4, 44
PkrI	GCNGC	1 cut(s)	166
PleI	GAGTC	3 cut(s)	128, 139, 226
PpsI	GAGTC	3 cut(s)	128, 139, 226
RruI	TCGCGA	1 cut(s)	150
SaqAI	TTAA	2 cut(s)	18, 32
SatI	GCNGC	1 cut(s)	165
Sau3AI	GATC	1 cut(s)	52
SchI	GAGTC	3 cut(s)	128, 139, 227
SduI	GDGCHC	1 cut(s)	176
SetI	ASST	2 cut(s)	74, 200
SfaNI	GCATC	1 cut(s)	102
SsiI	CCGC	2 cut(s)	164, 227
SspMI	CTAG	1 cut(s)	83
TaaI	ACNGT	2 cut(s)	158, 171
TaqI	TCGA	2 cut(s)	191, 221
TauI	GCSGC	1 cut(s)	167
TfiI	GAWTC	2 cut(s)	4, 44
Tru1I	TTAA	2 cut(s)	18, 32
Tru9I	TTAA	2 cut(s)	18, 32
TscAI	CASTG	1 cut(s)	174
TspRI	CASTG	1 cut(s)	174
VneI	GTGCAC	1 cut(s)	172
XspI	CTAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.