Rmu_sc0031310.1_g000002

caffeic acid

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0031310.1
OG0011057
Physical Location & Seq
Reverse (-)
10403 .. 11333
931 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0031310.1_g000002.1.cds

Sequence Viewer

Length: 729 bp
atggaagacgtaaaccgaaccaaagaggcaagcaacgaagcaaggattgccatactggagctggccaacatgatcagcgtccctatgtccctaaacgccgtcgtccgcctcaacgtcgccgatgccatctggcaatccggctctaacacccccctctccgcctctcagatccttgaacgtgtccttcctgccggcggtggtgacgccgagaacctccagcgcatcctccgcatgctcaccagctacggtgtgttctccgagcacttcaacgccgacggctccgagagaaagttctccctcaccgaggtcggccaaaccctagtcaccaatcaagatggtctctcctatagtgcctatgtcctccagcaccaccaggatgcactaatgggggcgtggccactggtgcatgaggcggtggtggatcccactgtggaaccgttcgtgaaggcgaacggcgagccggcgtaccagtactacgggaagaggccggagatgaatgggttgatgcagaaggcaatgtcgggagtatctgtgccgttcatcaaggcagtactagacggttacgatggttttcaaggggtgacgagactggtggatgtgggtggcagtgcgggagattgcctgagaatgatcatagacaaatatcccaatgtacgggaaggcattaactttgacctacctgaggtcgtttcgaaggccccagctatcgccggtgagatattttcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

242

Amino Acids

26.26

Weight (kDa)

4.86

Isoelectric Point (pI)

34.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011057)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53140
fragaria_vesca FvH4_6g17130 FvH4_6g17130 FvH4_6g17130
malus_domestica MD12G1103500.v1.1 MD14G1097900.v1.1
prunus_persica Prupe.7G123600_v2.0.a1
pyrus_communis pycom12g10200
rosa_chinensis RchiOBHm_Chr3g0471211
rosa_laevigata RLG00000024197
rosa_multiflora Rmu_co8165034.1_g000001 Rmu_sc0010073.1_g000018 Rmu_sc0031310.1_g000002
rosa_roxburghii Rroxscaffold_6G00410220
rosa_rugosa Rorug03G0116200
rosa_samantha Rh3AG165100 Rh3BG190700 Rh3CG181000 Rh3DG185100
rosa_wichuraiana Rw3G015570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 106, 159, 195, 229, 413, 611
AclWI GGATC 3 cut(s) 163, 416, 429
AcoI YGGCCR 3 cut(s) 63, 310, 395
AcyI GRCGYC 1 cut(s) 204
AfaI GTAC 4 cut(s) 467, 473, 552, 654
AfiI CCNNNNNNNGG 4 cut(s) 194, 304, 654, 682
AflIII ACRYGT 1 cut(s) 178
AgsI TTSAA 3 cut(s) 176, 268, 575
AjnI CCWGG 1 cut(s) 372
AluBI AGCT 3 cut(s) 61, 243, 704
AluI AGCT 3 cut(s) 61, 243, 704
Alw21I GWGCWC 1 cut(s) 264
Alw26I GTCTC 2 cut(s) 344, 580
AlwI GGATC 3 cut(s) 163, 416, 429
AoxI GGCC 5 cut(s) 63, 310, 395, 485, 696
AspLEI GCGC 1 cut(s) 222
AspS9I GGNCC 1 cut(s) 697
AsuHPI GGTGA 6 cut(s) 212, 229, 292, 316, 592, 725
AsuII TTCGAA 1 cut(s) 692
AxyI CCTNAGG 1 cut(s) 681
BalI TGGCCA 2 cut(s) 65, 397
BamHI GGATCC 1 cut(s) 421
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 264
BccI CCATC 3 cut(s) 134, 329, 560
BceAI ACGGC 4 cut(s) 83, 292, 469, 520
BciT130I CCWGG 1 cut(s) 374
BclI TGATCA 2 cut(s) 72, 630
BcoDI GTCTC 2 cut(s) 344, 580
BfaI CTAG 2 cut(s) 320, 554
BfmI CTRYAG 1 cut(s) 346
BmcAI AGTACT 2 cut(s) 473, 552
Bme1390I CCNGG 1 cut(s) 374
BmgT120I GGNCC 1 cut(s) 697
BmiI GGNNCC 4 cut(s) 280, 423, 435, 699
BmrFI CCNGG 1 cut(s) 374
BmsI GCATC 4 cut(s) 112, 231, 367, 495
BpiI GAAGAC 1 cut(s) 12
BpmI CTGGAG 3 cut(s) 77, 200, 347
Bpu14I TTCGAA 1 cut(s) 692
BsaHI GRCGYC 1 cut(s) 204
BsaI GGTCTC 1 cut(s) 344
BsaJI CCNNGG 1 cut(s) 303
BsaXI ACNNNNNCTCC 2 cut(s) 516, 546
Bsc4I CCNNNNNNNGG 4 cut(s) 194, 304, 654, 682
Bse118I RCCGGY 3 cut(s) 191, 460, 710
Bse1I ACTGG 4 cut(s) 60, 405, 469, 594
Bse21I CCTNAGG 1 cut(s) 681
Bse3DI GCAATG 1 cut(s) 522
BseBI CCWGG 1 cut(s) 374
BseDI CCNNGG 1 cut(s) 303
BseGI GGATG 3 cut(s) 222, 382, 601
BseLI CCNNNNNNNGG 4 cut(s) 194, 304, 654, 682
BseMI GCAATG 1 cut(s) 522
BseMII CTCAG 3 cut(s) 179, 614, 672
BseNI ACTGG 4 cut(s) 60, 405, 469, 594
BseYI CCCAGC 1 cut(s) 700
BshFI GGCC 5 cut(s) 65, 312, 397, 487, 698
BsiHKAI GWGCWC 1 cut(s) 264
BsiSI CCGG 5 cut(s) 138, 192, 461, 488, 711
BslFI GGGAC 2 cut(s) 65, 73
BslI CCNNNNNNNGG 4 cut(s) 194, 304, 654, 682
BsmAI GTCTC 2 cut(s) 344, 580
BsmFI GGGAC 2 cut(s) 65, 73
BsnI GGCC 5 cut(s) 65, 312, 397, 487, 698
Bso31I GGTCTC 1 cut(s) 344
Bsp119I TTCGAA 1 cut(s) 692
Bsp1286I GDGCHC 1 cut(s) 264
Bsp143I GATC 4 cut(s) 72, 168, 421, 630
BspACI CCGC 6 cut(s) 106, 159, 195, 229, 413, 611
BspANI GGCC 5 cut(s) 65, 312, 397, 487, 698
BspCNI CTCAG 3 cut(s) 178, 615, 673
BspLI GGNNCC 4 cut(s) 280, 423, 435, 699
BspPI GGATC 3 cut(s) 163, 416, 429
BspT104I TTCGAA 1 cut(s) 692
BspTNI GGTCTC 1 cut(s) 344
BsrDI GCAATG 1 cut(s) 522
BsrFI RCCGGY 3 cut(s) 191, 460, 710
BsrI ACTGG 4 cut(s) 60, 405, 469, 594
BssAI RCCGGY 3 cut(s) 191, 460, 710
BssECI CCNNGG 1 cut(s) 303
BssMI GATC 4 cut(s) 72, 168, 421, 630
BssNI GRCGYC 1 cut(s) 204
Bst2UI CCWGG 1 cut(s) 374
Bst4CI ACNGT 4 cut(s) 248, 430, 438, 560
Bst6I CTCTTC 1 cut(s) 476
BstACI GRCGYC 1 cut(s) 204
BstAPI GCANNNNNTGC 1 cut(s) 47
BstBI TTCGAA 1 cut(s) 692
BstC8I GCNNGC 6 cut(s) 31, 63, 193, 233, 458, 462
BstDEI CTNAG 3 cut(s) 165, 623, 681
BstENI CCTNNNNNAGG 2 cut(s) 302, 680
BstF5I GGATG 3 cut(s) 222, 382, 601
BstHHI GCGC 1 cut(s) 222
BstKTI GATC 4 cut(s) 75, 171, 424, 633
BstMAI GTCTC 2 cut(s) 344, 580
BstMBI GATC 4 cut(s) 72, 168, 421, 630
BstMWI GCNNNNNNNGC 3 cut(s) 47, 228, 403
BstNI CCWGG 1 cut(s) 374
BstNSI RCATGY 1 cut(s) 235
BstSCI CCNGG 1 cut(s) 372
BstSFI CTRYAG 1 cut(s) 346
BstV2I GAAGAC 1 cut(s) 12
BstX2I RGATCY 2 cut(s) 168, 421
BstYI RGATCY 2 cut(s) 168, 421
Bsu36I CCTNAGG 1 cut(s) 681
BsuRI GGCC 5 cut(s) 65, 312, 397, 487, 698
BtsCI GGATG 3 cut(s) 222, 382, 601
BtsI GCAGTG 1 cut(s) 613
BtsIMutI CAGTG 3 cut(s) 398, 426, 613
Cac8I GCNNGC 6 cut(s) 31, 63, 193, 233, 458, 462
CfoI GCGC 1 cut(s) 222
Cfr10I RCCGGY 3 cut(s) 191, 460, 710
Cfr13I GGNCC 1 cut(s) 697
CseI GACGC 2 cut(s) 67, 212
Csp6I GTAC 4 cut(s) 466, 472, 551, 653
CviAII CATG 3 cut(s) 70, 232, 407
CviQI GTAC 4 cut(s) 466, 472, 551, 653
DdeI CTNAG 3 cut(s) 165, 623, 681
DpnI GATC 4 cut(s) 74, 170, 423, 632
DpnII GATC 4 cut(s) 72, 168, 421, 630
EaeI YGGCCR 3 cut(s) 63, 310, 395
Eam1104I CTCTTC 1 cut(s) 476
EarI CTCTTC 1 cut(s) 476
EciI GGCGGA 2 cut(s) 95, 148
Eco31I GGTCTC 1 cut(s) 344
Eco81I CCTNAGG 1 cut(s) 681
EcoNI CCTNNNNNAGG 2 cut(s) 302, 680
EcoO109I RGGNCCY 1 cut(s) 697
EcoRII CCWGG 1 cut(s) 372
FaeI CATG 3 cut(s) 73, 235, 410
FaiI YATR 9 cut(s) 53, 71, 86, 233, 348, 357, 408, 635, 727
FaqI GGGAC 2 cut(s) 65, 73
FatI CATG 3 cut(s) 69, 231, 406
FauI CCCGC 1 cut(s) 604
FbaI TGATCA 2 cut(s) 72, 630
FokI GGATG 3 cut(s) 209, 389, 608
FspBI CTAG 2 cut(s) 320, 554
GlaI GCGC 1 cut(s) 221
GsaI CCCAGC 1 cut(s) 704
GsuI CTGGAG 3 cut(s) 77, 200, 347
HaeIII GGCC 5 cut(s) 65, 312, 397, 487, 698
HapII CCGG 5 cut(s) 138, 192, 461, 488, 711
HgaI GACGC 2 cut(s) 67, 212
HhaI GCGC 1 cut(s) 222
Hin1I GRCGYC 1 cut(s) 204
Hin1II CATG 3 cut(s) 73, 235, 410
Hin6I GCGC 1 cut(s) 220
HinP1I GCGC 1 cut(s) 220
HpaII CCGG 5 cut(s) 138, 192, 461, 488, 711
HphI GGTGA 6 cut(s) 212, 229, 292, 316, 592, 725
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 3 cut(s) 168, 259, 283
Hpy188III TCNNGA 3 cut(s) 332, 442, 522
Hpy8I GTNNAC 1 cut(s) 13
Hpy99I CGWCG 3 cut(s) 104, 119, 278
HpyAV CCTTC 5 cut(s) 194, 439, 505, 653, 688
HpyCH4III ACNGT 4 cut(s) 248, 430, 438, 560
HpyCH4IV ACGT 3 cut(s) 9, 114, 178
HpyCH4V TGCA 3 cut(s) 380, 406, 508
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 228, 403
HpyF3I CTNAG 3 cut(s) 165, 623, 681
HpySE526I ACGT 3 cut(s) 9, 114, 178
Hsp92I GRCGYC 1 cut(s) 204
Hsp92II CATG 3 cut(s) 73, 235, 410
HspAI GCGC 1 cut(s) 220
KroI GCCGGC 2 cut(s) 191, 460
KroNI GCCGGC 2 cut(s) 193, 462
Ksp22I TGATCA 2 cut(s) 72, 630
Kzo9I GATC 4 cut(s) 72, 168, 421, 630
LmnI GCTCC 2 cut(s) 58, 284
LweI GCATC 4 cut(s) 112, 231, 367, 495
MaeI CTAG 2 cut(s) 320, 554
MaeII ACGT 3 cut(s) 9, 114, 178
MaeIII GTNAC 4 cut(s) 200, 322, 560, 580
MalI GATC 4 cut(s) 74, 170, 423, 632
MboI GATC 4 cut(s) 72, 168, 421, 630
MboII GAAGA 2 cut(s) 17, 493
MflI RGATCY 2 cut(s) 168, 421
MhlI GDGCHC 1 cut(s) 264
MlsI TGGCCA 2 cut(s) 65, 397
MluNI TGGCCA 2 cut(s) 65, 397
Mox20I TGGCCA 2 cut(s) 65, 397
MroNI GCCGGC 2 cut(s) 191, 460
MscI TGGCCA 2 cut(s) 65, 397
MseI TTAA 1 cut(s) 666
MslI CAYNNNNRTG 1 cut(s) 375
Msp20I TGGCCA 2 cut(s) 65, 397
MspI CCGG 5 cut(s) 138, 192, 461, 488, 711
MspR9I CCNGG 1 cut(s) 374
MvaI CCWGG 1 cut(s) 374
MwoI GCNNNNNNNGC 3 cut(s) 47, 228, 403
NaeI GCCGGC 2 cut(s) 193, 462
NdeII GATC 4 cut(s) 72, 168, 421, 630
NgoMIV GCCGGC 2 cut(s) 191, 460
NlaIII CATG 3 cut(s) 73, 235, 410
NlaIV GGNNCC 4 cut(s) 280, 423, 435, 699
NmeAIII GCCGAG 1 cut(s) 232
NmuCI GTSAC 3 cut(s) 200, 322, 580
NspI RCATGY 1 cut(s) 235
NspV TTCGAA 1 cut(s) 692
PaeI GCATGC 1 cut(s) 235
PdiI GCCGGC 2 cut(s) 193, 462
Psp6I CCWGG 1 cut(s) 372
PspFI CCCAGC 1 cut(s) 700
PspGI CCWGG 1 cut(s) 372
PspN4I GGNNCC 4 cut(s) 280, 423, 435, 699
PspPI GGNCC 1 cut(s) 697
PsuI RGATCY 2 cut(s) 168, 421
RsaI GTAC 4 cut(s) 467, 473, 552, 654
RsaNI GTAC 4 cut(s) 466, 472, 551, 653
RseI CAYNNNNRTG 1 cut(s) 375
SaqAI TTAA 1 cut(s) 666
Sau3AI GATC 4 cut(s) 72, 168, 421, 630
Sau96I GGNCC 1 cut(s) 697
ScaI AGTACT 2 cut(s) 473, 552
ScrFI CCNGG 1 cut(s) 374
SduI GDGCHC 1 cut(s) 264
SfaNI GCATC 4 cut(s) 112, 231, 367, 495
SfcI CTRYAG 1 cut(s) 346
SfuI TTCGAA 1 cut(s) 692
SgrAI CRCCGGYG 1 cut(s) 710
SmiMI CAYNNNNRTG 1 cut(s) 375
SphI GCATGC 1 cut(s) 235
SsiI CCGC 6 cut(s) 106, 159, 195, 229, 413, 611
SspMI CTAG 2 cut(s) 320, 554
StyD4I CCNGG 1 cut(s) 372
TaaI ACNGT 4 cut(s) 248, 430, 438, 560
TaiI ACGT 3 cut(s) 12, 117, 181
TaqI TCGA 1 cut(s) 692
TatI WGTACW 2 cut(s) 471, 550
Tru1I TTAA 1 cut(s) 666
Tru9I TTAA 1 cut(s) 666
TscAI CASTG 3 cut(s) 405, 433, 613
TseFI GTSAC 3 cut(s) 200, 322, 580
Tsp45I GTSAC 3 cut(s) 200, 322, 580
TspDTI ATGAA 3 cut(s) 509, 529, 714
TspRI CASTG 3 cut(s) 405, 433, 613
XagI CCTNNNNNAGG 2 cut(s) 302, 680
XceI RCATGY 1 cut(s) 235
XcmI CCANNNNNNNNNTGG 1 cut(s) 58
XspI CTAG 2 cut(s) 320, 554
ZrmI AGTACT 2 cut(s) 473, 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.