MD14G1097900.v1.1

caffeic acid

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0011057
Physical Location & Seq
Forward (+)
14907128 .. 14907803
676 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1097900.v1.1.491

Sequence Viewer

Length: 435 bp
ATGCTCACCAACTACGGTGTGTTCACGGAACATCTGAACGACACCATTGACGGCTCCGACGACAGAAAGTTCTCCCTCACCGCAATTGGTAAAACCCTCGTCACCGACAAAAACGGCTCATCGTACAACCTTTATGTCCTTCAACACCACCAGGATGTGCTCATGAGTGCATGGCCAATGGTGCACGAGGTTGTGGTGGACGCCACGATGGAGCCATTCGTGAAGGTGAACGGTGAGCTGGCTTACGAGTACTATGGGAAGAAGCCGGAAATGAACGGCCTGATGCAAAAGGCGATGTCCAGTGTATCGGTGTCGTTCATGAACGTAATATTGGACGGCTATGATGGATTTGAAGGGGTGGAGAGATTGATGGATGTGGGAGGGAGCGCAGGCGATTGCTTGCAGATGATCCTATGGAAGCACACCCTAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

145

Amino Acids

16.09

Weight (kDa)

4.78

Isoelectric Point (pI)

22.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_2 PF00891 61 - 138 3.4e-08 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011057)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53140
fragaria_vesca FvH4_6g17130 FvH4_6g17130 FvH4_6g17130
malus_domestica MD12G1103500.v1.1 MD14G1097900.v1.1
prunus_persica Prupe.7G123600_v2.0.a1
pyrus_communis pycom12g10200
rosa_chinensis RchiOBHm_Chr3g0471211
rosa_laevigata RLG00000024197
rosa_multiflora Rmu_co8165034.1_g000001 Rmu_sc0010073.1_g000018 Rmu_sc0031310.1_g000002
rosa_roxburghii Rroxscaffold_6G00410220
rosa_rugosa Rorug03G0116200
rosa_samantha Rh3AG165100 Rh3BG190700 Rh3CG181000 Rh3DG185100
rosa_wichuraiana Rw3G015570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 81
AclWI GGATC 1 cut(s) 403
AcoI YGGCCR 1 cut(s) 173
AcyI GRCGYC 1 cut(s) 201
AfaI GTAC 2 cut(s) 125, 251
AgsI TTSAA 2 cut(s) 143, 353
AjnI CCWGG 1 cut(s) 150
AjuI GAANNNNNNNTTGG 2 cut(s) 314, 346
AluBI AGCT 1 cut(s) 238
AluI AGCT 1 cut(s) 238
Alw21I GWGCWC 2 cut(s) 162, 186
Alw44I GTGCAC 1 cut(s) 182
AlwI GGATC 1 cut(s) 403
AoxI GGCC 2 cut(s) 173, 277
ApaLI GTGCAC 1 cut(s) 182
AspLEI GCGC 1 cut(s) 389
AsuHPI GGTGA 4 cut(s) 70, 94, 238, 245
BaeGI GKGCMC 1 cut(s) 186
BalI TGGCCA 1 cut(s) 175
BauI CACGAG 1 cut(s) 185
Bbv12I GWGCWC 2 cut(s) 162, 186
BccI CCATC 3 cut(s) 202, 338, 364
BceAI ACGGC 4 cut(s) 67, 130, 292, 352
BciT130I CCWGG 1 cut(s) 152
BmcAI AGTACT 1 cut(s) 251
Bme1390I CCNGG 1 cut(s) 152
BmiI GGNNCC 2 cut(s) 55, 213
BmrFI CCNGG 1 cut(s) 152
BmsI GCATC 1 cut(s) 273
BsaHI GRCGYC 1 cut(s) 201
Bse1I ACTGG 1 cut(s) 300
BseBI CCWGG 1 cut(s) 152
BseGI GGATG 2 cut(s) 160, 379
BseNI ACTGG 1 cut(s) 300
BseSI GKGCMC 1 cut(s) 186
BshFI GGCC 2 cut(s) 175, 279
BsiHKAI GWGCWC 2 cut(s) 162, 186
BsiSI CCGG 1 cut(s) 266
BsnI GGCC 2 cut(s) 175, 279
Bsp1286I GDGCHC 2 cut(s) 162, 186
Bsp143I GATC 1 cut(s) 408
BspACI CCGC 1 cut(s) 81
BspANI GGCC 2 cut(s) 175, 279
BspHI TCATGA 2 cut(s) 162, 318
BspLI GGNNCC 2 cut(s) 55, 213
BspPI GGATC 1 cut(s) 403
BsrI ACTGG 1 cut(s) 300
BssMI GATC 1 cut(s) 408
BssNI GRCGYC 1 cut(s) 201
BssSI CACGAG 1 cut(s) 185
Bst2BI CACGAG 1 cut(s) 185
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 2 cut(s) 17, 233
BstACI GRCGYC 1 cut(s) 201
BstC8I GCNNGC 3 cut(s) 240, 391, 401
BstF5I GGATG 2 cut(s) 160, 379
BstHHI GCGC 1 cut(s) 389
BstKTI GATC 1 cut(s) 411
BstMBI GATC 1 cut(s) 408
BstMWI GCNNNNNNNGC 1 cut(s) 181
BstNI CCWGG 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 150
BstSLI GKGCMC 1 cut(s) 186
BsuRI GGCC 2 cut(s) 175, 279
BtgZI GCGATG 1 cut(s) 308
BtsCI GGATG 2 cut(s) 160, 379
BtsIMutI CAGTG 1 cut(s) 307
Cac8I GCNNGC 3 cut(s) 240, 391, 401
CciI TCATGA 2 cut(s) 162, 318
CfoI GCGC 1 cut(s) 389
CseI GACGC 1 cut(s) 209
Csp6I GTAC 2 cut(s) 124, 250
CviAII CATG 3 cut(s) 163, 171, 319
CviJI RGCY 9 cut(s) 54, 117, 175, 214, 238, 242, 265, 279, 339
CviKI_1 RGCY 9 cut(s) 54, 117, 175, 214, 238, 242, 265, 279, 339
CviQI GTAC 2 cut(s) 124, 250
DpnI GATC 1 cut(s) 410
DpnII GATC 1 cut(s) 408
EaeI YGGCCR 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 150
FaeI CATG 3 cut(s) 166, 174, 322
FaiI YATR 8 cut(s) 135, 164, 172, 255, 320, 342, 415, 433
FatI CATG 3 cut(s) 162, 170, 318
FokI GGATG 2 cut(s) 167, 386
GlaI GCGC 1 cut(s) 388
HaeIII GGCC 2 cut(s) 175, 279
HapII CCGG 1 cut(s) 266
HgaI GACGC 1 cut(s) 209
HhaI GCGC 1 cut(s) 389
Hin1I GRCGYC 1 cut(s) 201
Hin1II CATG 3 cut(s) 166, 174, 322
Hin6I GCGC 1 cut(s) 387
HinP1I GCGC 1 cut(s) 387
HpaII CCGG 1 cut(s) 266
HphI GGTGA 4 cut(s) 70, 94, 238, 245
Hpy166II GTNNAC 4 cut(s) 24, 184, 199, 229
Hpy188I TCNGA 2 cut(s) 36, 58
Hpy188III TCNNGA 3 cut(s) 163, 220, 319
Hpy8I GTNNAC 4 cut(s) 24, 184, 199, 229
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 3 cut(s) 149, 217, 347
HpyCH4III ACNGT 2 cut(s) 17, 233
HpyCH4IV ACGT 1 cut(s) 324
HpyCH4V TGCA 4 cut(s) 170, 184, 286, 403
HpyF10VI GCNNNNNNNGC 1 cut(s) 181
HpySE526I ACGT 1 cut(s) 324
Hsp92I GRCGYC 1 cut(s) 201
Hsp92II CATG 3 cut(s) 166, 174, 322
HspAI GCGC 1 cut(s) 387
Kzo9I GATC 1 cut(s) 408
LmnI GCTCC 3 cut(s) 59, 211, 384
LpnPI CCDG 7 cut(s) 137, 164, 224, 279, 293, 313, 375
LweI GCATC 1 cut(s) 273
MaeII ACGT 1 cut(s) 324
MaeIII GTNAC 1 cut(s) 100
MalI GATC 1 cut(s) 410
MboI GATC 1 cut(s) 408
MboII GAAGA 1 cut(s) 271
MfeI CAATTG 1 cut(s) 84
MhlI GDGCHC 2 cut(s) 162, 186
MlsI TGGCCA 1 cut(s) 175
MluCI AATT 1 cut(s) 84
MluNI TGGCCA 1 cut(s) 175
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 4 cut(s) 86, 107, 181, 374
Mox20I TGGCCA 1 cut(s) 175
MscI TGGCCA 1 cut(s) 175
MslI CAYNNNNRTG 1 cut(s) 153
Msp20I TGGCCA 1 cut(s) 175
MspI CCGG 1 cut(s) 266
MspR9I CCNGG 1 cut(s) 152
MunI CAATTG 1 cut(s) 84
MvaI CCWGG 1 cut(s) 152
MwoI GCNNNNNNNGC 1 cut(s) 181
NdeII GATC 1 cut(s) 408
NlaIII CATG 3 cut(s) 166, 174, 322
NlaIV GGNNCC 2 cut(s) 55, 213
NmuCI GTSAC 1 cut(s) 100
PagI TCATGA 2 cut(s) 162, 318
PcsI WCGNNNNNNNCGW 1 cut(s) 57
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 2 cut(s) 55, 213
RsaI GTAC 2 cut(s) 125, 251
RsaNI GTAC 2 cut(s) 124, 250
RseI CAYNNNNRTG 1 cut(s) 153
Sau3AI GATC 1 cut(s) 408
ScaI AGTACT 1 cut(s) 251
ScrFI CCNGG 1 cut(s) 152
SduI GDGCHC 2 cut(s) 162, 186
SetI ASST 5 cut(s) 132, 192, 228, 240, 327
SfaNI GCATC 1 cut(s) 273
SmiMI CAYNNNNRTG 1 cut(s) 153
Sse9I AATT 1 cut(s) 84
SsiI CCGC 1 cut(s) 81
SspI AATATT 1 cut(s) 330
StyD4I CCNGG 1 cut(s) 150
TaaI ACNGT 2 cut(s) 17, 233
TaiI ACGT 1 cut(s) 327
TasI AATT 1 cut(s) 84
TatI WGTACW 1 cut(s) 249
TscAI CASTG 1 cut(s) 307
TseFI GTSAC 1 cut(s) 100
Tsp45I GTSAC 1 cut(s) 100
TspDTI ATGAA 3 cut(s) 287, 307, 335
TspGWI ACGGA 1 cut(s) 41
TspRI CASTG 1 cut(s) 307
VneI GTGCAC 1 cut(s) 182
ZrmI AGTACT 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.