Rh3BG190700

caffeic acid

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0011057
Physical Location & Seq
Reverse (-)
16876182 .. 16880334
4153 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG190700.1

Sequence Viewer

Length: 918 bp
ATGGAAGACGTAAACCGAACCAAAGAGGCAAGCAACGAAGCAAGGATTGCCATACTGGAGCTGGCCAACATGATCAGCGTCCCTATGTCCCTAAACGCCGTCGTCCGCCTCAACGTCGCCGATGCCATCTGGCAATCCGGCTCTAACACCCCCCTCTCCGCCTCTCAGATCCTCGAACGTGTCCTTCCTGCCGGCGGTGGTGACGCCGAGAACCTCCAGCGCATCCTCCGCATGCTCACCAGCTACGGTGTGTTCTCCGAGCACTTCAACGCCGACGGCTCCGAGAGAAAGTTCTCCCTCACCGAGGTCGGCCAAACCCTAGTCACCAATCAAGATGGTCTCTCCTATAGGGCCTATGTCCTCCAGCACCACCAGGATGCACTAATGGGGGCGTGGCCACTGGTGCATGAGGCGGTGGTGGATCCCACTGTGGAACCGTTCGTGAAGGCGAACGGCGAGCCGGCGTACCAGTACTACGGGAAGAGGCCGGAGATGAATGGGTTGATGCAAAAGGCAATGTCGGGAGTATCTGTGCCGTTCATCAAGGCAGTACTAGACGGTTACGATGGTTTTCAAGGGGTGACGAGACTGGTGGATGTGGGTGGCAGTGCGGGAGATTGCCTGAGAATGATCATAGACAAATATCCCAATGTACGGGAAGGCATTAACTTTGACCTGCCTGAGGTCGTTTCGAAGGCCCCAGCTATCGCCGGAGTGACTCATGTTGGTGGTGACATGTTCAAGTCAATTCCTAGTGGTGACGTTATCTTCATGAAGGTCAGTTTACATTTTTTATGTTGGGTTTGGTTTGAAATTATTTTTTTCATTTATATCTATATCTATATTATATTTAGTCAAAGTGAATGTGAAAAGACAGTAAAACTCTTAGATCTTATTTTAATTTTAAATAATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

305

Amino Acids

33.78

Weight (kDa)

5.09

Isoelectric Point (pI)

33.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 19 - 109 3.3e-16 O-methyltransferase dimerisation domain
Methyltransf_2 PF00891 136 - 263 1.2e-24 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011057)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53140
fragaria_vesca FvH4_6g17130 FvH4_6g17130 FvH4_6g17130
malus_domestica MD12G1103500.v1.1 MD14G1097900.v1.1
prunus_persica Prupe.7G123600_v2.0.a1
pyrus_communis pycom12g10200
rosa_chinensis RchiOBHm_Chr3g0471211
rosa_laevigata RLG00000024197
rosa_multiflora Rmu_co8165034.1_g000001 Rmu_sc0010073.1_g000018 Rmu_sc0031310.1_g000002
rosa_roxburghii Rroxscaffold_6G00410220
rosa_rugosa Rorug03G0116200
rosa_samantha Rh3AG165100 Rh3BG190700 Rh3CG181000 Rh3DG185100
rosa_wichuraiana Rw3G015570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 684
AciI CCGC 6 cut(s) 106, 159, 195, 229, 413, 611
AclWI GGATC 3 cut(s) 163, 416, 429
AcoI YGGCCR 3 cut(s) 63, 310, 395
AcyI GRCGYC 1 cut(s) 204
AfaI GTAC 4 cut(s) 467, 473, 552, 654
AfiI CCNNNNNNNGG 4 cut(s) 194, 304, 654, 682
AflIII ACRYGT 2 cut(s) 178, 735
AgsI TTSAA 4 cut(s) 268, 575, 742, 812
AjnI CCWGG 1 cut(s) 372
AluBI AGCT 3 cut(s) 61, 243, 704
AluI AGCT 3 cut(s) 61, 243, 704
Alw21I GWGCWC 1 cut(s) 264
Alw26I GTCTC 2 cut(s) 344, 580
AlwI GGATC 3 cut(s) 163, 416, 429
AoxI GGCC 6 cut(s) 63, 310, 351, 395, 485, 696
AspLEI GCGC 1 cut(s) 222
AspS9I GGNCC 2 cut(s) 351, 697
AsuHPI GGTGA 7 cut(s) 212, 229, 292, 316, 592, 743, 770
AsuII TTCGAA 1 cut(s) 692
AxyI CCTNAGG 1 cut(s) 681
BalI TGGCCA 2 cut(s) 65, 397
BamHI GGATCC 1 cut(s) 421
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 264
BccI CCATC 3 cut(s) 134, 329, 560
BceAI ACGGC 4 cut(s) 83, 292, 469, 520
BciT130I CCWGG 1 cut(s) 374
BclI TGATCA 2 cut(s) 72, 630
BcoDI GTCTC 2 cut(s) 344, 580
BfaI CTAG 3 cut(s) 320, 554, 753
BfmI CTRYAG 1 cut(s) 346
BfuAI ACCTGC 1 cut(s) 684
BglII AGATCT 1 cut(s) 889
BmcAI AGTACT 2 cut(s) 473, 552
Bme1390I CCNGG 1 cut(s) 374
BmgT120I GGNCC 2 cut(s) 351, 697
BmiI GGNNCC 4 cut(s) 280, 423, 435, 699
BmrFI CCNGG 1 cut(s) 374
BmsI GCATC 4 cut(s) 112, 231, 367, 495
BpiI GAAGAC 1 cut(s) 12
BpmI CTGGAG 3 cut(s) 77, 200, 347
Bpu14I TTCGAA 1 cut(s) 692
BsaHI GRCGYC 1 cut(s) 204
BsaI GGTCTC 1 cut(s) 344
BsaJI CCNNGG 1 cut(s) 303
BsaXI ACNNNNNCTCC 2 cut(s) 516, 546
Bsc4I CCNNNNNNNGG 4 cut(s) 194, 304, 654, 682
Bse118I RCCGGY 2 cut(s) 191, 460
Bse1I ACTGG 4 cut(s) 60, 405, 469, 594
Bse21I CCTNAGG 1 cut(s) 681
Bse3DI GCAATG 1 cut(s) 522
BseBI CCWGG 1 cut(s) 374
BseDI CCNNGG 1 cut(s) 303
BseGI GGATG 3 cut(s) 222, 382, 601
BseLI CCNNNNNNNGG 4 cut(s) 194, 304, 654, 682
BseMI GCAATG 1 cut(s) 522
BseMII CTCAG 3 cut(s) 179, 614, 672
BseNI ACTGG 4 cut(s) 60, 405, 469, 594
BseYI CCCAGC 1 cut(s) 700
BshFI GGCC 6 cut(s) 65, 312, 353, 397, 487, 698
BsiHKAI GWGCWC 1 cut(s) 264
BsiSI CCGG 5 cut(s) 138, 192, 461, 488, 711
BslFI GGGAC 2 cut(s) 65, 73
BslI CCNNNNNNNGG 4 cut(s) 194, 304, 654, 682
BsmAI GTCTC 2 cut(s) 344, 580
BsmFI GGGAC 2 cut(s) 65, 73
BsnI GGCC 6 cut(s) 65, 312, 353, 397, 487, 698
Bso31I GGTCTC 1 cut(s) 344
Bsp119I TTCGAA 1 cut(s) 692
Bsp1286I GDGCHC 1 cut(s) 264
Bsp143I GATC 5 cut(s) 72, 168, 421, 630, 889
BspACI CCGC 6 cut(s) 106, 159, 195, 229, 413, 611
BspANI GGCC 6 cut(s) 65, 312, 353, 397, 487, 698
BspCNI CTCAG 3 cut(s) 178, 615, 673
BspHI TCATGA 1 cut(s) 771
BspLI GGNNCC 4 cut(s) 280, 423, 435, 699
BspMI ACCTGC 1 cut(s) 684
BspPI GGATC 3 cut(s) 163, 416, 429
BspT104I TTCGAA 1 cut(s) 692
BspTNI GGTCTC 1 cut(s) 344
BsrDI GCAATG 1 cut(s) 522
BsrFI RCCGGY 2 cut(s) 191, 460
BsrI ACTGG 4 cut(s) 60, 405, 469, 594
BssAI RCCGGY 2 cut(s) 191, 460
BssECI CCNNGG 1 cut(s) 303
BssMI GATC 5 cut(s) 72, 168, 421, 630, 889
BssNI GRCGYC 1 cut(s) 204
Bst2UI CCWGG 1 cut(s) 374
Bst4CI ACNGT 5 cut(s) 248, 430, 438, 560, 877
Bst6I CTCTTC 1 cut(s) 476
BstACI GRCGYC 1 cut(s) 204
BstAPI GCANNNNNTGC 1 cut(s) 47
BstBI TTCGAA 1 cut(s) 692
BstC8I GCNNGC 6 cut(s) 31, 63, 193, 233, 458, 462
BstDEI CTNAG 4 cut(s) 165, 623, 681, 886
BstENI CCTNNNNNAGG 2 cut(s) 302, 680
BstF5I GGATG 3 cut(s) 222, 382, 601
BstHHI GCGC 1 cut(s) 222
BstKTI GATC 5 cut(s) 75, 171, 424, 633, 892
BstMAI GTCTC 2 cut(s) 344, 580
BstMBI GATC 5 cut(s) 72, 168, 421, 630, 889
BstMWI GCNNNNNNNGC 3 cut(s) 47, 228, 403
BstNI CCWGG 1 cut(s) 374
BstNSI RCATGY 2 cut(s) 235, 739
BstSCI CCNGG 1 cut(s) 372
BstSFI CTRYAG 1 cut(s) 346
BstV2I GAAGAC 1 cut(s) 12
BstX2I RGATCY 3 cut(s) 168, 421, 889
BstYI RGATCY 3 cut(s) 168, 421, 889
Bsu36I CCTNAGG 1 cut(s) 681
BsuRI GGCC 6 cut(s) 65, 312, 353, 397, 487, 698
BtsCI GGATG 3 cut(s) 222, 382, 601
BtsI GCAGTG 1 cut(s) 613
BtsIMutI CAGTG 3 cut(s) 398, 426, 613
BveI ACCTGC 1 cut(s) 684
Cac8I GCNNGC 6 cut(s) 31, 63, 193, 233, 458, 462
CciI TCATGA 1 cut(s) 771
CfoI GCGC 1 cut(s) 222
Cfr10I RCCGGY 2 cut(s) 191, 460
Cfr13I GGNCC 2 cut(s) 351, 697
CseI GACGC 2 cut(s) 67, 212
Csp6I GTAC 4 cut(s) 466, 472, 551, 653
CviAII CATG 6 cut(s) 70, 232, 407, 722, 736, 772
CviQI GTAC 4 cut(s) 466, 472, 551, 653
DdeI CTNAG 4 cut(s) 165, 623, 681, 886
DpnI GATC 5 cut(s) 74, 170, 423, 632, 891
DpnII GATC 5 cut(s) 72, 168, 421, 630, 889
DraI TTTAAA 1 cut(s) 906
EaeI YGGCCR 3 cut(s) 63, 310, 395
Eam1104I CTCTTC 1 cut(s) 476
EarI CTCTTC 1 cut(s) 476
EciI GGCGGA 2 cut(s) 95, 148
Eco31I GGTCTC 1 cut(s) 344
Eco81I CCTNAGG 1 cut(s) 681
EcoNI CCTNNNNNAGG 2 cut(s) 302, 680
EcoO109I RGGNCCY 2 cut(s) 351, 697
EcoRII CCWGG 1 cut(s) 372
FaeI CATG 6 cut(s) 73, 235, 410, 725, 739, 775
FaqI GGGAC 2 cut(s) 65, 73
FatI CATG 6 cut(s) 69, 231, 406, 721, 735, 771
FauI CCCGC 1 cut(s) 604
FbaI TGATCA 2 cut(s) 72, 630
FokI GGATG 3 cut(s) 209, 389, 608
FspBI CTAG 3 cut(s) 320, 554, 753
GlaI GCGC 1 cut(s) 221
GsaI CCCAGC 1 cut(s) 704
GsuI CTGGAG 3 cut(s) 77, 200, 347
HaeIII GGCC 6 cut(s) 65, 312, 353, 397, 487, 698
HapII CCGG 5 cut(s) 138, 192, 461, 488, 711
HgaI GACGC 2 cut(s) 67, 212
HhaI GCGC 1 cut(s) 222
Hin1I GRCGYC 1 cut(s) 204
Hin1II CATG 6 cut(s) 73, 235, 410, 725, 739, 775
Hin6I GCGC 1 cut(s) 220
HinP1I GCGC 1 cut(s) 220
HinfI GANTC 1 cut(s) 718
HpaII CCGG 5 cut(s) 138, 192, 461, 488, 711
HphI GGTGA 7 cut(s) 212, 229, 292, 316, 592, 743, 770
Hpy166II GTNNAC 2 cut(s) 13, 785
Hpy188I TCNGA 3 cut(s) 168, 259, 283
Hpy188III TCNNGA 4 cut(s) 332, 442, 522, 772
Hpy8I GTNNAC 2 cut(s) 13, 785
Hpy99I CGWCG 3 cut(s) 104, 119, 278
HpyAV CCTTC 5 cut(s) 194, 439, 653, 688, 769
HpyCH4III ACNGT 5 cut(s) 248, 430, 438, 560, 877
HpyCH4IV ACGT 4 cut(s) 9, 114, 178, 762
HpyCH4V TGCA 3 cut(s) 380, 406, 508
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 228, 403
HpyF3I CTNAG 4 cut(s) 165, 623, 681, 886
HpySE526I ACGT 4 cut(s) 9, 114, 178, 762
Hsp92I GRCGYC 1 cut(s) 204
Hsp92II CATG 6 cut(s) 73, 235, 410, 725, 739, 775
HspAI GCGC 1 cut(s) 220
KroI GCCGGC 2 cut(s) 191, 460
KroNI GCCGGC 2 cut(s) 193, 462
Ksp22I TGATCA 2 cut(s) 72, 630
Kzo9I GATC 5 cut(s) 72, 168, 421, 630, 889
LmnI GCTCC 2 cut(s) 58, 284
LweI GCATC 4 cut(s) 112, 231, 367, 495
MaeI CTAG 3 cut(s) 320, 554, 753
MaeII ACGT 4 cut(s) 9, 114, 178, 762
MaeIII GTNAC 7 cut(s) 200, 322, 560, 580, 715, 731, 758
MalI GATC 5 cut(s) 74, 170, 423, 632, 891
MboI GATC 5 cut(s) 72, 168, 421, 630, 889
MboII GAAGA 3 cut(s) 17, 493, 760
MflI RGATCY 3 cut(s) 168, 421, 889
MhlI GDGCHC 1 cut(s) 264
MlsI TGGCCA 2 cut(s) 65, 397
MluCI AATT 4 cut(s) 747, 813, 900, 910
MluNI TGGCCA 2 cut(s) 65, 397
MlyI GAGTC 1 cut(s) 712
Mox20I TGGCCA 2 cut(s) 65, 397
MroNI GCCGGC 2 cut(s) 191, 460
MscI TGGCCA 2 cut(s) 65, 397
MseI TTAA 4 cut(s) 666, 899, 905, 916
MslI CAYNNNNRTG 2 cut(s) 375, 726
Msp20I TGGCCA 2 cut(s) 65, 397
MspI CCGG 5 cut(s) 138, 192, 461, 488, 711
MspR9I CCNGG 1 cut(s) 374
MvaI CCWGG 1 cut(s) 374
MwoI GCNNNNNNNGC 3 cut(s) 47, 228, 403
NaeI GCCGGC 2 cut(s) 193, 462
NdeII GATC 5 cut(s) 72, 168, 421, 630, 889
NgoMIV GCCGGC 2 cut(s) 191, 460
NlaIII CATG 6 cut(s) 73, 235, 410, 725, 739, 775
NlaIV GGNNCC 4 cut(s) 280, 423, 435, 699
NmeAIII GCCGAG 1 cut(s) 232
NmuCI GTSAC 6 cut(s) 200, 322, 580, 715, 731, 758
NspI RCATGY 2 cut(s) 235, 739
NspV TTCGAA 1 cut(s) 692
PaeI GCATGC 1 cut(s) 235
PagI TCATGA 1 cut(s) 771
PciI ACATGT 1 cut(s) 735
PdiI GCCGGC 2 cut(s) 193, 462
PleI GAGTC 1 cut(s) 712
PpsI GAGTC 1 cut(s) 712
PscI ACATGT 1 cut(s) 735
Psp6I CCWGG 1 cut(s) 372
PspFI CCCAGC 1 cut(s) 700
PspGI CCWGG 1 cut(s) 372
PspN4I GGNNCC 4 cut(s) 280, 423, 435, 699
PspPI GGNCC 2 cut(s) 351, 697
PsuI RGATCY 3 cut(s) 168, 421, 889
RsaI GTAC 4 cut(s) 467, 473, 552, 654
RsaNI GTAC 4 cut(s) 466, 472, 551, 653
RseI CAYNNNNRTG 2 cut(s) 375, 726
SaqAI TTAA 4 cut(s) 666, 899, 905, 916
Sau3AI GATC 5 cut(s) 72, 168, 421, 630, 889
Sau96I GGNCC 2 cut(s) 351, 697
ScaI AGTACT 2 cut(s) 473, 552
SchI GAGTC 1 cut(s) 712
ScrFI CCNGG 1 cut(s) 374
SduI GDGCHC 1 cut(s) 264
SfaNI GCATC 4 cut(s) 112, 231, 367, 495
SfcI CTRYAG 1 cut(s) 346
SfuI TTCGAA 1 cut(s) 692
SmiMI CAYNNNNRTG 2 cut(s) 375, 726
SphI GCATGC 1 cut(s) 235
Sse9I AATT 4 cut(s) 747, 813, 900, 910
SsiI CCGC 6 cut(s) 106, 159, 195, 229, 413, 611
SspMI CTAG 3 cut(s) 320, 554, 753
StyD4I CCNGG 1 cut(s) 372
TaaI ACNGT 5 cut(s) 248, 430, 438, 560, 877
TaiI ACGT 4 cut(s) 12, 117, 181, 765
TaqI TCGA 2 cut(s) 174, 692
TasI AATT 4 cut(s) 747, 813, 900, 910
TatI WGTACW 2 cut(s) 471, 550
Tru1I TTAA 4 cut(s) 666, 899, 905, 916
Tru9I TTAA 4 cut(s) 666, 899, 905, 916
TscAI CASTG 3 cut(s) 405, 433, 613
TseFI GTSAC 6 cut(s) 200, 322, 580, 715, 731, 758
Tsp45I GTSAC 6 cut(s) 200, 322, 580, 715, 731, 758
TspDTI ATGAA 5 cut(s) 509, 529, 760, 788, 814
TspRI CASTG 3 cut(s) 405, 433, 613
XagI CCTNNNNNAGG 2 cut(s) 302, 680
XceI RCATGY 2 cut(s) 235, 739
XcmI CCANNNNNNNNNTGG 1 cut(s) 58
XspI CTAG 3 cut(s) 320, 554, 753
ZrmI AGTACT 2 cut(s) 473, 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.