Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0007308

Physical Location & Seq

Genomic Coordinates Forward (+)

7433279 .. 7434216

Gene Structure 938 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1068400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGTTCATTGCATTTATTTTAGTTCAACTGGCACTTGGTTTCTGGTTCTACAGAAGAAGAATTTCGGTTAGGAAGAAAGCTGCTTTTGCTCATACCAGCCCAAACTCAAACGGCTTGATAGTGTTATCCTTATCTGAAATAGAGGATCTTACAGAGAACTTCAAATATCAGATTGGGCCAAAGATGTTCAAAGGCGTTCTTCCAAATAGAAAACCAGTTGCTATCAAAGATGTGGATGCAAGTGTAGAAGACAGAAAATACCGGGGTATAGTTACAAAGATAGGTAACATTCATCACAAAAGCCTTGTAAAGCTGCAGGGCTACTGTTGTGAGGTAGATCACAAATTTCTGGTCTATGAATATGTCAAGAATGGTTCTCTGGAGAAGTATATAGAAGATCTTAAATTGTGTAAGAAGCTGACTTGGGGGAAGAGATTTGATACATGCTTAAGTGTCGGAAGGGCCGTCTGTTATCTACACACAAGCTGTATGGAATTTATGAGCCATGGGAATTTCAAATGCGAGAATGTTGTACTTGATCAAAATTTAGAGGCCAAGGTGACTGAATTTGGACTTAGGAACATAGTCAGCAAGTGGCTGCAAGGGCATCAAGAGAATGTGATAGACAGGAAAATAATTGGCGGGTTTATTCCACAAGAGCTGGAACGTGCTTTGAGAATTGCATTTTGGTGTGTCCAAATTGATGAACGTAGAAGACCTCCAATGAGAGAGGTGGTTAAGGTGTTGGAGGGCACCTTGAGCGTTGATCCACCACCACCCCTTTTTTCTTGTCAATGGCCACGAGATGACAAAGAAGAGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_1 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

275

Amino Acids

31.72

Weight (kDa)

9.05

Isoelectric Point (pI)

38.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	68 - 197	1.9e-12	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	69 - 196	9.7e-16	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41890
fragaria_vesca	FvH4_6g26380 FvH4_6g26380
malus_domestica	MD12G1068200.v1.1 MD14G1068300.v1.1 MD14G1068400.v1.1 MD14G1068600.v1.1 MD14G1068700.v1.1 MD14G1069000.v1.1
prunus_persica	Prupe.7G065700_v2.0.a1 Prupe.7G065700_v2.0.a1 Prupe.7G065700_v2.0.a1 Prupe.7G065700_v2.0.a1
pyrus_communis	pycom12g06020 pycom14g05640
rosa_chinensis	RchiOBHm_Chr2g0126871
rosa_laevigata	RLG00000018924
rosa_multiflora	Rmu_sc0000007.1_g000026
rosa_roxburghii	Rroxscaffold_2G00116950
rosa_rugosa	Rorug02G0270000
rosa_samantha	Rh2AG322100 Rh2BG330300 Rh2CG310200 Rh2DG349600
rosa_wichuraiana	Rw2G026120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	752
AciI	CCGC	1 cut(s)	642
AclWI	GGATC	2 cut(s)	153, 761
AcoI	YGGCCR	1 cut(s)	797
AcsI	RAATTY	6 cut(s)	60, 344, 494, 511, 544, 566
AfaI	GTAC	1 cut(s)	534
AflII	CTTAAG	1 cut(s)	448
AgsI	TTSAA	4 cut(s)	26, 163, 190, 517
AjuI	GAANNNNNNNTTGG	2 cut(s)	670, 702
AluBI	AGCT	5 cut(s)	80, 313, 418, 486, 661
AluI	AGCT	5 cut(s)	80, 313, 418, 486, 661
AlwI	GGATC	2 cut(s)	153, 761
AoxI	GGCC	4 cut(s)	176, 462, 552, 797
ApeKI	GCWGC	3 cut(s)	80, 313, 598
ApoI	RAATTY	6 cut(s)	60, 344, 494, 511, 544, 566
ArsI	GACNNNNNNTTYG	2 cut(s)	336, 368
Asp700I	GAANNNNTTC	1 cut(s)	61
AspS9I	GGNCC	2 cut(s)	176, 462
AsuC2I	CCSGG	1 cut(s)	263
AsuHPI	GGTGA	1 cut(s)	571
BaeGI	GKGCMC	1 cut(s)	755
BalI	TGGCCA	1 cut(s)	799
BanI	GGYRCC	1 cut(s)	752
BauI	CACGAG	1 cut(s)	801
BbsI	GAAGAC	2 cut(s)	255, 721
BbvI	GCAGC	3 cut(s)	67, 300, 585
BceAI	ACGGC	2 cut(s)	127, 449
BclI	TGATCA	1 cut(s)	538
BcnI	CCSGG	1 cut(s)	263
BfmI	CTRYAG	2 cut(s)	49, 314
BfrI	CTTAAG	1 cut(s)	448
BglII	AGATCT	1 cut(s)	397
BisI	GCNGC	3 cut(s)	81, 314, 599
BlsI	GCNGC	3 cut(s)	82, 315, 600
Bme1390I	CCNGG	1 cut(s)	263
BmgT120I	GGNCC	2 cut(s)	176, 462
BmiI	GGNNCC	1 cut(s)	754
BmrFI	CCNGG	1 cut(s)	263
BmsI	GCATC	2 cut(s)	226, 616
BpiI	GAAGAC	2 cut(s)	255, 721
BpmI	CTGGAG	1 cut(s)	401
BpuEI	CTTGAG	1 cut(s)	778
BpuMI	CCSGG	1 cut(s)	263
BsaJI	CCNNGG	3 cut(s)	262, 505, 555
Bse1I	ACTGG	2 cut(s)	33, 215
Bse3DI	GCAATG	1 cut(s)	6
BseDI	CCNNGG	3 cut(s)	262, 505, 555
BseGI	GGATG	1 cut(s)	241
BseMI	GCAATG	1 cut(s)	6
BseNI	ACTGG	2 cut(s)	33, 215
BseSI	GKGCMC	1 cut(s)	755
BseXI	GCAGC	3 cut(s)	67, 300, 585
BshFI	GGCC	4 cut(s)	178, 464, 554, 799
BshNI	GGYRCC	1 cut(s)	752
BsiSI	CCGG	1 cut(s)	262
BsnI	GGCC	4 cut(s)	178, 464, 554, 799
Bsp1286I	GDGCHC	1 cut(s)	755
Bsp143I	GATC	5 cut(s)	145, 337, 397, 538, 766
Bsp19I	CCATGG	1 cut(s)	505
BspACI	CCGC	1 cut(s)	642
BspANI	GGCC	4 cut(s)	178, 464, 554, 799
BspLI	GGNNCC	1 cut(s)	754
BspMAI	CTGCAG	1 cut(s)	318
BspPI	GGATC	2 cut(s)	153, 761
BspQI	GCTCTTC	1 cut(s)	810
BspT107I	GGYRCC	1 cut(s)	752
BspTI	CTTAAG	1 cut(s)	448
BsrDI	GCAATG	1 cut(s)	6
BsrI	ACTGG	2 cut(s)	33, 215
BssECI	CCNNGG	3 cut(s)	262, 505, 555
BssMI	GATC	5 cut(s)	145, 337, 397, 538, 766
BssSI	CACGAG	1 cut(s)	801
BssT1I	CCWWGG	2 cut(s)	505, 555
Bst2BI	CACGAG	1 cut(s)	801
Bst4CI	ACNGT	1 cut(s)	326
Bst6I	CTCTTC	2 cut(s)	425, 810
BstAFI	CTTAAG	1 cut(s)	448
BstDEI	CTNAG	1 cut(s)	575
BstDSI	CCRYGG	1 cut(s)	505
BstF5I	GGATG	1 cut(s)	241
BstKTI	GATC	5 cut(s)	148, 340, 400, 541, 769
BstMBI	GATC	5 cut(s)	145, 337, 397, 538, 766
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 604, 759
BstNSI	RCATGY	1 cut(s)	447
BstSCI	CCNGG	1 cut(s)	261
BstSFI	CTRYAG	2 cut(s)	49, 314
BstSLI	GKGCMC	1 cut(s)	755
BstV1I	GCAGC	3 cut(s)	67, 300, 585
BstV2I	GAAGAC	2 cut(s)	255, 721
BstX2I	RGATCY	2 cut(s)	145, 397
BstYI	RGATCY	2 cut(s)	145, 397
BsuRI	GGCC	4 cut(s)	178, 464, 554, 799
BtgI	CCRYGG	1 cut(s)	505
BtsCI	GGATG	1 cut(s)	241
Cfr13I	GGNCC	2 cut(s)	176, 462
Csp6I	GTAC	1 cut(s)	533
CviAII	CATG	2 cut(s)	444, 506
CviQI	GTAC	1 cut(s)	533
DdeI	CTNAG	1 cut(s)	575
DpnI	GATC	5 cut(s)	147, 339, 399, 540, 768
DpnII	GATC	5 cut(s)	145, 337, 397, 538, 766
EaeI	YGGCCR	1 cut(s)	797
Eam1104I	CTCTTC	2 cut(s)	425, 810
EarI	CTCTTC	2 cut(s)	425, 810
Eco130I	CCWWGG	2 cut(s)	505, 555
EcoT14I	CCWWGG	2 cut(s)	505, 555
ErhI	CCWWGG	2 cut(s)	505, 555
FaeI	CATG	2 cut(s)	447, 509
FalI	AAGNNNNNCTT	2 cut(s)	183, 215
FatI	CATG	2 cut(s)	443, 505
FauI	CCCGC	1 cut(s)	635
FbaI	TGATCA	1 cut(s)	538
Fnu4HI	GCNGC	3 cut(s)	81, 314, 599
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	3 cut(s)	81, 314, 599
GluI	GCNGC	3 cut(s)	81, 314, 599
GsuI	CTGGAG	1 cut(s)	401
HaeIII	GGCC	4 cut(s)	178, 464, 554, 799
HapII	CCGG	1 cut(s)	262
Hin1II	CATG	2 cut(s)	447, 509
HpaII	CCGG	1 cut(s)	262
HphI	GGTGA	1 cut(s)	571
Hpy188I	TCNGA	3 cut(s)	136, 171, 458
Hpy188III	TCNNGA	3 cut(s)	367, 380, 611
HpyAV	CCTTC	1 cut(s)	453
HpyCH4III	ACNGT	1 cut(s)	326
HpyCH4IV	ACGT	2 cut(s)	667, 709
HpyCH4V	TGCA	5 cut(s)	11, 239, 316, 601, 683
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 604, 759
HpyF3I	CTNAG	1 cut(s)	575
HpySE526I	ACGT	2 cut(s)	667, 709
Hsp92II	CATG	2 cut(s)	447, 509
Ksp22I	TGATCA	1 cut(s)	538
Kzo9I	GATC	5 cut(s)	145, 337, 397, 538, 766
LguI	GCTCTTC	1 cut(s)	810
Lsp1109I	GCAGC	3 cut(s)	67, 300, 585
LweI	GCATC	2 cut(s)	226, 616
MaeII	ACGT	2 cut(s)	667, 709
MaeIII	GTNAC	3 cut(s)	271, 284, 559
MalI	GATC	5 cut(s)	147, 339, 399, 540, 768
MboI	GATC	5 cut(s)	145, 337, 397, 538, 766
MboII	GAAGA	8 cut(s)	66, 69, 85, 191, 260, 407, 442, 726
MflI	RGATCY	2 cut(s)	145, 397
MhlI	GDGCHC	1 cut(s)	755
MlsI	TGGCCA	1 cut(s)	799
MluNI	TGGCCA	1 cut(s)	799
MmeI	TCCRAC	2 cut(s)	436, 726
MnlI	CCTC	6 cut(s)	136, 325, 544, 724, 729, 742
Mox20I	TGGCCA	1 cut(s)	799
MroXI	GAANNNNTTC	1 cut(s)	61
MscI	TGGCCA	1 cut(s)	799
MseI	TTAA	3 cut(s)	402, 449, 738
MslI	CAYNNNNRTG	1 cut(s)	688
Msp20I	TGGCCA	1 cut(s)	799
MspCI	CTTAAG	1 cut(s)	448
MspI	CCGG	1 cut(s)	262
MspR9I	CCNGG	1 cut(s)	263
MwoI	GCNNNNNNNGC	3 cut(s)	86, 604, 759
NciI	CCSGG	1 cut(s)	263
NcoI	CCATGG	1 cut(s)	505
NdeII	GATC	5 cut(s)	145, 337, 397, 538, 766
NlaIII	CATG	2 cut(s)	447, 509
NlaIV	GGNNCC	1 cut(s)	754
NmuCI	GTSAC	1 cut(s)	559
NspI	RCATGY	1 cut(s)	447
PciSI	GCTCTTC	1 cut(s)	810
PcsI	WCGNNNNNNNCGW	1 cut(s)	462
PdmI	GAANNNNTTC	1 cut(s)	61
PkrI	GCNGC	3 cut(s)	82, 315, 600
PspN4I	GGNNCC	1 cut(s)	754
PspPI	GGNCC	2 cut(s)	176, 462
PstI	CTGCAG	1 cut(s)	318
PsuI	RGATCY	2 cut(s)	145, 397
RsaI	GTAC	1 cut(s)	534
RsaNI	GTAC	1 cut(s)	533
RseI	CAYNNNNRTG	1 cut(s)	688
SapI	GCTCTTC	1 cut(s)	810
SaqAI	TTAA	3 cut(s)	402, 449, 738
SatI	GCNGC	3 cut(s)	81, 314, 599
Sau3AI	GATC	5 cut(s)	145, 337, 397, 538, 766
Sau96I	GGNCC	2 cut(s)	176, 462
ScrFI	CCNGG	1 cut(s)	263
SduI	GDGCHC	1 cut(s)	755
SfaNI	GCATC	2 cut(s)	226, 616
SfcI	CTRYAG	2 cut(s)	49, 314
SmiMI	CAYNNNNRTG	1 cut(s)	688
SmlI	CTYRAG	2 cut(s)	448, 757
SmoI	CTYRAG	2 cut(s)	448, 757
SsiI	CCGC	1 cut(s)	642
StyD4I	CCNGG	1 cut(s)	261
StyI	CCWWGG	2 cut(s)	505, 555
TaaI	ACNGT	1 cut(s)	326
TaiI	ACGT	2 cut(s)	670, 712
TatI	WGTACW	1 cut(s)	532
Tru1I	TTAA	3 cut(s)	402, 449, 738
Tru9I	TTAA	3 cut(s)	402, 449, 738
TseFI	GTSAC	1 cut(s)	559
TseI	GCWGC	3 cut(s)	80, 313, 598
Tsp45I	GTSAC	1 cut(s)	559
TspDTI	ATGAA	3 cut(s)	281, 372, 720
Vha464I	CTTAAG	1 cut(s)	448
XapI	RAATTY	6 cut(s)	60, 344, 494, 511, 544, 566
XceI	RCATGY	1 cut(s)	447
XmnI	GAANNNNTTC	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.