Prupe.7G123600_v2.0.a1

caffeic acid

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0011057
Physical Location & Seq
Forward (+)
14590668 .. 14594669
4002 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G123600.1

Sequence Viewer

Length: 1107 bp
ATGGAGAATCACGTCAGTCACGTGACCACCACCGCAGAGCAGCCCAGCAACGAAGCCAGACTGGGCATACTGGAGCTGGCCAACATGATCAGCGTCCCCATGTCCCTAAACGCCGTCGTTCGCCTCAACGTCCCCGATGCCATCTGGCAAGGCGGCTCAAACTCGCCCCTCTCCGCCTCCGCCATCCTCTCACATGTACTCCCCGACGGAGGCGGCGACGCCGAGAACCTCCAGCGCATCCTTCGCATGCTCACCAGCTACGGTGTGTTTGCGGAGCACCTGGTCAGCGCCGACGACGACGGCGGCTCCCATCAAAGAAAGTTCTCCCTCACCGAGATTGGTAAAACGCTCGTCACCGACCAAAACGGTCTGTCGTACGGCCCTTACATCCTCCAACACCACCAGGATGTGCTAATGGGGGCGTGGCCTATGGTGCATGAGGCTGTGGTGGACCCCACGATAGAGCCGTTCGTGAAGGTGAACGGTGAGCCGGCGTACGAGTACTATGGGAAGAAGCCGGAGATGAACGGCTTGATGCAGAGAGCAATGTCGGGTGTATCGGTGCCGTTCATGAAGGCAATATTGGACGGCTACGATGGATTTGAAGGAGTGGGGAGATTGGTTGATGTGGGTGGGAGTGCTGGGGATTGCCTGCGGATGATCCTACAGAAGCATCCTAGTGTTCGGGAAGGGATTAACTTTGATTTGCCTGAGGTCGTTGCCAAGGCACCAACTATAGCTGGAGTGAGTCATGTTGGTGGTGACATGTTCAAGTCAATTCCCAGTGGAGATGCTATTTTCATGAAGTGGGTTTTATCAACATGGACGGATAGCGAATGCAAGCTGATCATGGAGAATTGTTACAAAGCGCTTCCAGTAGGAGGGAAGCTGATAGCTTGTGAGCCGGTGTTGCCAACGAAATCAGACGACAGTCCTAGGACGCGTGCCCTCCTAGAAAACGACATATTCGTGATGACAATCTATAGGGCCAAGGGCAAGAATCGGACTGAGGATGAGTTACGGCAGCTTGGTCTCTCTGCTGGCTTCTCTCATTTCAAACCAATCTACATCGATTATTTTTACACCGTCTTAGAATTCCAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

369

Amino Acids

40.3

Weight (kDa)

5.39

Isoelectric Point (pI)

34.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011057)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53140
fragaria_vesca FvH4_6g17130 FvH4_6g17130 FvH4_6g17130
malus_domestica MD12G1103500.v1.1 MD14G1097900.v1.1
prunus_persica Prupe.7G123600_v2.0.a1
pyrus_communis pycom12g10200
rosa_chinensis RchiOBHm_Chr3g0471211
rosa_laevigata RLG00000024197
rosa_multiflora Rmu_co8165034.1_g000001 Rmu_sc0010073.1_g000018 Rmu_sc0031310.1_g000002
rosa_roxburghii Rroxscaffold_6G00410220
rosa_rugosa Rorug03G0116200
rosa_samantha Rh3AG165100 Rh3BG190700 Rh3CG181000 Rh3DG185100
rosa_wichuraiana Rw3G015570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 562, 727
AccII CGCG 1 cut(s) 943
AciI CCGC 8 cut(s) 33, 153, 174, 180, 213, 272, 303, 655
AclWI GGATC 1 cut(s) 655
AcoI YGGCCR 1 cut(s) 78
AcsI RAATTY 1 cut(s) 1094
AcvI CACGTG 1 cut(s) 22
AcyI GRCGYC 1 cut(s) 219
AfaI GTAC 4 cut(s) 198, 377, 497, 503
AfeI AGCGCT 1 cut(s) 870
AfiI CCNNNNNNNGG 2 cut(s) 209, 881
AflIII ACRYGT 3 cut(s) 193, 765, 941
AgsI TTSAA 3 cut(s) 605, 772, 1057
AjiI CACGTC 1 cut(s) 13
AjnI CCWGG 2 cut(s) 279, 402
AjuI GAANNNNNNNTTGG 2 cut(s) 566, 598
AluBI AGCT 7 cut(s) 76, 258, 740, 844, 889, 896, 1027
AluI AGCT 7 cut(s) 76, 258, 740, 844, 889, 896, 1027
Alw21I GWGCWC 1 cut(s) 279
Alw26I GTCTC 1 cut(s) 1037
AlwI GGATC 1 cut(s) 655
Aor51HI AGCGCT 1 cut(s) 870
AoxI GGCC 4 cut(s) 78, 379, 425, 987
ApeKI GCWGC 2 cut(s) 40, 1024
ApoI RAATTY 1 cut(s) 1094
AspA2I CCTAGG 1 cut(s) 935
AspLEI GCGC 3 cut(s) 237, 290, 871
AspS9I GGNCC 3 cut(s) 380, 451, 987
AsuHPI GGTGA 6 cut(s) 244, 322, 346, 490, 497, 773
AvaII GGWCC 1 cut(s) 451
AvrII CCTAGG 1 cut(s) 935
AxyI CCTNAGG 1 cut(s) 711
BaeGI GKGCMC 1 cut(s) 949
BalI TGGCCA 1 cut(s) 80
BanI GGYRCC 2 cut(s) 562, 727
BbrPI CACGTG 1 cut(s) 22
Bbv12I GWGCWC 1 cut(s) 279
BbvI GCAGC 2 cut(s) 52, 1036
BccI CCATC 4 cut(s) 149, 191, 318, 590
BceAI ACGGC 8 cut(s) 98, 316, 394, 451, 544, 550, 604, 1037
BciT130I CCWGG 2 cut(s) 281, 404
BclI TGATCA 2 cut(s) 87, 846
BcoDI GTCTC 1 cut(s) 1037
BfaI CTAG 3 cut(s) 678, 936, 953
BfmI CTRYAG 3 cut(s) 665, 735, 982
BfoI RGCGCY 2 cut(s) 291, 872
BisI GCNGC 5 cut(s) 41, 154, 214, 304, 1025
BlnI CCTAGG 1 cut(s) 935
BlsI GCNGC 5 cut(s) 42, 155, 215, 305, 1026
BmcAI AGTACT 1 cut(s) 503
Bme1390I CCNGG 2 cut(s) 281, 404
Bme18I GGWCC 1 cut(s) 451
BmgBI CACGTC 1 cut(s) 13
BmgT120I GGNCC 3 cut(s) 380, 451, 987
BmiI GGNNCC 4 cut(s) 307, 453, 564, 729
BmrFI CCNGG 2 cut(s) 281, 404
BmrI ACTGGG 2 cut(s) 71, 777
BmsI GCATC 5 cut(s) 127, 246, 525, 682, 781
BmuI ACTGGG 2 cut(s) 71, 777
BoxI GACNNNNGTC 1 cut(s) 930
BpmI CTGGAG 3 cut(s) 92, 215, 762
Bsa29I ATCGAT 1 cut(s) 1071
BsaAI YACGTR 1 cut(s) 22
BsaBI GATNNNNATC 1 cut(s) 977
BsaHI GRCGYC 1 cut(s) 219
BsaI GGTCTC 1 cut(s) 1037
BsaJI CCNNGG 3 cut(s) 723, 935, 990
BsaXI ACNNNNNCTCC 4 cut(s) 183, 213, 290, 320
Bsc4I CCNNNNNNNGG 2 cut(s) 209, 881
Bse118I RCCGGY 2 cut(s) 490, 904
Bse1I ACTGG 4 cut(s) 66, 75, 783, 875
Bse21I CCTNAGG 1 cut(s) 711
Bse3DI GCAATG 1 cut(s) 552
Bse8I GATNNNNATC 1 cut(s) 977
BseBI CCWGG 2 cut(s) 281, 404
BseCI ATCGAT 1 cut(s) 1071
BseDI CCNNGG 3 cut(s) 723, 935, 990
BseGI GGATG 7 cut(s) 183, 237, 387, 412, 663, 673, 1018
BseJI GATNNNNATC 1 cut(s) 977
BseLI CCNNNNNNNGG 2 cut(s) 209, 881
BseMI GCAATG 1 cut(s) 552
BseMII CTCAG 2 cut(s) 702, 999
BseNI ACTGG 4 cut(s) 66, 75, 783, 875
BseSI GKGCMC 1 cut(s) 949
BseXI GCAGC 2 cut(s) 52, 1036
BseYI CCCAGC 2 cut(s) 44, 641
Bsh1236I CGCG 1 cut(s) 943
BshFI GGCC 4 cut(s) 80, 381, 427, 989
BshNI GGYRCC 2 cut(s) 562, 727
BshVI ATCGAT 1 cut(s) 1071
BsiHKAI GWGCWC 1 cut(s) 279
BsiSI CCGG 3 cut(s) 491, 518, 905
BsiWI CGTACG 2 cut(s) 375, 495
BslFI GGGAC 3 cut(s) 80, 88, 116
BslI CCNNNNNNNGG 2 cut(s) 209, 881
BsmAI GTCTC 1 cut(s) 1037
BsmFI GGGAC 3 cut(s) 80, 88, 116
BsmI GAATGC 1 cut(s) 842
BsnI GGCC 4 cut(s) 80, 381, 427, 989
Bso31I GGTCTC 1 cut(s) 1037
Bsp1286I GDGCHC 2 cut(s) 279, 949
Bsp143I GATC 3 cut(s) 87, 660, 846
BspACI CCGC 8 cut(s) 33, 153, 174, 180, 213, 272, 303, 655
BspANI GGCC 4 cut(s) 80, 381, 427, 989
BspCNI CTCAG 2 cut(s) 703, 1000
BspDI ATCGAT 1 cut(s) 1071
BspFNI CGCG 1 cut(s) 943
BspHI TCATGA 2 cut(s) 570, 801
BspLI GGNNCC 4 cut(s) 307, 453, 564, 729
BspPI GGATC 1 cut(s) 655
BspT107I GGYRCC 2 cut(s) 562, 727
BspTNI GGTCTC 1 cut(s) 1037
BsrDI GCAATG 1 cut(s) 552
BsrFI RCCGGY 2 cut(s) 490, 904
BsrI ACTGG 4 cut(s) 66, 75, 783, 875
BssAI RCCGGY 2 cut(s) 490, 904
BssECI CCNNGG 3 cut(s) 723, 935, 990
BssMI GATC 3 cut(s) 87, 660, 846
BssNI GRCGYC 1 cut(s) 219
BssT1I CCWWGG 3 cut(s) 723, 935, 990
Bst2UI CCWGG 2 cut(s) 281, 404
Bst4CI ACNGT 5 cut(s) 263, 368, 485, 932, 1087
BstACI GRCGYC 1 cut(s) 219
BstBAI YACGTR 1 cut(s) 22
BstC8I GCNNGC 7 cut(s) 78, 248, 492, 653, 842, 945, 1042
BstDEI CTNAG 3 cut(s) 711, 1008, 1090
BstF5I GGATG 7 cut(s) 183, 237, 387, 412, 663, 673, 1018
BstFNI CGCG 1 cut(s) 943
BstH2I RGCGCY 2 cut(s) 291, 872
BstHHI GCGC 3 cut(s) 237, 290, 871
BstKTI GATC 3 cut(s) 90, 663, 849
BstMAI GTCTC 1 cut(s) 1037
BstMBI GATC 3 cut(s) 87, 660, 846
BstMWI GCNNNNNNNGC 3 cut(s) 243, 433, 910
BstNI CCWGG 2 cut(s) 281, 404
BstNSI RCATGY 3 cut(s) 197, 250, 769
BstPAI GACNNNNGTC 1 cut(s) 930
BstSCI CCNGG 2 cut(s) 279, 402
BstSFI CTRYAG 3 cut(s) 665, 735, 982
BstSLI GKGCMC 1 cut(s) 949
BstUI CGCG 1 cut(s) 943
BstV1I GCAGC 2 cut(s) 52, 1036
Bsu15I ATCGAT 1 cut(s) 1071
Bsu36I CCTNAGG 1 cut(s) 711
BsuRI GGCC 4 cut(s) 80, 381, 427, 989
BsuTUI ATCGAT 1 cut(s) 1071
BtrI CACGTC 1 cut(s) 13
BtsCI GGATG 7 cut(s) 183, 237, 387, 412, 663, 673, 1018
BtsIMutI CAGTG 1 cut(s) 790
Cac8I GCNNGC 7 cut(s) 78, 248, 492, 653, 842, 945, 1042
CciI TCATGA 2 cut(s) 570, 801
CfoI GCGC 3 cut(s) 237, 290, 871
Cfr10I RCCGGY 2 cut(s) 490, 904
Cfr13I GGNCC 3 cut(s) 380, 451, 987
ClaI ATCGAT 1 cut(s) 1071
CseI GACGC 3 cut(s) 82, 227, 949
CsiI ACCWGGT 1 cut(s) 279
Csp6I GTAC 4 cut(s) 197, 376, 496, 502
CviQI GTAC 4 cut(s) 197, 376, 496, 502
DdeI CTNAG 3 cut(s) 711, 1008, 1090
DpnI GATC 3 cut(s) 89, 662, 848
DpnII GATC 3 cut(s) 87, 660, 846
EaeI YGGCCR 1 cut(s) 78
EciI GGCGGA 2 cut(s) 163, 169
Eco130I CCWWGG 3 cut(s) 723, 935, 990
Eco31I GGTCTC 1 cut(s) 1037
Eco47I GGWCC 1 cut(s) 451
Eco47III AGCGCT 1 cut(s) 870
Eco72I CACGTG 1 cut(s) 22
Eco81I CCTNAGG 1 cut(s) 711
EcoRI GAATTC 1 cut(s) 1094
EcoRII CCWGG 2 cut(s) 279, 402
EcoT14I CCWWGG 3 cut(s) 723, 935, 990
ErhI CCWWGG 3 cut(s) 723, 935, 990
FaqI GGGAC 3 cut(s) 80, 88, 116
FbaI TGATCA 2 cut(s) 87, 846
Fnu4HI GCNGC 5 cut(s) 41, 154, 214, 304, 1025
FokI GGATG 7 cut(s) 170, 224, 374, 419, 660, 670, 1025
Fsp4HI GCNGC 5 cut(s) 41, 154, 214, 304, 1025
FspBI CTAG 3 cut(s) 678, 936, 953
GlaI GCGC 3 cut(s) 236, 289, 870
GluI GCNGC 5 cut(s) 41, 154, 214, 304, 1025
GsaI CCCAGC 2 cut(s) 48, 645
GsuI CTGGAG 3 cut(s) 92, 215, 762
HaeII RGCGCY 2 cut(s) 291, 872
HaeIII GGCC 4 cut(s) 80, 381, 427, 989
HapII CCGG 3 cut(s) 491, 518, 905
HgaI GACGC 3 cut(s) 82, 227, 949
HhaI GCGC 3 cut(s) 237, 290, 871
Hin1I GRCGYC 1 cut(s) 219
Hin6I GCGC 3 cut(s) 235, 288, 869
HinP1I GCGC 3 cut(s) 235, 288, 869
HinfI GANTC 3 cut(s) 7, 748, 1000
HpaII CCGG 3 cut(s) 491, 518, 905
HphI GGTGA 6 cut(s) 244, 322, 346, 490, 497, 773
Hpy166II GTNNAC 2 cut(s) 451, 481
Hpy188I TCNGA 2 cut(s) 925, 1005
Hpy188III TCNNGA 5 cut(s) 472, 571, 686, 802, 970
Hpy8I GTNNAC 2 cut(s) 451, 481
Hpy99I CGWCG 6 cut(s) 119, 209, 221, 296, 299, 302
HpyAV CCTTC 5 cut(s) 251, 469, 568, 599, 683
HpyCH4III ACNGT 5 cut(s) 263, 368, 485, 932, 1087
HpyCH4IV ACGT 3 cut(s) 12, 21, 129
HpyCH4V TGCA 3 cut(s) 436, 538, 840
HpyF10VI GCNNNNNNNGC 3 cut(s) 243, 433, 910
HpyF3I CTNAG 3 cut(s) 711, 1008, 1090
HpySE526I ACGT 3 cut(s) 12, 21, 129
Hsp92I GRCGYC 1 cut(s) 219
HspAI GCGC 3 cut(s) 235, 288, 869
KroI GCCGGC 1 cut(s) 490
KroNI GCCGGC 1 cut(s) 492
Ksp22I TGATCA 2 cut(s) 87, 846
Kzo9I GATC 3 cut(s) 87, 660, 846
LmnI GCTCC 3 cut(s) 73, 274, 311
Lsp1109I GCAGC 2 cut(s) 52, 1036
LweI GCATC 5 cut(s) 127, 246, 525, 682, 781
MabI ACCWGGT 1 cut(s) 279
MaeI CTAG 3 cut(s) 678, 936, 953
MaeII ACGT 3 cut(s) 12, 21, 129
MaeIII GTNAC 6 cut(s) 17, 22, 352, 761, 860, 1017
MalI GATC 3 cut(s) 89, 662, 848
MboI GATC 3 cut(s) 87, 660, 846
MboII GAAGA 1 cut(s) 523
MhlI GDGCHC 2 cut(s) 279, 949
MlsI TGGCCA 1 cut(s) 80
MluCI AATT 3 cut(s) 777, 856, 1094
MluI ACGCGT 1 cut(s) 941
MluNI TGGCCA 1 cut(s) 80
MlyI GAGTC 1 cut(s) 757
MmeI TCCRAC 1 cut(s) 418
Mox20I TGGCCA 1 cut(s) 80
MroNI GCCGGC 1 cut(s) 490
MscI TGGCCA 1 cut(s) 80
MseI TTAA 1 cut(s) 696
MslI CAYNNNNRTG 4 cut(s) 405, 678, 756, 968
Msp20I TGGCCA 1 cut(s) 80
MspI CCGG 3 cut(s) 491, 518, 905
MspR9I CCNGG 2 cut(s) 281, 404
Mva1269I GAATGC 1 cut(s) 842
MvaI CCWGG 2 cut(s) 281, 404
MvnI CGCG 1 cut(s) 943
MwoI GCNNNNNNNGC 3 cut(s) 243, 433, 910
NaeI GCCGGC 1 cut(s) 492
NdeII GATC 3 cut(s) 87, 660, 846
NgoMIV GCCGGC 1 cut(s) 490
NlaIV GGNNCC 4 cut(s) 307, 453, 564, 729
NmeAIII GCCGAG 1 cut(s) 247
NmuCI GTSAC 4 cut(s) 17, 22, 352, 761
NspI RCATGY 3 cut(s) 197, 250, 769
PaeI GCATGC 1 cut(s) 250
PagI TCATGA 2 cut(s) 570, 801
PciI ACATGT 2 cut(s) 193, 765
PcsI WCGNNNNNNNCGW 4 cut(s) 18, 213, 464, 966
PctI GAATGC 1 cut(s) 842
PdiI GCCGGC 1 cut(s) 492
PfeI GAWTC 2 cut(s) 7, 1000
Pfl23II CGTACG 2 cut(s) 375, 495
PkrI GCNGC 5 cut(s) 42, 155, 215, 305, 1026
PleI GAGTC 1 cut(s) 756
PmaCI CACGTG 1 cut(s) 22
PmlI CACGTG 1 cut(s) 22
PpsI GAGTC 1 cut(s) 756
Ppu21I YACGTR 1 cut(s) 22
PscI ACATGT 2 cut(s) 193, 765
PshAI GACNNNNGTC 1 cut(s) 930
Psp6I CCWGG 2 cut(s) 279, 402
PspCI CACGTG 1 cut(s) 22
PspFI CCCAGC 2 cut(s) 44, 641
PspGI CCWGG 2 cut(s) 279, 402
PspLI CGTACG 2 cut(s) 375, 495
PspN4I GGNNCC 4 cut(s) 307, 453, 564, 729
PspPI GGNCC 3 cut(s) 380, 451, 987
RsaI GTAC 4 cut(s) 198, 377, 497, 503
RsaNI GTAC 4 cut(s) 197, 376, 496, 502
RseI CAYNNNNRTG 4 cut(s) 405, 678, 756, 968
SaqAI TTAA 1 cut(s) 696
SatI GCNGC 5 cut(s) 41, 154, 214, 304, 1025
Sau3AI GATC 3 cut(s) 87, 660, 846
Sau96I GGNCC 3 cut(s) 380, 451, 987
ScaI AGTACT 1 cut(s) 503
SchI GAGTC 1 cut(s) 757
ScrFI CCNGG 2 cut(s) 281, 404
SduI GDGCHC 2 cut(s) 279, 949
SexAI ACCWGGT 1 cut(s) 279
SfaNI GCATC 5 cut(s) 127, 246, 525, 682, 781
SfcI CTRYAG 3 cut(s) 665, 735, 982
SinI GGWCC 1 cut(s) 451
SmiMI CAYNNNNRTG 4 cut(s) 405, 678, 756, 968
SphI GCATGC 1 cut(s) 250
Sse9I AATT 3 cut(s) 777, 856, 1094
SsiI CCGC 8 cut(s) 33, 153, 174, 180, 213, 272, 303, 655
SspI AATATT 1 cut(s) 582
SspMI CTAG 3 cut(s) 678, 936, 953
StyD4I CCNGG 2 cut(s) 279, 402
StyI CCWWGG 3 cut(s) 723, 935, 990
TaaI ACNGT 5 cut(s) 263, 368, 485, 932, 1087
TaiI ACGT 3 cut(s) 15, 24, 132
TaqI TCGA 1 cut(s) 1071
TasI AATT 3 cut(s) 777, 856, 1094
TatI WGTACW 2 cut(s) 196, 501
TauI GCSGC 3 cut(s) 156, 216, 306
TfiI GAWTC 2 cut(s) 7, 1000
Tru1I TTAA 1 cut(s) 696
Tru9I TTAA 1 cut(s) 696
TscAI CASTG 1 cut(s) 790
TseFI GTSAC 4 cut(s) 17, 22, 352, 761
TseI GCWGC 2 cut(s) 40, 1024
Tsp45I GTSAC 4 cut(s) 17, 22, 352, 761
TspDTI ATGAA 5 cut(s) 539, 559, 587, 790, 818
TspGWI ACGGA 2 cut(s) 222, 842
TspRI CASTG 1 cut(s) 790
VpaK11BI GGWCC 1 cut(s) 451
XapI RAATTY 1 cut(s) 1094
XceI RCATGY 3 cut(s) 197, 250, 769
XmaJI CCTAGG 1 cut(s) 935
XspI CTAG 3 cut(s) 678, 936, 953
ZrmI AGTACT 1 cut(s) 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.