Rmu_co8165034.1_g000001

caffeic acid

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8165034.1
OG0011057
Physical Location & Seq
Forward (+)
1 .. 666
666 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8165034.1_g000001.1.cds

Sequence Viewer

Length: 464 bp
ctcaccagctacggtgtgttctccgagcacttcaacgccgacggctccgagagaaagttctccctcaccgaggtcggccaaaccctagtcaccaatcaagatggtctctcctatagtgcctatgtcctccagcaccaccaggatgcactaatgggggcgtggccactggtgcatgaggcggtggtggatcccactgtggaaccgttcgtgaaggcgaacggcgagccggcgtaccagtactacgggaagaggccggagatgaatgggttgatgcaaaaggcaatgtcgggagtatctgtgccgttcatcaaggcagtactagacggttacgatggttttcaaggggtgacgagactggtggatgtgggtggcagtgcgggagattgcctgagaatgatcatagacaaatatcccaatgtacgggaaggcattaactttgacctacctgaggtcgtttcgaaggc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

155

Amino Acids

16.96

Weight (kDa)

4.95

Isoelectric Point (pI)

26.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011057)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53140
fragaria_vesca FvH4_6g17130 FvH4_6g17130 FvH4_6g17130
malus_domestica MD12G1103500.v1.1 MD14G1097900.v1.1
prunus_persica Prupe.7G123600_v2.0.a1
pyrus_communis pycom12g10200
rosa_chinensis RchiOBHm_Chr3g0471211
rosa_laevigata RLG00000024197
rosa_multiflora Rmu_co8165034.1_g000001 Rmu_sc0010073.1_g000018 Rmu_sc0031310.1_g000002
rosa_roxburghii Rroxscaffold_6G00410220
rosa_rugosa Rorug03G0116200
rosa_samantha Rh3AG165100 Rh3BG190700 Rh3CG181000 Rh3DG185100
rosa_wichuraiana Rw3G015570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 179, 377
AclWI GGATC 2 cut(s) 182, 195
AcoI YGGCCR 2 cut(s) 76, 161
AfaI GTAC 4 cut(s) 233, 239, 318, 420
AfiI CCNNNNNNNGG 3 cut(s) 70, 420, 448
AgsI TTSAA 2 cut(s) 34, 341
AjnI CCWGG 1 cut(s) 138
AluBI AGCT 1 cut(s) 9
AluI AGCT 1 cut(s) 9
Alw21I GWGCWC 1 cut(s) 30
Alw26I GTCTC 2 cut(s) 110, 346
AlwI GGATC 2 cut(s) 182, 195
AoxI GGCC 3 cut(s) 76, 161, 251
AsuHPI GGTGA 3 cut(s) 58, 82, 358
AsuII TTCGAA 1 cut(s) 458
AxyI CCTNAGG 1 cut(s) 447
BalI TGGCCA 1 cut(s) 163
BamHI GGATCC 1 cut(s) 187
Bbv12I GWGCWC 1 cut(s) 30
BccI CCATC 2 cut(s) 95, 326
BceAI ACGGC 3 cut(s) 58, 235, 286
BciT130I CCWGG 1 cut(s) 140
BclI TGATCA 1 cut(s) 396
BcoDI GTCTC 2 cut(s) 110, 346
BfaI CTAG 2 cut(s) 86, 320
BfmI CTRYAG 1 cut(s) 112
BmcAI AGTACT 2 cut(s) 239, 318
Bme1390I CCNGG 1 cut(s) 140
BmiI GGNNCC 3 cut(s) 46, 189, 201
BmrFI CCNGG 1 cut(s) 140
BmsI GCATC 2 cut(s) 133, 261
BpmI CTGGAG 1 cut(s) 113
Bpu14I TTCGAA 1 cut(s) 458
BsaI GGTCTC 1 cut(s) 110
BsaJI CCNNGG 1 cut(s) 69
BsaXI ACNNNNNCTCC 2 cut(s) 282, 312
Bsc4I CCNNNNNNNGG 3 cut(s) 70, 420, 448
Bse118I RCCGGY 1 cut(s) 226
Bse1I ACTGG 3 cut(s) 171, 235, 360
Bse21I CCTNAGG 1 cut(s) 447
Bse3DI GCAATG 1 cut(s) 288
BseBI CCWGG 1 cut(s) 140
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 2 cut(s) 148, 367
BseLI CCNNNNNNNGG 3 cut(s) 70, 420, 448
BseMI GCAATG 1 cut(s) 288
BseMII CTCAG 2 cut(s) 380, 438
BseNI ACTGG 3 cut(s) 171, 235, 360
BshFI GGCC 3 cut(s) 78, 163, 253
BsiHKAI GWGCWC 1 cut(s) 30
BsiSI CCGG 2 cut(s) 227, 254
BslI CCNNNNNNNGG 3 cut(s) 70, 420, 448
BsmAI GTCTC 2 cut(s) 110, 346
BsnI GGCC 3 cut(s) 78, 163, 253
Bso31I GGTCTC 1 cut(s) 110
Bsp119I TTCGAA 1 cut(s) 458
Bsp1286I GDGCHC 1 cut(s) 30
Bsp143I GATC 2 cut(s) 187, 396
BspACI CCGC 2 cut(s) 179, 377
BspANI GGCC 3 cut(s) 78, 163, 253
BspCNI CTCAG 2 cut(s) 381, 439
BspLI GGNNCC 3 cut(s) 46, 189, 201
BspPI GGATC 2 cut(s) 182, 195
BspT104I TTCGAA 1 cut(s) 458
BspTNI GGTCTC 1 cut(s) 110
BsrDI GCAATG 1 cut(s) 288
BsrFI RCCGGY 1 cut(s) 226
BsrI ACTGG 3 cut(s) 171, 235, 360
BssAI RCCGGY 1 cut(s) 226
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 2 cut(s) 187, 396
Bst2UI CCWGG 1 cut(s) 140
Bst4CI ACNGT 4 cut(s) 14, 196, 204, 326
Bst6I CTCTTC 1 cut(s) 242
BstBI TTCGAA 1 cut(s) 458
BstC8I GCNNGC 2 cut(s) 224, 228
BstDEI CTNAG 2 cut(s) 389, 447
BstENI CCTNNNNNAGG 2 cut(s) 68, 446
BstF5I GGATG 2 cut(s) 148, 367
BstKTI GATC 2 cut(s) 190, 399
BstMAI GTCTC 2 cut(s) 110, 346
BstMBI GATC 2 cut(s) 187, 396
BstMWI GCNNNNNNNGC 1 cut(s) 169
BstNI CCWGG 1 cut(s) 140
BstSCI CCNGG 1 cut(s) 138
BstSFI CTRYAG 1 cut(s) 112
BstX2I RGATCY 1 cut(s) 187
BstYI RGATCY 1 cut(s) 187
Bsu36I CCTNAGG 1 cut(s) 447
BsuRI GGCC 3 cut(s) 78, 163, 253
BtsCI GGATG 2 cut(s) 148, 367
BtsI GCAGTG 1 cut(s) 379
BtsIMutI CAGTG 3 cut(s) 164, 192, 379
Cac8I GCNNGC 2 cut(s) 224, 228
Cfr10I RCCGGY 1 cut(s) 226
Csp6I GTAC 4 cut(s) 232, 238, 317, 419
CviAII CATG 1 cut(s) 173
CviJI RGCY 6 cut(s) 9, 45, 78, 163, 226, 253
CviKI_1 RGCY 6 cut(s) 9, 45, 78, 163, 226, 253
CviQI GTAC 4 cut(s) 232, 238, 317, 419
DdeI CTNAG 2 cut(s) 389, 447
DpnI GATC 2 cut(s) 189, 398
DpnII GATC 2 cut(s) 187, 396
EaeI YGGCCR 2 cut(s) 76, 161
Eam1104I CTCTTC 1 cut(s) 242
EarI CTCTTC 1 cut(s) 242
Eco31I GGTCTC 1 cut(s) 110
Eco81I CCTNAGG 1 cut(s) 447
EcoNI CCTNNNNNAGG 2 cut(s) 68, 446
EcoRII CCWGG 1 cut(s) 138
FaeI CATG 1 cut(s) 176
FaiI YATR 4 cut(s) 114, 123, 174, 401
FatI CATG 1 cut(s) 172
FauI CCCGC 1 cut(s) 370
FbaI TGATCA 1 cut(s) 396
FokI GGATG 2 cut(s) 155, 374
FspBI CTAG 2 cut(s) 86, 320
GsuI CTGGAG 1 cut(s) 113
HaeIII GGCC 3 cut(s) 78, 163, 253
HapII CCGG 2 cut(s) 227, 254
Hin1II CATG 1 cut(s) 176
HpaII CCGG 2 cut(s) 227, 254
HphI GGTGA 3 cut(s) 58, 82, 358
Hpy188I TCNGA 2 cut(s) 25, 49
Hpy188III TCNNGA 3 cut(s) 98, 208, 288
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 3 cut(s) 205, 419, 454
HpyCH4III ACNGT 4 cut(s) 14, 196, 204, 326
HpyCH4V TGCA 3 cut(s) 146, 172, 274
HpyF10VI GCNNNNNNNGC 1 cut(s) 169
HpyF3I CTNAG 2 cut(s) 389, 447
Hsp92II CATG 1 cut(s) 176
KroI GCCGGC 1 cut(s) 226
KroNI GCCGGC 1 cut(s) 228
Ksp22I TGATCA 1 cut(s) 396
Kzo9I GATC 2 cut(s) 187, 396
LmnI GCTCC 1 cut(s) 50
LweI GCATC 2 cut(s) 133, 261
MaeI CTAG 2 cut(s) 86, 320
MaeIII GTNAC 3 cut(s) 88, 326, 346
MalI GATC 2 cut(s) 189, 398
MboI GATC 2 cut(s) 187, 396
MboII GAAGA 1 cut(s) 259
MflI RGATCY 1 cut(s) 187
MhlI GDGCHC 1 cut(s) 30
MlsI TGGCCA 1 cut(s) 163
MluNI TGGCCA 1 cut(s) 163
MnlI CCTC 6 cut(s) 64, 74, 137, 169, 243, 442
Mox20I TGGCCA 1 cut(s) 163
MroNI GCCGGC 1 cut(s) 226
MscI TGGCCA 1 cut(s) 163
MseI TTAA 1 cut(s) 432
MslI CAYNNNNRTG 1 cut(s) 141
Msp20I TGGCCA 1 cut(s) 163
MspI CCGG 2 cut(s) 227, 254
MspR9I CCNGG 1 cut(s) 140
MvaI CCWGG 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 169
NaeI GCCGGC 1 cut(s) 228
NdeII GATC 2 cut(s) 187, 396
NgoMIV GCCGGC 1 cut(s) 226
NlaIII CATG 1 cut(s) 176
NlaIV GGNNCC 3 cut(s) 46, 189, 201
NmuCI GTSAC 2 cut(s) 88, 346
NspV TTCGAA 1 cut(s) 458
PdiI GCCGGC 1 cut(s) 228
Psp6I CCWGG 1 cut(s) 138
PspGI CCWGG 1 cut(s) 138
PspN4I GGNNCC 3 cut(s) 46, 189, 201
PsuI RGATCY 1 cut(s) 187
RsaI GTAC 4 cut(s) 233, 239, 318, 420
RsaNI GTAC 4 cut(s) 232, 238, 317, 419
RseI CAYNNNNRTG 1 cut(s) 141
SaqAI TTAA 1 cut(s) 432
Sau3AI GATC 2 cut(s) 187, 396
ScaI AGTACT 2 cut(s) 239, 318
ScrFI CCNGG 1 cut(s) 140
SduI GDGCHC 1 cut(s) 30
SetI ASST 5 cut(s) 11, 75, 444, 448, 453
SfaNI GCATC 2 cut(s) 133, 261
SfcI CTRYAG 1 cut(s) 112
SfuI TTCGAA 1 cut(s) 458
SmiMI CAYNNNNRTG 1 cut(s) 141
SsiI CCGC 2 cut(s) 179, 377
SspMI CTAG 2 cut(s) 86, 320
StyD4I CCNGG 1 cut(s) 138
TaaI ACNGT 4 cut(s) 14, 196, 204, 326
TaqI TCGA 1 cut(s) 458
TatI WGTACW 2 cut(s) 237, 316
Tru1I TTAA 1 cut(s) 432
Tru9I TTAA 1 cut(s) 432
TscAI CASTG 3 cut(s) 171, 199, 379
TseFI GTSAC 2 cut(s) 88, 346
Tsp45I GTSAC 2 cut(s) 88, 346
TspDTI ATGAA 2 cut(s) 275, 295
TspRI CASTG 3 cut(s) 171, 199, 379
XagI CCTNNNNNAGG 2 cut(s) 68, 446
XspI CTAG 2 cut(s) 86, 320
ZrmI AGTACT 2 cut(s) 239, 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.