Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0007308

Physical Location & Seq

Genomic Coordinates Forward (+)

7469297 .. 7469919

Gene Structure 623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1068700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGTAATTCTCTTGTCAGCTGGACCTAGTATTTATAAAGCCTATCTTTTTTCCGTCTTCCGGCTGAGTTGCTGCATCGCATTTGGGATTAGTTCATTCCGTTTCCAGCTGCATTTTCCTTTTTCTTTGGTGCTTCTGAGAATTGGGTTTCGCCTTCAAGATTGGAAGCCCCTTTGTGAGTGGGCATACAAAGAGTGGCTGCAAGGGCATCCAGAGAATGTGGTAGACAGAAAAATAATTGGTGGGTTTATTCCACAAGAGCTTGAACGTGCTTTAAGAATTGCATTTTGGTGTGTCCAAATTGATGAACGTAGAAGACCTCCAATGAGAGAGGTGGTTAAGGTATTGGATAGCACCTTGAGCGTTGATCCACCACCACCCCCTTTTTCTTGTCAAGGGCCACGGGATGACGAAGAGGAGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_1 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

142

Amino Acids

16.4

Weight (kDa)

6.72

Isoelectric Point (pI)

48.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41890
fragaria_vesca	FvH4_6g26380 FvH4_6g26380
malus_domestica	MD12G1068200.v1.1 MD14G1068300.v1.1 MD14G1068400.v1.1 MD14G1068600.v1.1 MD14G1068700.v1.1 MD14G1069000.v1.1
prunus_persica	Prupe.7G065700_v2.0.a1 Prupe.7G065700_v2.0.a1 Prupe.7G065700_v2.0.a1 Prupe.7G065700_v2.0.a1
pyrus_communis	pycom12g06020 pycom14g05640
rosa_chinensis	RchiOBHm_Chr2g0126871
rosa_laevigata	RLG00000018924
rosa_multiflora	Rmu_sc0000007.1_g000026
rosa_roxburghii	Rroxscaffold_2G00116950
rosa_rugosa	Rorug02G0270000
rosa_samantha	Rh2AG322100 Rh2BG330300 Rh2CG310200 Rh2DG349600
rosa_wichuraiana	Rw2G026120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	36
AccI	GTMKAC	1 cut(s)	225
AclWI	GGATC	1 cut(s)	362
AfiI	CCNNNNNNNGG	1 cut(s)	60
AgsI	TTSAA	2 cut(s)	158, 266
AjuI	GAANNNNNNNTTGG	2 cut(s)	271, 303
AluBI	AGCT	3 cut(s)	20, 109, 262
AluI	AGCT	3 cut(s)	20, 109, 262
AlwI	GGATC	1 cut(s)	362
AoxI	GGCC	1 cut(s)	398
ApeKI	GCWGC	3 cut(s)	72, 109, 199
AspS9I	GGNCC	2 cut(s)	23, 398
AvaII	GGWCC	1 cut(s)	23
BbsI	GAAGAC	2 cut(s)	49, 322
BbvI	GCAGC	3 cut(s)	59, 96, 186
BfaI	CTAG	1 cut(s)	27
BisI	GCNGC	3 cut(s)	73, 110, 200
BlsI	GCNGC	3 cut(s)	74, 111, 201
Bme18I	GGWCC	1 cut(s)	23
BmgT120I	GGNCC	2 cut(s)	23, 398
BmiI	GGNNCC	1 cut(s)	420
BmsI	GCATC	2 cut(s)	84, 217
BpiI	GAAGAC	2 cut(s)	49, 322
BpuEI	CTTGAG	1 cut(s)	379
BsaJI	CCNNGG	1 cut(s)	401
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	401
BseGI	GGATG	2 cut(s)	208, 412
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseMII	CTCAG	2 cut(s)	56, 128
BseXI	GCAGC	3 cut(s)	59, 96, 186
BshFI	GGCC	1 cut(s)	400
BsiSI	CCGG	1 cut(s)	61
BslI	CCNNNNNNNGG	1 cut(s)	60
BsnI	GGCC	1 cut(s)	400
Bsp143I	GATC	1 cut(s)	367
BspANI	GGCC	1 cut(s)	400
BspCNI	CTCAG	2 cut(s)	57, 129
BspLI	GGNNCC	1 cut(s)	420
BspPI	GGATC	1 cut(s)	362
BssECI	CCNNGG	1 cut(s)	401
BssMI	GATC	1 cut(s)	367
Bst6I	CTCTTC	1 cut(s)	408
BstDEI	CTNAG	2 cut(s)	65, 137
BstDSI	CCRYGG	1 cut(s)	401
BstF5I	GGATG	2 cut(s)	208, 412
BstKTI	GATC	1 cut(s)	370
BstMBI	GATC	1 cut(s)	367
BstMWI	GCNNNNNNNGC	2 cut(s)	205, 360
BstV1I	GCAGC	3 cut(s)	59, 96, 186
BstV2I	GAAGAC	2 cut(s)	49, 322
BsuRI	GGCC	1 cut(s)	400
BtgI	CCRYGG	1 cut(s)	401
BtgZI	GCGATG	1 cut(s)	61
BtsCI	GGATG	2 cut(s)	208, 412
Cfr13I	GGNCC	2 cut(s)	23, 398
CviJI	RGCY	9 cut(s)	20, 41, 64, 109, 169, 199, 262, 400, 421
CviKI_1	RGCY	9 cut(s)	20, 41, 64, 109, 169, 199, 262, 400, 421
DdeI	CTNAG	2 cut(s)	65, 137
DpnI	GATC	1 cut(s)	369
DpnII	GATC	1 cut(s)	367
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
Eco47I	GGWCC	1 cut(s)	23
FaiI	YATR	3 cut(s)	36, 187, 424
FalI	AAGNNNNNCTT	2 cut(s)	30, 62
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	3 cut(s)	73, 110, 200
FokI	GGATG	2 cut(s)	195, 419
Fsp4HI	GCNGC	3 cut(s)	73, 110, 200
FspBI	CTAG	1 cut(s)	27
GluI	GCNGC	3 cut(s)	73, 110, 200
HaeIII	GGCC	1 cut(s)	400
HapII	CCGG	1 cut(s)	61
HpaII	CCGG	1 cut(s)	61
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	1 cut(s)	138
Hpy188III	TCNNGA	2 cut(s)	158, 212
Hpy8I	GTNNAC	1 cut(s)	226
HpyAV	CCTTC	1 cut(s)	164
HpyCH4IV	ACGT	2 cut(s)	268, 310
HpyCH4V	TGCA	4 cut(s)	75, 112, 202, 284
HpyF10VI	GCNNNNNNNGC	2 cut(s)	205, 360
HpyF3I	CTNAG	2 cut(s)	65, 137
HpySE526I	ACGT	2 cut(s)	268, 310
Kzo9I	GATC	1 cut(s)	367
LmnI	GCTCC	1 cut(s)	418
LpnPI	CCDG	4 cut(s)	6, 74, 119, 225
Lsp1109I	GCAGC	3 cut(s)	59, 96, 186
LweI	GCATC	2 cut(s)	84, 217
MaeI	CTAG	1 cut(s)	27
MaeII	ACGT	2 cut(s)	268, 310
MalI	GATC	1 cut(s)	369
MboI	GATC	1 cut(s)	367
MboII	GAAGA	3 cut(s)	49, 327, 425
MluCI	AATT	5 cut(s)	6, 141, 237, 279, 300
MnlI	CCTC	3 cut(s)	325, 330, 409
MseI	TTAA	2 cut(s)	275, 339
MslI	CAYNNNNRTG	1 cut(s)	289
MspA1I	CMGCKG	2 cut(s)	20, 109
MspI	CCGG	1 cut(s)	61
MwoI	GCNNNNNNNGC	2 cut(s)	205, 360
NdeII	GATC	1 cut(s)	367
NlaIV	GGNNCC	1 cut(s)	420
PkrI	GCNGC	3 cut(s)	74, 111, 201
PsiI	TTATAA	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	420
PspPI	GGNCC	2 cut(s)	23, 398
PvuII	CAGCTG	2 cut(s)	20, 109
RseI	CAYNNNNRTG	1 cut(s)	289
SaqAI	TTAA	2 cut(s)	275, 339
SatI	GCNGC	3 cut(s)	73, 110, 200
Sau3AI	GATC	1 cut(s)	367
Sau96I	GGNCC	2 cut(s)	23, 398
SfaNI	GCATC	2 cut(s)	84, 217
SinI	GGWCC	1 cut(s)	23
SmiMI	CAYNNNNRTG	1 cut(s)	289
SmlI	CTYRAG	1 cut(s)	358
SmoI	CTYRAG	1 cut(s)	358
Sse9I	AATT	5 cut(s)	6, 141, 237, 279, 300
SspMI	CTAG	1 cut(s)	27
TaiI	ACGT	2 cut(s)	271, 313
TasI	AATT	5 cut(s)	6, 141, 237, 279, 300
Tru1I	TTAA	2 cut(s)	275, 339
Tru9I	TTAA	2 cut(s)	275, 339
TseI	GCWGC	3 cut(s)	72, 109, 199
TspDTI	ATGAA	2 cut(s)	84, 321
TspGWI	ACGGA	2 cut(s)	43, 89
VpaK11BI	GGWCC	1 cut(s)	23
XmiI	GTMKAC	1 cut(s)	225
XspI	CTAG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.