Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0007308

Physical Location & Seq

Genomic Coordinates Forward (+)

7423982 .. 7425443

Gene Structure 1462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1068300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGCCTGAACTGGTCGAGCATCTCCGTAAATCGCGTCTCCTGCTGTGTATCTTTGTTGCATTCCTGTTAAATACTCTTGCGACTTCAGATATTCCCTTGGGTTCCAAAATTTCTGTAGCCGATAAAACCATATGGATCTCTCCAAATGGTGATTTTGCATTTGGATTTTTTAACCGTTCAGACCAGCCAAACTATAGTTTCGGGATCCGTCTCATTTCGAAGTCTTTTCCTCTTGACCAACAACTTTTGGTATGGAGTGCTGCAGCTGATCTTATTATTGGTAACAATTCTTATGCCCAGCTGACCCAGGATGGCGAACTAGTTTTATTCGATTCCTTGAAGGGTGTCACTGCATGGACCAGTAAAACAAGGCAATTATCAGTTGTTTCTGCTGCTCTTAATGACAATGGAAATCTTGTTCTATTGAATCAAGAGAAACATATTGTTTGGCAAAGTTTTGATACTCCATCTGACATACTTCTTCCTGGACAGAGCTTCTCTACATTGCAAACACTTCGAGCTGCAAGCAAGAATTGTGTGTCCAGTTACTACACTCTTTTTATGAGTGCTTCTAGTCAGTTGCAACTTCAATGGGAAAGCCATGTCACCTACTGGAGAAGTGGAAGCCTTTCTAGTTCAAACCTCAGTGCTTTCATCACTTCTGATGGAGCCCTACAACTCCGCGACCAAAGCTTGAAACCTGTGTGGTCACTGTACAGTCAAGATCACAATGACTCCATAAGCTACAGGTTTCTTAGGCTAGATGTTGATGGTAATCTCCGATTATACTCATGGGTAGAAGATTCAAAGTCATGGAGATCAGTCTGGCAGGCTGTTGAGAACCAGTGTGATGTCTTTGCAACCTGTGGCCAACGTGGTATCTGTGTCTTCAATGAATCTGGGTCCCCTGATTGCGAATGTCCATTTAAGCAGCAGACAAATGAGTCCACTTCCAGATGTTTTATTCCAAATAATCGCTGTTTTCTTTTGGTTCCAACATGCTTCATTATAAGCATACTTTCCTACATGGAATGTACCCACCAACTGATGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_1 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

352

Amino Acids

39.53

Weight (kDa)

5.56

Isoelectric Point (pI)

44.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	84 - 169	6.7e-16	D-mannose binding lectin
S_locus_glycop	PF00954	205 - 307	9.2e-14	S-locus glycoprotein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41890
fragaria_vesca	FvH4_6g26380 FvH4_6g26380
malus_domestica	MD12G1068200.v1.1 MD14G1068300.v1.1 MD14G1068400.v1.1 MD14G1068600.v1.1 MD14G1068700.v1.1 MD14G1069000.v1.1
prunus_persica	Prupe.7G065700_v2.0.a1 Prupe.7G065700_v2.0.a1 Prupe.7G065700_v2.0.a1 Prupe.7G065700_v2.0.a1
pyrus_communis	pycom12g06020 pycom14g05640
rosa_chinensis	RchiOBHm_Chr2g0126871
rosa_laevigata	RLG00000018924
rosa_multiflora	Rmu_sc0000007.1_g000026
rosa_roxburghii	Rroxscaffold_2G00116950
rosa_rugosa	Rorug02G0270000
rosa_samantha	Rh2AG322100 Rh2BG330300 Rh2CG310200 Rh2DG349600
rosa_wichuraiana	Rw2G026120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1010
AasI	GACNNNNNNGTC	1 cut(s)	943
AccII	CGCG	2 cut(s)	34, 684
AciI	CCGC	1 cut(s)	682
AclWI	GGATC	3 cut(s)	143, 199, 212
AcoI	YGGCCR	1 cut(s)	868
AcsI	RAATTY	1 cut(s)	108
AcuI	CTGAAG	1 cut(s)	69
AfaI	GTAC	2 cut(s)	716, 1036
AgsI	TTSAA	7 cut(s)	340, 427, 590, 639, 697, 807, 892
AhlI	ACTAGT	1 cut(s)	319
AjnI	CCWGG	2 cut(s)	306, 484
AloI	GAACNNNNNNTCC	2 cut(s)	402, 434
AluBI	AGCT	6 cut(s)	266, 301, 495, 521, 693, 744
AluI	AGCT	6 cut(s)	266, 301, 495, 521, 693, 744
Alw26I	GTCTC	2 cut(s)	41, 215
AlwI	GGATC	3 cut(s)	143, 199, 212
AoxI	GGCC	1 cut(s)	868
ApeKI	GCWGC	5 cut(s)	260, 263, 392, 521, 931
ApoI	RAATTY	1 cut(s)	108
Asp700I	GAANNNNTTC	1 cut(s)	628
AspS9I	GGNCC	2 cut(s)	357, 903
AsuHPI	GGTGA	2 cut(s)	161, 598
AsuII	TTCGAA	1 cut(s)	218
AvaII	GGWCC	2 cut(s)	357, 903
BalI	TGGCCA	1 cut(s)	870
BamHI	GGATCC	1 cut(s)	204
BanII	GRGCYC	1 cut(s)	673
BbsI	GAAGAC	1 cut(s)	880
BbvI	GCAGC	5 cut(s)	247, 275, 379, 508, 943
BccI	CCATC	4 cut(s)	305, 475, 659, 764
BcgI	CGANNNNNNTGC	2 cut(s)	497, 531
BciT130I	CCWGG	2 cut(s)	308, 486
BcoDI	GTCTC	2 cut(s)	41, 215
BcuI	ACTAGT	1 cut(s)	319
BfaI	CTAG	4 cut(s)	320, 573, 633, 761
BfmI	CTRYAG	4 cut(s)	114, 193, 261, 745
BisI	GCNGC	5 cut(s)	261, 264, 393, 522, 932
BlsI	GCNGC	5 cut(s)	262, 265, 394, 523, 933
Bme1390I	CCNGG	2 cut(s)	308, 486
Bme18I	GGWCC	2 cut(s)	357, 903
BmgT120I	GGNCC	2 cut(s)	357, 903
BmiI	GGNNCC	6 cut(s)	103, 206, 670, 904, 905, 993
BmrFI	CCNGG	2 cut(s)	308, 486
BmsI	GCATC	1 cut(s)	28
BpiI	GAAGAC	1 cut(s)	880
BpmI	CTGGAG	1 cut(s)	634
Bpu14I	TTCGAA	1 cut(s)	218
BsaBI	GATNNNNATC	1 cut(s)	774
BsaJI	CCNNGG	2 cut(s)	96, 306
BsaXI	ACNNNNNCTCC	2 cut(s)	719, 749
Bse1I	ACTGG	5 cut(s)	15, 360, 543, 617, 844
Bse3DI	GCAATG	1 cut(s)	503
Bse8I	GATNNNNATC	1 cut(s)	774
BseBI	CCWGG	2 cut(s)	308, 486
BseDI	CCNNGG	2 cut(s)	96, 306
BseGI	GGATG	1 cut(s)	316
BseJI	GATNNNNATC	1 cut(s)	774
BseMI	GCAATG	1 cut(s)	503
BseMII	CTCAG	1 cut(s)	658
BseNI	ACTGG	5 cut(s)	15, 360, 543, 617, 844
BseXI	GCAGC	5 cut(s)	247, 275, 379, 508, 943
BseYI	CCCAGC	1 cut(s)	297
Bsh1236I	CGCG	2 cut(s)	34, 684
BshFI	GGCC	1 cut(s)	870
BslFI	GGGAC	1 cut(s)	889
BsmAI	GTCTC	2 cut(s)	41, 215
BsmBI	CGTCTC	2 cut(s)	41, 215
BsmFI	GGGAC	1 cut(s)	889
BsmI	GAATGC	1 cut(s)	59
BsnI	GGCC	1 cut(s)	870
Bsp119I	TTCGAA	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	673
Bsp1407I	TGTACA	1 cut(s)	714
Bsp143I	GATC	5 cut(s)	135, 204, 268, 724, 818
BspACI	CCGC	1 cut(s)	682
BspANI	GGCC	1 cut(s)	870
BspCNI	CTCAG	1 cut(s)	657
BspFNI	CGCG	2 cut(s)	34, 684
BspLI	GGNNCC	6 cut(s)	103, 206, 670, 904, 905, 993
BspMAI	CTGCAG	1 cut(s)	265
BspPI	GGATC	3 cut(s)	143, 199, 212
BspT104I	TTCGAA	1 cut(s)	218
BsrDI	GCAATG	1 cut(s)	503
BsrGI	TGTACA	1 cut(s)	714
BsrI	ACTGG	5 cut(s)	15, 360, 543, 617, 844
BssECI	CCNNGG	2 cut(s)	96, 306
BssMI	GATC	5 cut(s)	135, 204, 268, 724, 818
BssT1I	CCWWGG	1 cut(s)	96
Bst2UI	CCWGG	2 cut(s)	308, 486
Bst4CI	ACNGT	3 cut(s)	176, 714, 719
BstAUI	TGTACA	1 cut(s)	714
BstBI	TTCGAA	1 cut(s)	218
BstC8I	GCNNGC	2 cut(s)	526, 831
BstDEI	CTNAG	2 cut(s)	644, 755
BstF5I	GGATG	1 cut(s)	316
BstFNI	CGCG	2 cut(s)	34, 684
BstKTI	GATC	5 cut(s)	138, 207, 271, 727, 821
BstMAI	GTCTC	2 cut(s)	41, 215
BstMBI	GATC	5 cut(s)	135, 204, 268, 724, 818
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 690
BstNI	CCWGG	2 cut(s)	308, 486
BstNSI	RCATGY	1 cut(s)	1002
BstSCI	CCNGG	2 cut(s)	306, 484
BstSFI	CTRYAG	4 cut(s)	114, 193, 261, 745
BstUI	CGCG	2 cut(s)	34, 684
BstV1I	GCAGC	5 cut(s)	247, 275, 379, 508, 943
BstV2I	GAAGAC	1 cut(s)	880
BstX2I	RGATCY	2 cut(s)	135, 204
BstYI	RGATCY	2 cut(s)	135, 204
BsuRI	GGCC	1 cut(s)	870
BtsCI	GGATG	1 cut(s)	316
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	4 cut(s)	348, 652, 710, 851
Cac8I	GCNNGC	2 cut(s)	526, 831
Cfr13I	GGNCC	2 cut(s)	357, 903
CseI	GACGC	1 cut(s)	23
Csp6I	GTAC	2 cut(s)	715, 1035
CviAII	CATG	6 cut(s)	354, 602, 792, 813, 999, 1027
CviQI	GTAC	2 cut(s)	715, 1035
DdeI	CTNAG	2 cut(s)	644, 755
DpnI	GATC	5 cut(s)	137, 206, 270, 726, 820
DpnII	GATC	5 cut(s)	135, 204, 268, 724, 818
DrdI	GACNNNNNNGTC	1 cut(s)	943
DseDI	GACNNNNNNGTC	1 cut(s)	943
EaeI	YGGCCR	1 cut(s)	868
Eco130I	CCWWGG	1 cut(s)	96
Eco24I	GRGCYC	1 cut(s)	673
Eco47I	GGWCC	2 cut(s)	357, 903
Eco57I	CTGAAG	1 cut(s)	69
EcoO109I	RGGNCCY	1 cut(s)	903
EcoRII	CCWGG	2 cut(s)	306, 484
EcoT14I	CCWWGG	1 cut(s)	96
EcoT38I	GRGCYC	1 cut(s)	673
ErhI	CCWWGG	1 cut(s)	96
Esp3I	CGTCTC	2 cut(s)	41, 215
FaeI	CATG	6 cut(s)	357, 605, 795, 816, 1002, 1030
FaqI	GGGAC	1 cut(s)	889
FatI	CATG	6 cut(s)	353, 601, 791, 812, 998, 1026
FauNDI	CATATG	1 cut(s)	131
Fnu4HI	GCNGC	5 cut(s)	261, 264, 393, 522, 932
FokI	GGATG	1 cut(s)	323
FriOI	GRGCYC	1 cut(s)	673
Fsp4HI	GCNGC	5 cut(s)	261, 264, 393, 522, 932
FspBI	CTAG	4 cut(s)	320, 573, 633, 761
GluI	GCNGC	5 cut(s)	261, 264, 393, 522, 932
GsaI	CCCAGC	1 cut(s)	301
GsuI	CTGGAG	1 cut(s)	634
HaeIII	GGCC	1 cut(s)	870
HgaI	GACGC	1 cut(s)	23
Hin1II	CATG	6 cut(s)	357, 605, 795, 816, 1002, 1030
HindIII	AAGCTT	1 cut(s)	691
HinfI	GANTC	6 cut(s)	332, 427, 734, 803, 896, 944
HphI	GGTGA	2 cut(s)	161, 598
Hpy166II	GTNNAC	1 cut(s)	948
Hpy188I	TCNGA	5 cut(s)	88, 181, 472, 664, 782
Hpy188III	TCNNGA	5 cut(s)	202, 233, 431, 722, 954
Hpy8I	GTNNAC	1 cut(s)	948
HpyAV	CCTTC	1 cut(s)	334
HpyCH4III	ACNGT	3 cut(s)	176, 714, 719
HpyCH4IV	ACGT	1 cut(s)	874
HpyCH4V	TGCA	8 cut(s)	59, 158, 263, 353, 508, 524, 583, 860
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 690
HpyF3I	CTNAG	2 cut(s)	644, 755
HpySE526I	ACGT	1 cut(s)	874
Hsp92II	CATG	6 cut(s)	357, 605, 795, 816, 1002, 1030
KflI	GGGWCCC	1 cut(s)	903
Kzo9I	GATC	5 cut(s)	135, 204, 268, 724, 818
LmnI	GCTCC	1 cut(s)	668
Lsp1109I	GCAGC	5 cut(s)	247, 275, 379, 508, 943
LweI	GCATC	1 cut(s)	28
MaeI	CTAG	4 cut(s)	320, 573, 633, 761
MaeII	ACGT	1 cut(s)	874
MaeIII	GTNAC	5 cut(s)	281, 346, 545, 604, 708
MalI	GATC	5 cut(s)	137, 206, 270, 726, 820
MboI	GATC	5 cut(s)	135, 204, 268, 724, 818
MboII	GAAGA	3 cut(s)	473, 812, 880
MflI	RGATCY	2 cut(s)	135, 204
MhlI	GDGCHC	1 cut(s)	673
MlsI	TGGCCA	1 cut(s)	870
MluCI	AATT	4 cut(s)	108, 286, 374, 532
MluNI	TGGCCA	1 cut(s)	870
MlyI	GAGTC	2 cut(s)	728, 953
MmeI	TCCRAC	1 cut(s)	1019
MnlI	CCTC	2 cut(s)	240, 653
Mox20I	TGGCCA	1 cut(s)	870
MroXI	GAANNNNTTC	1 cut(s)	628
MscI	TGGCCA	1 cut(s)	870
MseI	TTAA	4 cut(s)	68, 171, 399, 927
Msp20I	TGGCCA	1 cut(s)	870
MspA1I	CMGCKG	2 cut(s)	266, 301
MspR9I	CCNGG	2 cut(s)	308, 486
Mva1269I	GAATGC	1 cut(s)	59
MvaI	CCWGG	2 cut(s)	308, 486
MvnI	CGCG	2 cut(s)	34, 684
MwoI	GCNNNNNNNGC	2 cut(s)	40, 690
NdeI	CATATG	1 cut(s)	131
NdeII	GATC	5 cut(s)	135, 204, 268, 724, 818
NlaIII	CATG	6 cut(s)	357, 605, 795, 816, 1002, 1030
NlaIV	GGNNCC	6 cut(s)	103, 206, 670, 904, 905, 993
NmuCI	GTSAC	3 cut(s)	346, 604, 708
NspI	RCATGY	1 cut(s)	1002
NspV	TTCGAA	1 cut(s)	218
PctI	GAATGC	1 cut(s)	59
PdmI	GAANNNNTTC	1 cut(s)	628
PfeI	GAWTC	4 cut(s)	332, 427, 803, 896
PfoI	TCCNGGA	1 cut(s)	484
PkrI	GCNGC	5 cut(s)	262, 265, 394, 523, 933
PleI	GAGTC	2 cut(s)	728, 952
PpsI	GAGTC	2 cut(s)	728, 952
PpuMI	RGGWCCY	1 cut(s)	903
PsiI	TTATAA	1 cut(s)	1010
Psp5II	RGGWCCY	1 cut(s)	903
Psp6I	CCWGG	2 cut(s)	306, 484
PspFI	CCCAGC	1 cut(s)	297
PspGI	CCWGG	2 cut(s)	306, 484
PspN4I	GGNNCC	6 cut(s)	103, 206, 670, 904, 905, 993
PspPI	GGNCC	2 cut(s)	357, 903
PspPPI	RGGWCCY	1 cut(s)	903
PstI	CTGCAG	1 cut(s)	265
PsuI	RGATCY	2 cut(s)	135, 204
PvuII	CAGCTG	2 cut(s)	266, 301
RsaI	GTAC	2 cut(s)	716, 1036
RsaNI	GTAC	2 cut(s)	715, 1035
SaqAI	TTAA	4 cut(s)	68, 171, 399, 927
SatI	GCNGC	5 cut(s)	261, 264, 393, 522, 932
Sau3AI	GATC	5 cut(s)	135, 204, 268, 724, 818
Sau96I	GGNCC	2 cut(s)	357, 903
SchI	GAGTC	2 cut(s)	728, 953
ScrFI	CCNGG	2 cut(s)	308, 486
SduI	GDGCHC	1 cut(s)	673
SfaNI	GCATC	1 cut(s)	28
SfcI	CTRYAG	4 cut(s)	114, 193, 261, 745
SfuI	TTCGAA	1 cut(s)	218
SinI	GGWCC	2 cut(s)	357, 903
SpeI	ACTAGT	1 cut(s)	319
Sse9I	AATT	4 cut(s)	108, 286, 374, 532
SsiI	CCGC	1 cut(s)	682
SspMI	CTAG	4 cut(s)	320, 573, 633, 761
StyD4I	CCNGG	2 cut(s)	306, 484
StyI	CCWWGG	1 cut(s)	96
TaaI	ACNGT	3 cut(s)	176, 714, 719
TaiI	ACGT	1 cut(s)	877
TaqI	TCGA	4 cut(s)	15, 218, 330, 517
TasI	AATT	4 cut(s)	108, 286, 374, 532
TatI	WGTACW	1 cut(s)	714
TfiI	GAWTC	4 cut(s)	332, 427, 803, 896
Tru1I	TTAA	4 cut(s)	68, 171, 399, 927
Tru9I	TTAA	4 cut(s)	68, 171, 399, 927
TscAI	CASTG	4 cut(s)	355, 652, 717, 851
TseFI	GTSAC	3 cut(s)	346, 604, 708
TseI	GCWGC	5 cut(s)	260, 263, 392, 521, 931
Tsp45I	GTSAC	3 cut(s)	346, 604, 708
TspDTI	ATGAA	3 cut(s)	643, 909, 994
TspGWI	ACGGA	2 cut(s)	14, 197
TspRI	CASTG	4 cut(s)	355, 652, 717, 851
VpaK11BI	GGWCC	2 cut(s)	357, 903
XapI	RAATTY	1 cut(s)	108
XceI	RCATGY	1 cut(s)	1002
XmnI	GAANNNNTTC	1 cut(s)	628
XspI	CTAG	4 cut(s)	320, 573, 633, 761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.