Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004896

Physical Location & Seq

Genomic Coordinates Forward (+)

60682404 .. 60684082

Gene Structure 1679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0488500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGCTTCCACTACAACAAAACCAGTTAAACAACTTGGAGAGCTTCTCCAAGAGCAGCAAGAACCCTTTGTCCTAGATGTTTACCTATTTGAAAGAGGGTGTCTGAGAAAGAGCTTGAGTTCAAGCAATAGCATTAATTCAAGCAAGAGTTTAAAGAGGTCATCTAGTTGTGGACCAATCAAGAGCAAAAAGGGTACTCCTAGCTTCTCCAAGATACTGAGATCTGTCTATAACAAGCTTGTTTCCAAAAATGGTGGCTCGAGAACTAAGAGTTCCGGAAAAGAAGAGGGAAAGTTTGATGCCAACACTGAGATTACTCTTCCTAGTGATTGCCTTGGAGATTTGGATGGATTTTCTTCTTCAAGTAGCAGAACACAGTATGAATCATGCTGTGATAGTGACAAAGATGAAGCTTGCGCCACTGTTTTGTTGCAGAATGAAGATGAAGCCTCGCTTGCAGTAGAAGGCACTTCTCAAGTTCCAAATCTCTGCAATATGAAAGAAGAGACAAAGATAGCACTGCTCAATGGGGAATCATCAGAGAAGAAGAAGACGCAATCTAAGCAACACACCTCAATTTCAGTACTAGAAGATAGACCTTCTCATGCAGTACCCAACAAGGTCATGGAAAACTCCATGTTATCAGCTTCTCTTTGGGAACTACTTTTCCAGCCACCATTGGAGAGGCCAAGAGATACTTTTGGAGTTCCAGAAATGCTAGAGCCGGTAATCAGATCGAATTCTTCTCCACACAAATCGAAAAGGATGTTGCAGCAGACAAGGCAGCTTCTTTTCGATTGTGTGAGAGAGGTGACAGAATCCCATGCAAAGCAAATGAAAGAGGAGCAGAACAGCACAAAGTTTTTGGGGGCGGAAGAACTGGGAAAGCTGATTTCTGAGAAATTAAGGATTTGGGATAGACAGGCTGGGGATGAAACCAACATCCACTTTTTGTTGGATTCAGATATCCTGAGTTCAGCTGAAGAATGGAATTGTAATGAACAACAAGAGAGAGAGATTTGCTGCGAAATTGGGGACGCCATTTTAGAAGAGATCATCAAAGAAACTGTTGCTCTACTTCTGATCTCGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMPIT

Protein Analysis

364

Amino Acids

40.56

Weight (kDa)

5.29

Isoelectric Point (pI)

62.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33170 AT4G10440
fragaria_vesca	FvH4_5g10160 FvH4_5g10160 FvH4_5g10160 FvH4_5g10160 FvH4_5g10160 FvH4_5g10160
malus_domestica	MD06G1125900.v1.1 MD06G1127600.v1.1 MD14G1143200.v1.1 MD14G1143400.v1.1
prunus_persica	Prupe.5G137400_v2.0.a1 Prupe.5G137400_v2.0.a1 Prupe.5G137400_v2.0.a1
pyrus_communis	pycom06g11630 pycom06g11770 pycom14g11870 pycom14g11880
rosa_chinensis	RchiOBHm_Chr7g0188141
rosa_laevigata	RLG00000004725
rosa_roxburghii	Rroxscaffold_3G00266740
rosa_rugosa	Rorug06G0488400 Rorug06G0488400 Rorug06G0488500
rosa_samantha	Rh7AG092700 Rh7BG094300 Rh7CG094000 Rh7DG094700
rosa_wichuraiana	Rw7G008000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	275
AciI	CCGC	1 cut(s)	872
AcsI	RAATTY	1 cut(s)	739
AcuI	CTGAAG	1 cut(s)	1002
AcyI	GRCGYC	1 cut(s)	1038
AfaI	GTAC	3 cut(s)	196, 585, 612
AgsI	TTSAA	4 cut(s)	92, 123, 141, 363
AloI	GAACNNNNNNTCC	4 cut(s)	54, 86, 651, 683
AluBI	AGCT	9 cut(s)	43, 114, 204, 238, 413, 647, 787, 889, 980
AluI	AGCT	9 cut(s)	43, 114, 204, 238, 413, 647, 787, 889, 980
Alw26I	GTCTC	1 cut(s)	500
Ama87I	CYCGRG	1 cut(s)	259
Aor13HI	TCCGGA	1 cut(s)	275
AoxI	GGCC	1 cut(s)	686
ApeKI	GCWGC	4 cut(s)	55, 772, 784, 1023
ApoI	RAATTY	1 cut(s)	739
AseI	ATTAAT	1 cut(s)	135
AspLEI	GCGC	1 cut(s)	419
AspS9I	GGNCC	1 cut(s)	173
AsuHPI	GGTGA	1 cut(s)	823
AvaI	CYCGRG	1 cut(s)	259
AvaII	GGWCC	1 cut(s)	173
BbsI	GAAGAC	1 cut(s)	557
BbvI	GCAGC	4 cut(s)	67, 784, 796, 1010
BccI	CCATC	1 cut(s)	341
BcoDI	GTCTC	1 cut(s)	500
BfaI	CTAG	6 cut(s)	74, 165, 201, 324, 587, 719
BglII	AGATCT	1 cut(s)	221
BisI	GCNGC	4 cut(s)	56, 773, 785, 1024
BlsI	GCNGC	4 cut(s)	57, 774, 786, 1025
BmcAI	AGTACT	1 cut(s)	585
Bme18I	GGWCC	1 cut(s)	173
BmeT110I	CYCGRG	1 cut(s)	259
BmgT120I	GGNCC	1 cut(s)	173
BmrI	ACTGGG	1 cut(s)	890
BmsI	GCATC	1 cut(s)	289
BmuI	ACTGGG	1 cut(s)	890
BpiI	GAAGAC	1 cut(s)	557
BplI	GAGNNNNNCTC	2 cut(s)	30, 62
BpuEI	CTTGAG	2 cut(s)	136, 459
BsaHI	GRCGYC	1 cut(s)	1038
BsaJI	CCNNGG	1 cut(s)	334
BsaWI	WCCGGW	1 cut(s)	275
Bse118I	RCCGGY	1 cut(s)	724
Bse1I	ACTGG	2 cut(s)	23, 885
BseAI	TCCGGA	1 cut(s)	275
BseDI	CCNNGG	1 cut(s)	334
BseGI	GGATG	4 cut(s)	352, 771, 937, 942
BseMII	CTCAG	5 cut(s)	95, 209, 300, 888, 962
BseNI	ACTGG	2 cut(s)	23, 885
BseRI	GAGGAG	1 cut(s)	857
BseXI	GCAGC	4 cut(s)	67, 784, 796, 1010
BseYI	CCCAGC	1 cut(s)	926
BshFI	GGCC	1 cut(s)	688
BsiHKCI	CYCGRG	1 cut(s)	259
BsiSI	CCGG	2 cut(s)	276, 725
BslFI	GGGAC	1 cut(s)	1049
BsmAI	GTCTC	1 cut(s)	500
BsmFI	GGGAC	1 cut(s)	1049
BsnI	GGCC	1 cut(s)	688
BsoBI	CYCGRG	1 cut(s)	259
Bsp13I	TCCGGA	1 cut(s)	275
Bsp143I	GATC	4 cut(s)	221, 734, 1053, 1083
BspACI	CCGC	1 cut(s)	872
BspANI	GGCC	1 cut(s)	688
BspCNI	CTCAG	5 cut(s)	96, 210, 301, 889, 963
BspEI	TCCGGA	1 cut(s)	275
BsrFI	RCCGGY	1 cut(s)	724
BsrI	ACTGG	2 cut(s)	23, 885
BssAI	RCCGGY	1 cut(s)	724
BssECI	CCNNGG	1 cut(s)	334
BssMI	GATC	4 cut(s)	221, 734, 1053, 1083
BssNI	GRCGYC	1 cut(s)	1038
BssT1I	CCWWGG	1 cut(s)	334
Bst4CI	ACNGT	3 cut(s)	378, 424, 1069
Bst6I	CTCTTC	4 cut(s)	279, 324, 498, 1044
BstACI	GRCGYC	1 cut(s)	1038
BstC8I	GCNNGC	2 cut(s)	415, 456
BstDEI	CTNAG	7 cut(s)	104, 218, 267, 309, 561, 897, 971
BstF5I	GGATG	4 cut(s)	352, 771, 937, 942
BstHHI	GCGC	1 cut(s)	419
BstKTI	GATC	4 cut(s)	224, 737, 1056, 1086
BstMAI	GTCTC	1 cut(s)	500
BstMBI	GATC	4 cut(s)	221, 734, 1053, 1083
BstMWI	GCNNNNNNNGC	3 cut(s)	455, 562, 781
BstV1I	GCAGC	4 cut(s)	67, 784, 796, 1010
BstV2I	GAAGAC	1 cut(s)	557
BstX2I	RGATCY	1 cut(s)	221
BstYI	RGATCY	1 cut(s)	221
BsuRI	GGCC	1 cut(s)	688
BtsCI	GGATG	4 cut(s)	352, 771, 937, 942
BtsI	GCAGTG	1 cut(s)	518
BtsIMutI	CAGTG	3 cut(s)	306, 420, 518
Cac8I	GCNNGC	2 cut(s)	415, 456
CfoI	GCGC	1 cut(s)	419
Cfr10I	RCCGGY	1 cut(s)	724
Cfr13I	GGNCC	1 cut(s)	173
CseI	GACGC	2 cut(s)	562, 1046
Csp6I	GTAC	3 cut(s)	195, 584, 611
CspCI	CAANNNNNGTGG	2 cut(s)	235, 270
CviAII	CATG	5 cut(s)	387, 605, 625, 637, 824
CviQI	GTAC	3 cut(s)	195, 584, 611
DdeI	CTNAG	7 cut(s)	104, 218, 267, 309, 561, 897, 971
DpnI	GATC	4 cut(s)	223, 736, 1055, 1085
DpnII	GATC	4 cut(s)	221, 734, 1053, 1083
DraI	TTTAAA	1 cut(s)	153
Eam1104I	CTCTTC	4 cut(s)	279, 324, 498, 1044
EarI	CTCTTC	4 cut(s)	279, 324, 498, 1044
EciI	GGCGGA	1 cut(s)	887
Eco130I	CCWWGG	1 cut(s)	334
Eco32I	GATATC	1 cut(s)	967
Eco47I	GGWCC	1 cut(s)	173
Eco57I	CTGAAG	1 cut(s)	1002
Eco88I	CYCGRG	1 cut(s)	259
EcoRI	GAATTC	1 cut(s)	739
EcoRV	GATATC	1 cut(s)	967
EcoT14I	CCWWGG	1 cut(s)	334
ErhI	CCWWGG	1 cut(s)	334
FaeI	CATG	5 cut(s)	390, 608, 628, 640, 827
FaiI	YATR	8 cut(s)	231, 381, 388, 497, 606, 626, 638, 825
FalI	AAGNNNNNCTT	4 cut(s)	438, 470, 682, 714
FaqI	GGGAC	1 cut(s)	1049
FatI	CATG	5 cut(s)	386, 604, 624, 636, 823
Fnu4HI	GCNGC	4 cut(s)	56, 773, 785, 1024
FokI	GGATG	4 cut(s)	359, 778, 929, 944
Fsp4HI	GCNGC	4 cut(s)	56, 773, 785, 1024
FspBI	CTAG	6 cut(s)	74, 165, 201, 324, 587, 719
GlaI	GCGC	1 cut(s)	418
GluI	GCNGC	4 cut(s)	56, 773, 785, 1024
GsaI	CCCAGC	1 cut(s)	930
HaeIII	GGCC	1 cut(s)	688
HapII	CCGG	2 cut(s)	276, 725
HgaI	GACGC	2 cut(s)	562, 1046
HhaI	GCGC	1 cut(s)	419
Hin1I	GRCGYC	1 cut(s)	1038
Hin1II	CATG	5 cut(s)	390, 608, 628, 640, 827
Hin6I	GCGC	1 cut(s)	417
HinP1I	GCGC	1 cut(s)	417
HindIII	AAGCTT	2 cut(s)	236, 411
HinfI	GANTC	4 cut(s)	383, 533, 818, 959
HpaII	CCGG	2 cut(s)	276, 725
HphI	GGTGA	1 cut(s)	823
Hpy166II	GTNNAC	2 cut(s)	82, 173
Hpy188I	TCNGA	6 cut(s)	105, 541, 734, 898, 964, 1083
Hpy188III	TCNNGA	5 cut(s)	181, 261, 276, 710, 970
Hpy8I	GTNNAC	2 cut(s)	82, 173
HpyAV	CCTTC	2 cut(s)	458, 609
HpyCH4III	ACNGT	3 cut(s)	378, 424, 1069
HpyCH4V	TGCA	6 cut(s)	433, 458, 492, 608, 772, 827
HpyF10VI	GCNNNNNNNGC	3 cut(s)	455, 562, 781
HpyF3I	CTNAG	7 cut(s)	104, 218, 267, 309, 561, 897, 971
Hsp92I	GRCGYC	1 cut(s)	1038
Hsp92II	CATG	5 cut(s)	390, 608, 628, 640, 827
HspAI	GCGC	1 cut(s)	417
Kpn2I	TCCGGA	1 cut(s)	275
Kzo9I	GATC	4 cut(s)	221, 734, 1053, 1083
LmnI	GCTCC	1 cut(s)	844
LpnPI	CCDG	9 cut(s)	36, 289, 683, 723, 738, 866, 908, 912, 983
Lsp1109I	GCAGC	4 cut(s)	67, 784, 796, 1010
LweI	GCATC	1 cut(s)	289
MaeI	CTAG	6 cut(s)	74, 165, 201, 324, 587, 719
MaeIII	GTNAC	2 cut(s)	398, 811
MalI	GATC	4 cut(s)	223, 736, 1055, 1085
MboI	GATC	4 cut(s)	221, 734, 1053, 1083
MflI	RGATCY	1 cut(s)	221
MluCI	AATT	6 cut(s)	136, 576, 739, 902, 991, 1029
MmeI	TCCRAC	1 cut(s)	936
MnlI	CCTC	8 cut(s)	89, 150, 280, 460, 583, 678, 802, 835
MroI	TCCGGA	1 cut(s)	275
MseI	TTAA	5 cut(s)	27, 135, 152, 905, 1093
MspA1I	CMGCKG	1 cut(s)	980
MspI	CCGG	2 cut(s)	276, 725
MwoI	GCNNNNNNNGC	3 cut(s)	455, 562, 781
NdeII	GATC	4 cut(s)	221, 734, 1053, 1083
NlaIII	CATG	5 cut(s)	390, 608, 628, 640, 827
NmuCI	GTSAC	2 cut(s)	398, 811
PaeR7I	CTCGAG	1 cut(s)	259
PfeI	GAWTC	4 cut(s)	383, 533, 818, 959
PkrI	GCNGC	4 cut(s)	57, 774, 786, 1025
PshBI	ATTAAT	1 cut(s)	135
PspFI	CCCAGC	1 cut(s)	926
PspPI	GGNCC	1 cut(s)	173
PsuI	RGATCY	1 cut(s)	221
PvuII	CAGCTG	1 cut(s)	980
RsaI	GTAC	3 cut(s)	196, 585, 612
RsaNI	GTAC	3 cut(s)	195, 584, 611
SaqAI	TTAA	5 cut(s)	27, 135, 152, 905, 1093
SatI	GCNGC	4 cut(s)	56, 773, 785, 1024
Sau3AI	GATC	4 cut(s)	221, 734, 1053, 1083
Sau96I	GGNCC	1 cut(s)	173
ScaI	AGTACT	1 cut(s)	585
SfaNI	GCATC	1 cut(s)	289
Sfr274I	CTCGAG	1 cut(s)	259
SinI	GGWCC	1 cut(s)	173
SlaI	CTCGAG	1 cut(s)	259
SmlI	CTYRAG	3 cut(s)	115, 259, 474
SmoI	CTYRAG	3 cut(s)	115, 259, 474
Sse9I	AATT	6 cut(s)	136, 576, 739, 902, 991, 1029
SsiI	CCGC	1 cut(s)	872
SspMI	CTAG	6 cut(s)	74, 165, 201, 324, 587, 719
StyI	CCWWGG	1 cut(s)	334
TaaI	ACNGT	3 cut(s)	378, 424, 1069
TaqI	TCGA	4 cut(s)	260, 737, 758, 795
TasI	AATT	6 cut(s)	136, 576, 739, 902, 991, 1029
TatI	WGTACW	1 cut(s)	583
TfiI	GAWTC	4 cut(s)	383, 533, 818, 959
Tru1I	TTAA	5 cut(s)	27, 135, 152, 905, 1093
Tru9I	TTAA	5 cut(s)	27, 135, 152, 905, 1093
TscAI	CASTG	3 cut(s)	313, 427, 525
TseFI	GTSAC	2 cut(s)	398, 811
TseI	GCWGC	4 cut(s)	55, 772, 784, 1023
Tsp45I	GTSAC	2 cut(s)	398, 811
TspDTI	ATGAA	8 cut(s)	396, 423, 453, 459, 512, 851, 948, 1014
TspRI	CASTG	3 cut(s)	313, 427, 525
VpaK11BI	GGWCC	1 cut(s)	173
VspI	ATTAAT	1 cut(s)	135
XapI	RAATTY	1 cut(s)	739
XcmI	CCANNNNNNNNNTGG	1 cut(s)	622
XhoI	CTCGAG	1 cut(s)	259
XspI	CTAG	6 cut(s)	74, 165, 201, 324, 587, 719
ZrmI	AGTACT	1 cut(s)	585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.