Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0007308

Physical Location & Seq

Genomic Coordinates Forward (+)

7498366 .. 7499806

Gene Structure 1441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1069000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGATCTCTCCAAATGTTTCGGGATTCGTCTCATTTCGAAATCTTTTCCTCTTGACCAACAACTTTTGATATCGAGTGCTGCAGCTGATCTTATTATTGGTAACAATTCTTATGCCCAGCTGACCAGTAAAACAAGGCAATTATCAGTTGTTTCTGCTGCTCTTAATGACAATGAAAATCTTGTTCTATTGAATCAAGAGAAACATATTGTTTGGCAAAGATTTGATACTCCATCTGACATCCTTCTTCCTGGACAGAGCTTCTCTACATTGCAAACACTTCGAGCTGCAAGCAAGAATTGTGTGTCCAGTCACTACACTCTTCTTATGAGTGCTTCTTGTCAGTTGCAACTTCGATGGGAAAGCCATGTCACCTACTGGGCAAGTGGAAGCCTTTCTAGTTCAAACCTCATTGCTTTCATCACTTCTGATGGAGCCTTACAACTCCGTGACCAAAACTTGAAACCTGTGTGGTCACTGTCCGGTCAAGATCACAATGACTCCATAAATTACAGGTTTCTTAGGCTAGATGTTGATGTCTGGCAGGCTGTTGAGAACCAGTGTGATGTCTTTGCAACCTGTGGCCAATGTGGTATCTGTGTCTTCAATGATTCTGGGTCCCCTGATTGCGAATGTCTGTTTAAGCAGCAGACAAATGAGTCCACTTCCAGATGTTTTATTCCAAATAATCGCTGTTCTTCTGGTTCCAACATGCTTCATTATAAGCATACTTTCCTACATGGAATGTACCCACCAACTGATGATGTAGTTGCCAAAATGTGTGCTGATCCATTAGCTGTAAATCCCAATCGCTCATTGTCTTCCCCTCCTCCACTCAATCCGTCTCATAAGTTTTGTTTCCCTTGCCTAATTGGAGCAGCAGCAGGAATGTTTGTTGTATTTATTTTAGTTCAACTGGCACTTGGTTTCTGGTTCTACAGAAGAAGAATTTCGGTTAGGAAGAAAGCTGCTTTTGCTCTTACCAGCCCAAACTCAAACGGTTTGATAGTGTTATCCTTCTCTGAAATAAAGGAGCTTACAAAGAACTTCAAATATCAGATTGGGCCTAAGATGTTCAAGGGCGTTCTTCCAAATAGAAAACAAGTTGCTATCAAAGATGTGGATGCAAGCGTAGAAGAAAGAAAATACCGGGGTGTAGTTACAAAGATAGGTAACATTCATCACAAAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_1 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

398

Amino Acids

44.23

Weight (kDa)

8.94

Isoelectric Point (pI)

44.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	23 - 91	1.7e-08	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41890
fragaria_vesca	FvH4_6g26380 FvH4_6g26380
malus_domestica	MD12G1068200.v1.1 MD14G1068300.v1.1 MD14G1068400.v1.1 MD14G1068600.v1.1 MD14G1068700.v1.1 MD14G1069000.v1.1
prunus_persica	Prupe.7G065700_v2.0.a1 Prupe.7G065700_v2.0.a1 Prupe.7G065700_v2.0.a1 Prupe.7G065700_v2.0.a1
pyrus_communis	pycom12g06020 pycom14g05640
rosa_chinensis	RchiOBHm_Chr2g0126871
rosa_laevigata	RLG00000018924
rosa_multiflora	Rmu_sc0000007.1_g000026
rosa_roxburghii	Rroxscaffold_2G00116950
rosa_rugosa	Rorug02G0270000
rosa_samantha	Rh2AG322100 Rh2BG330300 Rh2CG310200 Rh2DG349600
rosa_wichuraiana	Rw2G026120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	723
AasI	GACNNNNNNGTC	1 cut(s)	658
AclWI	GGATC	2 cut(s)	12, 782
AcoI	YGGCCR	1 cut(s)	583
AcsI	RAATTY	1 cut(s)	948
AfaI	GTAC	1 cut(s)	749
AgsI	TTSAA	7 cut(s)	193, 405, 463, 607, 914, 1051, 1078
AjnI	CCWGG	1 cut(s)	250
AluBI	AGCT	7 cut(s)	86, 121, 261, 287, 797, 968, 1036
AluI	AGCT	7 cut(s)	86, 121, 261, 287, 797, 968, 1036
Alw26I	GTCTC	2 cut(s)	35, 849
AlwI	GGATC	2 cut(s)	12, 782
AoxI	GGCC	2 cut(s)	583, 1064
ApeKI	GCWGC	8 cut(s)	80, 83, 158, 287, 646, 878, 881, 968
ApoI	RAATTY	1 cut(s)	948
Asp700I	GAANNNNTTC	2 cut(s)	394, 949
AspS9I	GGNCC	2 cut(s)	618, 1064
AsuC2I	CCSGG	1 cut(s)	1151
AsuHPI	GGTGA	1 cut(s)	364
AsuII	TTCGAA	1 cut(s)	38
AvaII	GGWCC	1 cut(s)	618
BalI	TGGCCA	1 cut(s)	585
BbsI	GAAGAC	2 cut(s)	595, 813
BbvI	GCAGC	8 cut(s)	67, 95, 145, 274, 658, 890, 893, 955
BccI	CCATC	3 cut(s)	241, 351, 425
BcgI	CGANNNNNNTGC	2 cut(s)	263, 297
BciT130I	CCWGG	1 cut(s)	252
BcnI	CCSGG	1 cut(s)	1151
BcoDI	GTCTC	2 cut(s)	35, 849
BfaI	CTAG	2 cut(s)	399, 527
BfmI	CTRYAG	2 cut(s)	81, 937
BisI	GCNGC	8 cut(s)	81, 84, 159, 288, 647, 879, 882, 969
BlsI	GCNGC	8 cut(s)	82, 85, 160, 289, 648, 880, 883, 970
Bme1390I	CCNGG	2 cut(s)	252, 1151
Bme18I	GGWCC	1 cut(s)	618
BmgT120I	GGNCC	2 cut(s)	618, 1064
BmiI	GGNNCC	4 cut(s)	436, 619, 620, 706
BmrFI	CCNGG	2 cut(s)	252, 1151
BmrI	ACTGGG	1 cut(s)	388
BmsI	GCATC	1 cut(s)	1114
BmuI	ACTGGG	1 cut(s)	388
BpiI	GAAGAC	2 cut(s)	595, 813
Bpu14I	TTCGAA	1 cut(s)	38
BpuMI	CCSGG	1 cut(s)	1151
BsaJI	CCNNGG	1 cut(s)	1150
BsaWI	WCCGGW	1 cut(s)	482
BsaXI	ACNNNNNCTCC	2 cut(s)	485, 515
Bse1I	ACTGG	5 cut(s)	126, 309, 383, 559, 921
Bse3DI	GCAATG	2 cut(s)	269, 411
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	1 cut(s)	1150
BseGI	GGATG	2 cut(s)	240, 1129
BseMI	GCAATG	2 cut(s)	269, 411
BseNI	ACTGG	5 cut(s)	126, 309, 383, 559, 921
BseRI	GAGGAG	1 cut(s)	819
BseXI	GCAGC	8 cut(s)	67, 95, 145, 274, 658, 890, 893, 955
BseYI	CCCAGC	1 cut(s)	117
BshFI	GGCC	2 cut(s)	585, 1066
BsiSI	CCGG	2 cut(s)	483, 1150
BslFI	GGGAC	1 cut(s)	604
BsmAI	GTCTC	2 cut(s)	35, 849
BsmBI	CGTCTC	2 cut(s)	35, 849
BsmFI	GGGAC	1 cut(s)	604
BsnI	GGCC	2 cut(s)	585, 1066
Bsp119I	TTCGAA	1 cut(s)	38
Bsp143I	GATC	4 cut(s)	4, 88, 490, 787
BspANI	GGCC	2 cut(s)	585, 1066
BspLI	GGNNCC	4 cut(s)	436, 619, 620, 706
BspMAI	CTGCAG	1 cut(s)	85
BspPI	GGATC	2 cut(s)	12, 782
BspT104I	TTCGAA	1 cut(s)	38
BsrDI	GCAATG	2 cut(s)	269, 411
BsrI	ACTGG	5 cut(s)	126, 309, 383, 559, 921
BssECI	CCNNGG	1 cut(s)	1150
BssMI	GATC	4 cut(s)	4, 88, 490, 787
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	2 cut(s)	480, 1001
Bst6I	CTCTTC	1 cut(s)	327
BstBI	TTCGAA	1 cut(s)	38
BstC8I	GCNNGC	3 cut(s)	292, 546, 1129
BstDEI	CTNAG	2 cut(s)	521, 1068
BstF5I	GGATG	2 cut(s)	240, 1129
BstKTI	GATC	4 cut(s)	7, 91, 493, 790
BstMAI	GTCTC	2 cut(s)	35, 849
BstMBI	GATC	4 cut(s)	4, 88, 490, 787
BstMWI	GCNNNNNNNGC	1 cut(s)	974
BstNI	CCWGG	1 cut(s)	252
BstNSI	RCATGY	1 cut(s)	715
BstSCI	CCNGG	2 cut(s)	250, 1149
BstSFI	CTRYAG	2 cut(s)	81, 937
BstV1I	GCAGC	8 cut(s)	67, 95, 145, 274, 658, 890, 893, 955
BstV2I	GAAGAC	2 cut(s)	595, 813
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	2 cut(s)	585, 1066
BtsCI	GGATG	2 cut(s)	240, 1129
BtsIMutI	CAGTG	2 cut(s)	476, 566
Cac8I	GCNNGC	3 cut(s)	292, 546, 1129
Cfr13I	GGNCC	2 cut(s)	618, 1064
Csp6I	GTAC	1 cut(s)	748
CviAII	CATG	3 cut(s)	368, 712, 740
CviQI	GTAC	1 cut(s)	748
DdeI	CTNAG	2 cut(s)	521, 1068
DpnI	GATC	4 cut(s)	6, 90, 492, 789
DpnII	GATC	4 cut(s)	4, 88, 490, 787
DrdI	GACNNNNNNGTC	1 cut(s)	658
DseDI	GACNNNNNNGTC	1 cut(s)	658
EaeI	YGGCCR	1 cut(s)	583
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Eco32I	GATATC	1 cut(s)	72
Eco47I	GGWCC	1 cut(s)	618
EcoO109I	RGGNCCY	1 cut(s)	618
EcoRII	CCWGG	1 cut(s)	250
EcoRV	GATATC	1 cut(s)	72
Esp3I	CGTCTC	2 cut(s)	35, 849
FaeI	CATG	3 cut(s)	371, 715, 743
FaqI	GGGAC	1 cut(s)	604
FatI	CATG	3 cut(s)	367, 711, 739
Fnu4HI	GCNGC	8 cut(s)	81, 84, 159, 288, 647, 879, 882, 969
FokI	GGATG	2 cut(s)	227, 1136
Fsp4HI	GCNGC	8 cut(s)	81, 84, 159, 288, 647, 879, 882, 969
FspBI	CTAG	2 cut(s)	399, 527
GluI	GCNGC	8 cut(s)	81, 84, 159, 288, 647, 879, 882, 969
GsaI	CCCAGC	1 cut(s)	121
HaeIII	GGCC	2 cut(s)	585, 1066
HapII	CCGG	2 cut(s)	483, 1150
Hin1II	CATG	3 cut(s)	371, 715, 743
HinfI	GANTC	5 cut(s)	25, 193, 500, 611, 659
HpaII	CCGG	2 cut(s)	483, 1150
HphI	GGTGA	1 cut(s)	364
Hpy166II	GTNNAC	1 cut(s)	663
Hpy188I	TCNGA	4 cut(s)	238, 430, 1024, 1059
Hpy188III	TCNNGA	5 cut(s)	22, 53, 197, 488, 669
Hpy8I	GTNNAC	1 cut(s)	663
HpyAV	CCTTC	2 cut(s)	254, 1027
HpyCH4III	ACNGT	2 cut(s)	480, 1001
HpyCH4V	TGCA	6 cut(s)	83, 274, 290, 349, 575, 1127
HpyF10VI	GCNNNNNNNGC	1 cut(s)	974
HpyF3I	CTNAG	2 cut(s)	521, 1068
Hsp92II	CATG	3 cut(s)	371, 715, 743
KflI	GGGWCCC	1 cut(s)	618
Kzo9I	GATC	4 cut(s)	4, 88, 490, 787
LmnI	GCTCC	3 cut(s)	434, 875, 1033
Lsp1109I	GCAGC	8 cut(s)	67, 95, 145, 274, 658, 890, 893, 955
LweI	GCATC	1 cut(s)	1114
MaeI	CTAG	2 cut(s)	399, 527
MaeIII	GTNAC	7 cut(s)	101, 311, 370, 449, 474, 1159, 1172
MalI	GATC	4 cut(s)	6, 90, 492, 789
MboI	GATC	4 cut(s)	4, 88, 490, 787
MflI	RGATCY	1 cut(s)	4
MlsI	TGGCCA	1 cut(s)	585
MluCI	AATT	6 cut(s)	106, 140, 298, 508, 870, 948
MluNI	TGGCCA	1 cut(s)	585
MlyI	GAGTC	2 cut(s)	494, 668
MmeI	TCCRAC	1 cut(s)	732
MnlI	CCTC	4 cut(s)	60, 419, 837, 840
Mox20I	TGGCCA	1 cut(s)	585
MroXI	GAANNNNTTC	2 cut(s)	394, 949
MscI	TGGCCA	1 cut(s)	585
MseI	TTAA	3 cut(s)	165, 642, 1192
Msp20I	TGGCCA	1 cut(s)	585
MspA1I	CMGCKG	2 cut(s)	86, 121
MspI	CCGG	2 cut(s)	483, 1150
MspR9I	CCNGG	2 cut(s)	252, 1151
MvaI	CCWGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	1 cut(s)	974
NciI	CCSGG	1 cut(s)	1151
NdeII	GATC	4 cut(s)	4, 88, 490, 787
NlaIII	CATG	3 cut(s)	371, 715, 743
NlaIV	GGNNCC	4 cut(s)	436, 619, 620, 706
NmuCI	GTSAC	4 cut(s)	311, 370, 449, 474
NspI	RCATGY	1 cut(s)	715
NspV	TTCGAA	1 cut(s)	38
PdmI	GAANNNNTTC	2 cut(s)	394, 949
PfeI	GAWTC	3 cut(s)	25, 193, 611
PfoI	TCCNGGA	1 cut(s)	250
PkrI	GCNGC	8 cut(s)	82, 85, 160, 289, 648, 880, 883, 970
PleI	GAGTC	2 cut(s)	494, 667
PpsI	GAGTC	2 cut(s)	494, 667
PpuMI	RGGWCCY	1 cut(s)	618
PsiI	TTATAA	1 cut(s)	723
Psp5II	RGGWCCY	1 cut(s)	618
Psp6I	CCWGG	1 cut(s)	250
PspFI	CCCAGC	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	4 cut(s)	436, 619, 620, 706
PspPI	GGNCC	2 cut(s)	618, 1064
PspPPI	RGGWCCY	1 cut(s)	618
PstI	CTGCAG	1 cut(s)	85
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	2 cut(s)	86, 121
RsaI	GTAC	1 cut(s)	749
RsaNI	GTAC	1 cut(s)	748
SaqAI	TTAA	3 cut(s)	165, 642, 1192
SatI	GCNGC	8 cut(s)	81, 84, 159, 288, 647, 879, 882, 969
Sau3AI	GATC	4 cut(s)	4, 88, 490, 787
Sau96I	GGNCC	2 cut(s)	618, 1064
SchI	GAGTC	2 cut(s)	494, 668
ScrFI	CCNGG	2 cut(s)	252, 1151
SfaNI	GCATC	1 cut(s)	1114
SfcI	CTRYAG	2 cut(s)	81, 937
SfuI	TTCGAA	1 cut(s)	38
SinI	GGWCC	1 cut(s)	618
Sse9I	AATT	6 cut(s)	106, 140, 298, 508, 870, 948
SspMI	CTAG	2 cut(s)	399, 527
StyD4I	CCNGG	2 cut(s)	250, 1149
TaaI	ACNGT	2 cut(s)	480, 1001
TaqI	TCGA	4 cut(s)	38, 74, 283, 355
TasI	AATT	6 cut(s)	106, 140, 298, 508, 870, 948
TfiI	GAWTC	3 cut(s)	25, 193, 611
Tru1I	TTAA	3 cut(s)	165, 642, 1192
Tru9I	TTAA	3 cut(s)	165, 642, 1192
TscAI	CASTG	2 cut(s)	483, 566
TseFI	GTSAC	4 cut(s)	311, 370, 449, 474
TseI	GCWGC	8 cut(s)	80, 83, 158, 287, 646, 878, 881, 968
Tsp45I	GTSAC	4 cut(s)	311, 370, 449, 474
TspDTI	ATGAA	4 cut(s)	189, 409, 707, 1169
TspGWI	ACGGA	2 cut(s)	437, 831
TspRI	CASTG	2 cut(s)	483, 566
VpaK11BI	GGWCC	1 cut(s)	618
XapI	RAATTY	1 cut(s)	948
XceI	RCATGY	1 cut(s)	715
XmnI	GAANNNNTTC	2 cut(s)	394, 949
XspI	CTAG	2 cut(s)	399, 527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.