Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0004896

Physical Location & Seq

Genomic Coordinates Forward (+)

23606632 .. 23608605

Gene Structure 1974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1143400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGTTTCCGAGAGGAGCTGATGCGTACATAGATGACATTAACGCGCTCATTCCTCTCACTAAGGGCGACATCAGAACTGCAATTGATACTGGCTGTGGTGTAGCCAGTTGGGGTGCGTACCTGTTGAAGAGGGACATCATGACAATGTCTTTTGCACCGAGAGATACGCATGCAGCGCAGGTTCAGTTTGCATTGGAGCGCGGAGTTCCCGCTATGATTGGTGTCATGGCTTCGAAGAGGCTTCCCTACCCTGCAAGGGCTTTCGATATGGCTCACTGTTCCCGCTGCTTGATCCCTTGGATGAACTATGGTAAAATGGTATGTATAATGTATCTAATTGAAGTGGACAGAGTTCTAAGGCCTGGTGGTTATTGGATTCTTTCCGGACCGCCTATTAACTGGAAAAGAAAATACTGGAGGGGATGGGAGAGAACTCAAGAGGATTTGAAACAAGAGCAAGATTCTATTGAGTCTGTTGCAAAGCGCCTGTGCTGGAAGAAGGTGATCGAGAAGAATGATCTTGCAATCTGGCAAAAACCTATCAATCACGTCAAATGCATTAAGAGCAGGACGGTGTATAAAACACCACATATATGCAAATCAGACAATCCAGATATGGCTTGGGAAAGAGACATGGAGAGTGGCATTACTCCTCTACCGGAGACAAGCGATCCTAATGACGTTGCTGGTGGGGCGTTGGAGAAGTGGCCTGAACGTGCATTTTCTGTCCCTCCTAGAATCAGCAGCGGTTCAATACCAGGAATCACAGCTGAGAAACTCCGCGAGGATAATCAACCGTGGCAATATCGGAATGTGATGGACATGAATGCTTACCTCGGTGGATTTGCTGAAGCATTGTCAAAATATCCAGTGAGGGTTATGAACACCGTCCCTGCCAACTCAAACCAGGACACTCTTGGTGTGATTTACGAACGTGGTTTTATTGGAACATACCAGGACTGGTGTGAGGCTTTCCCAACGTATCCTAGAACATACGATCTCATCCACGCTGGTGGAGTCTTCAGCATATATCAGGACAGATGGATAGGATTCTTAGGCCGGAAGGAACGGTATACAGTAGAGATCCTGGTGAAAATAAAGGCAATTACCGATGGAATGAGGTGGAAGAGCCAGATTATGGATCACGAGAGCGGATCTTTTAACCCAGAGAAAATTCTTCTTGCGGTGAAAACTTACGGGACTGGTGAAATAAAAAAAAAGGAAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

410

Amino Acids

46.65

Weight (kDa)

8.82

Isoelectric Point (pI)

36.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_29	PF03141	1 - 268	1.8e-99	Putative S-adenosyl-L-methionine-dependent methyltransferase
Methyltransf_29	PF03141	268 - 347	4.5e-36	Putative S-adenosyl-L-methionine-dependent methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33170 AT4G10440
fragaria_vesca	FvH4_5g10160 FvH4_5g10160 FvH4_5g10160 FvH4_5g10160 FvH4_5g10160 FvH4_5g10160
malus_domestica	MD06G1125900.v1.1 MD06G1127600.v1.1 MD14G1143200.v1.1 MD14G1143400.v1.1
prunus_persica	Prupe.5G137400_v2.0.a1 Prupe.5G137400_v2.0.a1 Prupe.5G137400_v2.0.a1
pyrus_communis	pycom06g11630 pycom06g11770 pycom14g11870 pycom14g11880
rosa_chinensis	RchiOBHm_Chr7g0188141
rosa_laevigata	RLG00000004725
rosa_roxburghii	Rroxscaffold_3G00266740
rosa_rugosa	Rorug06G0488400 Rorug06G0488400 Rorug06G0488500
rosa_samantha	Rh7AG092700 Rh7BG094300 Rh7CG094000 Rh7DG094700
rosa_wichuraiana	Rw7G008000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	169
AccB7I	CCANNNNNTGG	1 cut(s)	1138
AccBSI	CCGCTC	1 cut(s)	1152
AccI	GTMKAC	1 cut(s)	1073
AccII	CGCG	3 cut(s)	44, 201, 783
AccIII	TCCGGA	1 cut(s)	383
AciI	CCGC	8 cut(s)	201, 210, 283, 389, 747, 781, 1152, 1184
AclWI	GGATC	5 cut(s)	286, 665, 1078, 1149, 1162
AcsI	RAATTY	1 cut(s)	1173
AcuI	CTGAAG	2 cut(s)	870, 1006
AfaI	GTAC	2 cut(s)	26, 119
AfiI	CCNNNNNNNGG	2 cut(s)	256, 1138
AgsI	TTSAA	4 cut(s)	127, 341, 448, 753
AjiI	CACGTC	1 cut(s)	550
AjnI	CCWGG	5 cut(s)	361, 757, 906, 954, 1086
AleI	CACNNNNGTG	1 cut(s)	1011
AluBI	AGCT	3 cut(s)	17, 770, 1227
AluI	AGCT	3 cut(s)	17, 770, 1227
Alw26I	GTCTC	2 cut(s)	624, 656
AlwI	GGATC	5 cut(s)	286, 665, 1078, 1149, 1162
Aor13HI	TCCGGA	1 cut(s)	383
AoxI	GGCC	3 cut(s)	359, 707, 1057
ApeKI	GCWGC	3 cut(s)	173, 285, 744
ApoI	RAATTY	1 cut(s)	1173
AspLEI	GCGC	4 cut(s)	46, 178, 201, 486
AspS9I	GGNCC	1 cut(s)	386
AsuHPI	GGTGA	4 cut(s)	514, 1102, 1198, 1217
AsuII	TTCGAA	1 cut(s)	233
AvaII	GGWCC	1 cut(s)	386
BauI	CACGAG	1 cut(s)	1145
BbsI	GAAGAC	1 cut(s)	1012
BbvI	GCAGC	3 cut(s)	185, 272, 756
BccI	CCATC	4 cut(s)	417, 811, 1035, 1106
BciT130I	CCWGG	5 cut(s)	363, 759, 908, 956, 1088
BciVI	GTATCC	1 cut(s)	993
BcoDI	GTCTC	2 cut(s)	624, 656
BfaI	CTAG	3 cut(s)	735, 987, 1228
BfoI	RGCGCY	1 cut(s)	487
BfuAI	ACCTGC	1 cut(s)	169
BfuI	GTATCC	1 cut(s)	993
BisI	GCNGC	3 cut(s)	174, 286, 745
BlsI	GCNGC	3 cut(s)	175, 287, 746
Bme1390I	CCNGG	5 cut(s)	363, 759, 908, 956, 1088
Bme18I	GGWCC	1 cut(s)	386
BmgBI	CACGTC	1 cut(s)	550
BmgT120I	GGNCC	1 cut(s)	386
BmrFI	CCNGG	5 cut(s)	363, 759, 908, 956, 1088
BmsI	GCATC	1 cut(s)	10
BpiI	GAAGAC	1 cut(s)	1012
BpmI	CTGGAG	1 cut(s)	436
Bpu14I	TTCGAA	1 cut(s)	233
BpuEI	CTTGAG	1 cut(s)	420
BsaJI	CCNNGG	3 cut(s)	296, 797, 835
BsaWI	WCCGGW	2 cut(s)	383, 658
Bsc4I	CCNNNNNNNGG	2 cut(s)	256, 1138
Bse1I	ACTGG	7 cut(s)	94, 105, 404, 419, 869, 965, 1207
BseAI	TCCGGA	1 cut(s)	383
BseBI	CCWGG	5 cut(s)	363, 759, 908, 956, 1088
BseDI	CCNNGG	3 cut(s)	296, 797, 835
BseGI	GGATG	3 cut(s)	306, 428, 1002
BseLI	CCNNNNNNNGG	2 cut(s)	256, 1138
BseMII	CTCAG	1 cut(s)	762
BseNI	ACTGG	7 cut(s)	94, 105, 404, 419, 869, 965, 1207
BseRI	GAGGAG	2 cut(s)	27, 642
BseXI	GCAGC	3 cut(s)	185, 272, 756
Bsh1236I	CGCG	3 cut(s)	44, 201, 783
BshFI	GGCC	3 cut(s)	361, 709, 1059
BsiSI	CCGG	3 cut(s)	384, 659, 1060
BslFI	GGGAC	4 cut(s)	146, 713, 875, 1213
BslI	CCNNNNNNNGG	2 cut(s)	256, 1138
BsmAI	GTCTC	2 cut(s)	624, 656
BsmFI	GGGAC	4 cut(s)	146, 713, 875, 1213
BsmI	GAATGC	1 cut(s)	832
BsnI	GGCC	3 cut(s)	361, 709, 1059
Bsp119I	TTCGAA	1 cut(s)	233
Bsp13I	TCCGGA	1 cut(s)	383
Bsp143I	GATC	8 cut(s)	291, 504, 517, 670, 997, 1083, 1141, 1154
BspACI	CCGC	8 cut(s)	201, 210, 283, 389, 747, 781, 1152, 1184
BspANI	GGCC	3 cut(s)	361, 709, 1059
BspCNI	CTCAG	1 cut(s)	763
BspEI	TCCGGA	1 cut(s)	383
BspFNI	CGCG	3 cut(s)	44, 201, 783
BspHI	TCATGA	1 cut(s)	138
BspMI	ACCTGC	1 cut(s)	169
BspPI	GGATC	5 cut(s)	286, 665, 1078, 1149, 1162
BspQI	GCTCTTC	1 cut(s)	1121
BspT104I	TTCGAA	1 cut(s)	233
BsrBI	CCGCTC	1 cut(s)	1152
BsrI	ACTGG	7 cut(s)	94, 105, 404, 419, 869, 965, 1207
BssECI	CCNNGG	3 cut(s)	296, 797, 835
BssMI	GATC	8 cut(s)	291, 504, 517, 670, 997, 1083, 1141, 1154
BssNAI	GTATAC	1 cut(s)	1074
BssSI	CACGAG	1 cut(s)	1145
BssT1I	CCWWGG	1 cut(s)	296
Bst1107I	GTATAC	1 cut(s)	1074
Bst2BI	CACGAG	1 cut(s)	1145
Bst2UI	CCWGG	5 cut(s)	363, 759, 908, 956, 1088
Bst4CI	ACNGT	6 cut(s)	278, 574, 798, 889, 1071, 1078
Bst6I	CTCTTC	3 cut(s)	122, 230, 1121
BstBI	TTCGAA	1 cut(s)	233
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	4 cut(s)	60, 356, 771, 1054
BstDSI	CCRYGG	1 cut(s)	797
BstF5I	GGATG	3 cut(s)	306, 428, 1002
BstFNI	CGCG	3 cut(s)	44, 201, 783
BstH2I	RGCGCY	1 cut(s)	487
BstHHI	GCGC	4 cut(s)	46, 178, 201, 486
BstKTI	GATC	8 cut(s)	294, 507, 520, 673, 1000, 1086, 1144, 1157
BstMAI	GTCTC	2 cut(s)	624, 656
BstMBI	GATC	8 cut(s)	291, 504, 517, 670, 997, 1083, 1141, 1154
BstMWI	GCNNNNNNNGC	3 cut(s)	175, 564, 692
BstNI	CCWGG	5 cut(s)	363, 759, 908, 956, 1088
BstNSI	RCATGY	1 cut(s)	173
BstSCI	CCNGG	5 cut(s)	361, 757, 906, 954, 1086
BstUI	CGCG	3 cut(s)	44, 201, 783
BstV1I	GCAGC	3 cut(s)	185, 272, 756
BstV2I	GAAGAC	1 cut(s)	1012
BstX2I	RGATCY	2 cut(s)	1083, 1154
BstXI	CCANNNNNNTGG	1 cut(s)	1013
BstYI	RGATCY	2 cut(s)	1083, 1154
BstZ17I	GTATAC	1 cut(s)	1074
BsuI	GTATCC	1 cut(s)	993
BsuRI	GGCC	3 cut(s)	361, 709, 1059
BtgI	CCRYGG	1 cut(s)	797
BtrI	CACGTC	1 cut(s)	550
BtsCI	GGATG	3 cut(s)	306, 428, 1002
BtsIMutI	CAGTG	2 cut(s)	274, 876
BveI	ACCTGC	1 cut(s)	169
Cac8I	GCNNGC	1 cut(s)	171
CciI	TCATGA	1 cut(s)	138
CfoI	GCGC	4 cut(s)	46, 178, 201, 486
Cfr13I	GGNCC	1 cut(s)	386
CpoI	CGGWCCG	1 cut(s)	386
Csp6I	GTAC	2 cut(s)	25, 118
CspI	CGGWCCG	1 cut(s)	386
CviAII	CATG	5 cut(s)	139, 170, 226, 634, 823
CviQI	GTAC	2 cut(s)	25, 118
DdeI	CTNAG	4 cut(s)	60, 356, 771, 1054
DpnI	GATC	8 cut(s)	293, 506, 519, 672, 999, 1085, 1143, 1156
DpnII	GATC	8 cut(s)	291, 504, 517, 670, 997, 1083, 1141, 1154
Eam1104I	CTCTTC	3 cut(s)	122, 230, 1121
EarI	CTCTTC	3 cut(s)	122, 230, 1121
Eco130I	CCWWGG	1 cut(s)	296
Eco147I	AGGCCT	1 cut(s)	361
Eco47I	GGWCC	1 cut(s)	386
Eco57I	CTGAAG	2 cut(s)	870, 1006
EcoRII	CCWGG	5 cut(s)	361, 757, 906, 954, 1086
EcoT14I	CCWWGG	1 cut(s)	296
EcoT22I	ATGCAT	1 cut(s)	560
ErhI	CCWWGG	1 cut(s)	296
FaeI	CATG	5 cut(s)	142, 173, 229, 637, 826
FaqI	GGGAC	4 cut(s)	146, 713, 875, 1213
FatI	CATG	5 cut(s)	138, 169, 225, 633, 822
FauI	CCCGC	2 cut(s)	217, 290
FblI	GTMKAC	1 cut(s)	1073
Fnu4HI	GCNGC	3 cut(s)	174, 286, 745
FokI	GGATG	3 cut(s)	313, 435, 989
Fsp4HI	GCNGC	3 cut(s)	174, 286, 745
FspBI	CTAG	3 cut(s)	735, 987, 1228
GlaI	GCGC	4 cut(s)	45, 177, 200, 485
GluI	GCNGC	3 cut(s)	174, 286, 745
GsuI	CTGGAG	1 cut(s)	436
HaeII	RGCGCY	1 cut(s)	487
HaeIII	GGCC	3 cut(s)	361, 709, 1059
HapII	CCGG	3 cut(s)	384, 659, 1060
HhaI	GCGC	4 cut(s)	46, 178, 201, 486
Hin1II	CATG	5 cut(s)	142, 173, 229, 637, 826
Hin6I	GCGC	4 cut(s)	44, 176, 199, 484
HinP1I	GCGC	4 cut(s)	44, 176, 199, 484
HinfI	GANTC	7 cut(s)	376, 461, 470, 738, 762, 1017, 1050
HpaII	CCGG	3 cut(s)	384, 659, 1060
HphI	GGTGA	4 cut(s)	514, 1102, 1198, 1217
Hpy166II	GTNNAC	2 cut(s)	346, 1074
Hpy188I	TCNGA	4 cut(s)	9, 74, 604, 810
Hpy188III	TCNNGA	7 cut(s)	139, 384, 437, 508, 611, 1034, 1145
Hpy8I	GTNNAC	2 cut(s)	346, 1074
HpyAV	CCTTC	2 cut(s)	493, 1057
HpyCH4III	ACNGT	6 cut(s)	278, 574, 798, 889, 1071, 1078
HpyCH4IV	ACGT	5 cut(s)	549, 681, 715, 934, 980
HpyF10VI	GCNNNNNNNGC	3 cut(s)	175, 564, 692
HpyF3I	CTNAG	4 cut(s)	60, 356, 771, 1054
HpySE526I	ACGT	5 cut(s)	549, 681, 715, 934, 980
Hsp92II	CATG	5 cut(s)	142, 173, 229, 637, 826
HspAI	GCGC	4 cut(s)	44, 176, 199, 484
Kpn2I	TCCGGA	1 cut(s)	383
Kzo9I	GATC	8 cut(s)	291, 504, 517, 670, 997, 1083, 1141, 1154
LguI	GCTCTTC	1 cut(s)	1121
LmnI	GCTCC	2 cut(s)	14, 196
Lsp1109I	GCAGC	3 cut(s)	185, 272, 756
LweI	GCATC	1 cut(s)	10
MaeI	CTAG	3 cut(s)	735, 987, 1228
MaeII	ACGT	5 cut(s)	549, 681, 715, 934, 980
MalI	GATC	8 cut(s)	293, 506, 519, 672, 999, 1085, 1143, 1156
MbiI	CCGCTC	1 cut(s)	1152
MboI	GATC	8 cut(s)	291, 504, 517, 670, 997, 1083, 1141, 1154
MboII	GAAGA	7 cut(s)	139, 247, 508, 523, 1012, 1138, 1169
MfeI	CAATTG	1 cut(s)	81
MflI	RGATCY	2 cut(s)	1083, 1154
MluCI	AATT	4 cut(s)	81, 336, 1104, 1173
MlyI	GAGTC	2 cut(s)	479, 1026
MmeI	TCCRAC	1 cut(s)	678
Mph1103I	ATGCAT	1 cut(s)	560
MroI	TCCGGA	1 cut(s)	383
MseI	TTAA	4 cut(s)	39, 396, 561, 1161
MslI	CAYNNNNRTG	3 cut(s)	143, 592, 1011
MspA1I	CMGCKG	3 cut(s)	285, 747, 770
MspI	CCGG	3 cut(s)	384, 659, 1060
MspR9I	CCNGG	5 cut(s)	363, 759, 908, 956, 1088
MunI	CAATTG	1 cut(s)	81
Mva1269I	GAATGC	1 cut(s)	832
MvaI	CCWGG	5 cut(s)	363, 759, 908, 956, 1088
MvnI	CGCG	3 cut(s)	44, 201, 783
MwoI	GCNNNNNNNGC	3 cut(s)	175, 564, 692
NdeII	GATC	8 cut(s)	291, 504, 517, 670, 997, 1083, 1141, 1154
NlaIII	CATG	5 cut(s)	142, 173, 229, 637, 826
NsiI	ATGCAT	1 cut(s)	560
NspI	RCATGY	1 cut(s)	173
NspV	TTCGAA	1 cut(s)	233
OliI	CACNNNNGTG	1 cut(s)	1011
PaeI	GCATGC	1 cut(s)	173
PagI	TCATGA	1 cut(s)	138
PceI	AGGCCT	1 cut(s)	361
PciSI	GCTCTTC	1 cut(s)	1121
PctI	GAATGC	1 cut(s)	832
PfeI	GAWTC	5 cut(s)	376, 461, 738, 762, 1050
PflFI	GACNNNGTC	1 cut(s)	145
PflMI	CCANNNNNTGG	1 cut(s)	1138
PkrI	GCNGC	3 cut(s)	175, 287, 746
PleI	GAGTC	2 cut(s)	478, 1025
PpsI	GAGTC	2 cut(s)	478, 1025
Psp6I	CCWGG	5 cut(s)	361, 757, 906, 954, 1086
PspGI	CCWGG	5 cut(s)	361, 757, 906, 954, 1086
PspPI	GGNCC	1 cut(s)	386
PsuI	RGATCY	2 cut(s)	1083, 1154
PsyI	GACNNNGTC	1 cut(s)	145
PvuII	CAGCTG	1 cut(s)	770
RsaI	GTAC	2 cut(s)	26, 119
RsaNI	GTAC	2 cut(s)	25, 118
RseI	CAYNNNNRTG	3 cut(s)	143, 592, 1011
Rsr2I	CGGWCCG	1 cut(s)	386
RsrII	CGGWCCG	1 cut(s)	386
SapI	GCTCTTC	1 cut(s)	1121
SaqAI	TTAA	4 cut(s)	39, 396, 561, 1161
SatI	GCNGC	3 cut(s)	174, 286, 745
Sau3AI	GATC	8 cut(s)	291, 504, 517, 670, 997, 1083, 1141, 1154
Sau96I	GGNCC	1 cut(s)	386
SchI	GAGTC	2 cut(s)	479, 1026
ScrFI	CCNGG	5 cut(s)	363, 759, 908, 956, 1088
SfaNI	GCATC	1 cut(s)	10
SfuI	TTCGAA	1 cut(s)	233
SinI	GGWCC	1 cut(s)	386
SmiMI	CAYNNNNRTG	3 cut(s)	143, 592, 1011
SmlI	CTYRAG	1 cut(s)	435
SmoI	CTYRAG	1 cut(s)	435
SphI	GCATGC	1 cut(s)	173
Sse9I	AATT	4 cut(s)	81, 336, 1104, 1173
SseBI	AGGCCT	1 cut(s)	361
SsiI	CCGC	8 cut(s)	201, 210, 283, 389, 747, 781, 1152, 1184
SspMI	CTAG	3 cut(s)	735, 987, 1228
StuI	AGGCCT	1 cut(s)	361
StyD4I	CCNGG	5 cut(s)	361, 757, 906, 954, 1086
StyI	CCWWGG	1 cut(s)	296
TaaI	ACNGT	6 cut(s)	278, 574, 798, 889, 1071, 1078
TaiI	ACGT	5 cut(s)	552, 684, 718, 937, 983
TaqI	TCGA	3 cut(s)	233, 264, 507
TasI	AATT	4 cut(s)	81, 336, 1104, 1173
TfiI	GAWTC	5 cut(s)	376, 461, 738, 762, 1050
Tru1I	TTAA	4 cut(s)	39, 396, 561, 1161
Tru9I	TTAA	4 cut(s)	39, 396, 561, 1161
TscAI	CASTG	2 cut(s)	281, 876
TseI	GCWGC	3 cut(s)	173, 285, 744
TspDTI	ATGAA	3 cut(s)	317, 839, 896
TspRI	CASTG	2 cut(s)	281, 876
Tth111I	GACNNNGTC	1 cut(s)	145
Van91I	CCANNNNNTGG	1 cut(s)	1138
VpaK11BI	GGWCC	1 cut(s)	386
XapI	RAATTY	1 cut(s)	1173
XceI	RCATGY	1 cut(s)	173
XcmI	CCANNNNNNNNNTGG	2 cut(s)	618, 914
XmiI	GTMKAC	1 cut(s)	1073
XspI	CTAG	3 cut(s)	735, 987, 1228
Zsp2I	ATGCAT	1 cut(s)	560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.