Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0009561

Physical Location & Seq

Genomic Coordinates Forward (+)

26963407 .. 26967202

Gene Structure 3796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1176700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGCGATTAAATGTGGTTCTTCGTTTTCTTGCCTGGCAACTTATCCTGCTTCCCATTGCCAAACCACAAGGGGTTCCCAGTTGAGCTTATTGCGTGTACCGTACTGCAGCCAACAACGTAATGGTCAACAGCTGAGATATGCTAAAGGTAATTCATGCATATTGAGACATCGAGTAGGGCAGTCAAGCAAAAGGATCCCAAACAGTCACAGTGTTCTTTTTGCTGTTGCTGAAGATCAGTCACAATATAGTGAGATAAAAACAGATGCTATGGAGCAAGAAACTCACCTTCCTAATTCTGAAGATATATTTCCTTCTAACAGTTCATATATCCATTTTGATGGTACTGGTGGAAAACCGGGTTTAATCTCATTTTATAACCGTCCGTATAAAGGGGAAGAAGAAGTTTCTACAAATAATCCAGAAAGGAACCAAAACAGCCTCTTATGGTTCATTGGTCCAGCTGTTCTCCTAGCTTCTTTCATTTTCCCCTCACTCTATCTGCGCAAAATACTATCTACTATATTTGAGGATTCTTTGTTGACAGATTTTCTCATCTTGTTCTTCACGGAAGCTCTCTTCTACAGTGGTGTTGCAGTGTTTCTTCTTCTGATTGACTGTTCAAGGAGGACAGCTGAACCAGAATTGGTTGTCCCCAGTAACAGAACCCCAGCCTCTCAGTTAGGACAGCGAATCTCATCTGTTGCTTCCTTGGTACTCAGTCTTATAATTCCTATGGTGACTATGGGTTATGTCTGGCCATGGACTGGCCCTGCAGCTTCTGCTACTCTTGCTCCATATCTGGTTGGTATAGTGGTCCAATTTGCATTTGAGCAGTACGCAAGATATAAGAAGTCACCTTCATGGCCTGTTATCCCTGTCATCTTTCAAGTCTATAGATTGCATCAACTGAATAGAGCAGCGCAACTGGTGACTGCTCTGTCCTTTACAGTCAGAGGCGCTGAGACGACACCGCACAACTTGGCAATAAACAGTTCCTTGGGCACACTGTTGAATGTCCTTCAATGCCTAGGAGTTATCTGCATTTGGTCTCTCTCAAGTTTCCTTATGAGGTTTTTCTCTTCCACCACTGCTAATCCACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

369

Amino Acids

40.84

Weight (kDa)

8.87

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009561)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63040 AT5G63040
fragaria_vesca	FvH4_5g05620 FvH4_5g05620 FvH4_5g05620 FvH4_5g05620 FvH4_5g05620
malus_domestica	MD06G1171000.v1.1 MD14G1176700.v1.1
prunus_persica	Prupe.5G170600_v2.0.a1
pyrus_communis	pycom06g15250 pycom14g14760
rosa_chinensis	RchiOBHm_Chr7g0193191
rosa_laevigata	RLG00000004288
rosa_multiflora	Rmu_ssc0000092.1_g000028
rosa_roxburghii	Rroxscaffold_3G00262300
rosa_rugosa	Rorug07G0008200
rosa_samantha	Rh7AG133600 Rh7BG134600 Rh7CG137500 Rh7DG135600
rosa_wichuraiana	Rw7G011420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	378, 728
AasI	GACNNNNNNGTC	1 cut(s)	940
Acc16I	TGCGCA	1 cut(s)	506
AccB7I	CCANNNNNTGG	1 cut(s)	767
AciI	CCGC	1 cut(s)	974
AclWI	GGATC	2 cut(s)	190, 203
AcoI	YGGCCR	1 cut(s)	758
AcuI	CTGAAG	2 cut(s)	252, 321
AfaI	GTAC	5 cut(s)	99, 104, 346, 717, 839
AfiI	CCNNNNNNNGG	2 cut(s)	392, 767
AgsI	TTSAA	4 cut(s)	624, 890, 1015, 1025
AjnI	CCWGG	1 cut(s)	33
AluBI	AGCT	7 cut(s)	87, 133, 464, 476, 575, 635, 779
AluI	AGCT	7 cut(s)	87, 133, 464, 476, 575, 635, 779
Alw26I	GTCTC	3 cut(s)	160, 959, 1056
AlwI	GGATC	2 cut(s)	190, 203
AlwNI	CAGNNNCTG	1 cut(s)	782
AoxI	GGCC	3 cut(s)	758, 769, 866
ApeKI	GCWGC	3 cut(s)	108, 776, 920
AspA2I	CCTAGG	1 cut(s)	1030
AspLEI	GCGC	3 cut(s)	507, 925, 962
AspS9I	GGNCC	3 cut(s)	458, 770, 817
AsuC2I	CCSGG	1 cut(s)	360
AsuHPI	GGTGA	4 cut(s)	278, 751, 849, 943
AvaII	GGWCC	2 cut(s)	458, 817
AvrII	CCTAGG	1 cut(s)	1030
BaeGI	GKGCMC	1 cut(s)	1007
BalI	TGGCCA	1 cut(s)	760
BamHI	GGATCC	1 cut(s)	195
BbvI	GCAGC	3 cut(s)	120, 788, 932
BccI	CCATC	1 cut(s)	335
BciT130I	CCWGG	1 cut(s)	35
BcnI	CCSGG	1 cut(s)	360
BcoDI	GTCTC	3 cut(s)	160, 959, 1056
BfaI	CTAG	2 cut(s)	473, 1031
BfmI	CTRYAG	4 cut(s)	106, 583, 774, 895
BfoI	RGCGCY	1 cut(s)	963
BisI	GCNGC	3 cut(s)	109, 777, 921
BlnI	CCTAGG	1 cut(s)	1030
BlsI	GCNGC	3 cut(s)	110, 778, 922
Bme1390I	CCNGG	2 cut(s)	35, 360
Bme18I	GGWCC	2 cut(s)	458, 817
BmgT120I	GGNCC	3 cut(s)	458, 770, 817
BmiI	GGNNCC	3 cut(s)	76, 197, 431
BmrFI	CCNGG	2 cut(s)	35, 360
BmrI	ACTGGG	2 cut(s)	73, 651
BmsI	GCATC	2 cut(s)	256, 913
BmuI	ACTGGG	2 cut(s)	73, 651
BpuEI	CTTGAG	1 cut(s)	1042
BpuMI	CCSGG	1 cut(s)	360
BsaI	GGTCTC	1 cut(s)	1056
BsaJI	CCNNGG	4 cut(s)	711, 761, 999, 1030
BsaXI	ACNNNNNCTCC	2 cut(s)	778, 808
Bsc4I	CCNNNNNNNGG	2 cut(s)	392, 767
Bse1I	ACTGG	5 cut(s)	79, 352, 657, 772, 933
Bse3DI	GCAATG	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	35
BseDI	CCNNGG	4 cut(s)	711, 761, 999, 1030
BseLI	CCNNNNNNNGG	2 cut(s)	392, 767
BseMI	GCAATG	1 cut(s)	55
BseMII	CTCAG	4 cut(s)	125, 692, 733, 954
BseNI	ACTGG	5 cut(s)	79, 352, 657, 772, 933
BseSI	GKGCMC	1 cut(s)	1007
BseXI	GCAGC	3 cut(s)	120, 788, 932
BseYI	CCCAGC	1 cut(s)	670
BshFI	GGCC	3 cut(s)	760, 771, 868
BsiSI	CCGG	1 cut(s)	359
BslFI	GGGAC	1 cut(s)	638
BslI	CCNNNNNNNGG	2 cut(s)	392, 767
BsmAI	GTCTC	3 cut(s)	160, 959, 1056
BsmBI	CGTCTC	1 cut(s)	959
BsmFI	GGGAC	1 cut(s)	638
BsnI	GGCC	3 cut(s)	760, 771, 868
Bso31I	GGTCTC	1 cut(s)	1056
Bsp1286I	GDGCHC	1 cut(s)	1007
Bsp143I	GATC	2 cut(s)	195, 235
Bsp19I	CCATGG	1 cut(s)	761
BspACI	CCGC	1 cut(s)	974
BspANI	GGCC	3 cut(s)	760, 771, 868
BspCNI	CTCAG	4 cut(s)	126, 691, 732, 955
BspLI	GGNNCC	3 cut(s)	76, 197, 431
BspMAI	CTGCAG	2 cut(s)	110, 778
BspPI	GGATC	2 cut(s)	190, 203
BspTNI	GGTCTC	1 cut(s)	1056
BsrDI	GCAATG	1 cut(s)	55
BsrI	ACTGG	5 cut(s)	79, 352, 657, 772, 933
BssECI	CCNNGG	4 cut(s)	711, 761, 999, 1030
BssMI	GATC	2 cut(s)	195, 235
BssT1I	CCWWGG	4 cut(s)	711, 761, 999, 1030
Bst2UI	CCWGG	1 cut(s)	35
Bst6I	CTCTTC	2 cut(s)	584, 1087
BstAPI	GCANNNNNTGC	1 cut(s)	782
BstDEI	CTNAG	4 cut(s)	134, 678, 719, 963
BstDSI	CCRYGG	1 cut(s)	761
BstH2I	RGCGCY	1 cut(s)	963
BstHHI	GCGC	3 cut(s)	507, 925, 962
BstKTI	GATC	2 cut(s)	198, 238
BstMAI	GTCTC	3 cut(s)	160, 959, 1056
BstMBI	GATC	2 cut(s)	195, 235
BstMWI	GCNNNNNNNGC	2 cut(s)	782, 791
BstNI	CCWGG	1 cut(s)	35
BstSCI	CCNGG	2 cut(s)	33, 358
BstSFI	CTRYAG	4 cut(s)	106, 583, 774, 895
BstSLI	GKGCMC	1 cut(s)	1007
BstV1I	GCAGC	3 cut(s)	120, 788, 932
BstX2I	RGATCY	1 cut(s)	195
BstXI	CCANNNNNNTGG	1 cut(s)	341
BstYI	RGATCY	1 cut(s)	195
BsuRI	GGCC	3 cut(s)	760, 771, 868
BtgI	CCRYGG	1 cut(s)	761
BtsI	GCAGTG	2 cut(s)	603, 1089
BtsIMutI	CAGTG	5 cut(s)	217, 592, 603, 1007, 1089
CaiI	CAGNNNCTG	1 cut(s)	782
CfoI	GCGC	3 cut(s)	507, 925, 962
Cfr13I	GGNCC	3 cut(s)	458, 770, 817
Csp6I	GTAC	5 cut(s)	98, 103, 345, 716, 838
CviAII	CATG	3 cut(s)	156, 762, 864
CviQI	GTAC	5 cut(s)	98, 103, 345, 716, 838
DdeI	CTNAG	4 cut(s)	134, 678, 719, 963
DpnI	GATC	2 cut(s)	197, 237
DpnII	GATC	2 cut(s)	195, 235
DrdI	GACNNNNNNGTC	1 cut(s)	940
DseDI	GACNNNNNNGTC	1 cut(s)	940
EaeI	YGGCCR	1 cut(s)	758
Eam1104I	CTCTTC	2 cut(s)	584, 1087
EarI	CTCTTC	2 cut(s)	584, 1087
Eco130I	CCWWGG	4 cut(s)	711, 761, 999, 1030
Eco31I	GGTCTC	1 cut(s)	1056
Eco47I	GGWCC	2 cut(s)	458, 817
Eco57I	CTGAAG	2 cut(s)	252, 321
EcoRII	CCWGG	1 cut(s)	33
EcoT14I	CCWWGG	4 cut(s)	711, 761, 999, 1030
EcoT22I	ATGCAT	1 cut(s)	161
ErhI	CCWWGG	4 cut(s)	711, 761, 999, 1030
Esp3I	CGTCTC	1 cut(s)	959
FaeI	CATG	3 cut(s)	159, 765, 867
FaqI	GGGAC	1 cut(s)	638
FatI	CATG	3 cut(s)	155, 761, 863
Fnu4HI	GCNGC	3 cut(s)	109, 777, 921
Fsp4HI	GCNGC	3 cut(s)	109, 777, 921
FspBI	CTAG	2 cut(s)	473, 1031
FspI	TGCGCA	1 cut(s)	506
GlaI	GCGC	3 cut(s)	506, 924, 961
GluI	GCNGC	3 cut(s)	109, 777, 921
GsaI	CCCAGC	1 cut(s)	674
HaeII	RGCGCY	1 cut(s)	963
HaeIII	GGCC	3 cut(s)	760, 771, 868
HapII	CCGG	1 cut(s)	359
HhaI	GCGC	3 cut(s)	507, 925, 962
Hin1II	CATG	3 cut(s)	159, 765, 867
Hin6I	GCGC	3 cut(s)	505, 923, 960
HinP1I	GCGC	3 cut(s)	505, 923, 960
HincII	GTYRAC	2 cut(s)	128, 543
HindII	GTYRAC	2 cut(s)	128, 543
HinfI	GANTC	2 cut(s)	533, 693
HpaII	CCGG	1 cut(s)	359
HphI	GGTGA	4 cut(s)	278, 751, 849, 943
Hpy166II	GTNNAC	3 cut(s)	98, 128, 543
Hpy188I	TCNGA	3 cut(s)	301, 612, 956
Hpy188III	TCNNGA	1 cut(s)	422
Hpy8I	GTNNAC	3 cut(s)	98, 128, 543
HpyAV	CCTTC	4 cut(s)	299, 324, 870, 1031
HpyCH4IV	ACGT	1 cut(s)	118
HpyCH4V	TGCA	7 cut(s)	108, 159, 596, 776, 827, 904, 1044
HpyF10VI	GCNNNNNNNGC	2 cut(s)	782, 791
HpyF3I	CTNAG	4 cut(s)	134, 678, 719, 963
HpySE526I	ACGT	1 cut(s)	118
Hsp92II	CATG	3 cut(s)	159, 765, 867
HspAI	GCGC	3 cut(s)	505, 923, 960
Kzo9I	GATC	2 cut(s)	195, 235
LmnI	GCTCC	2 cut(s)	274, 799
Lsp1109I	GCAGC	3 cut(s)	120, 788, 932
LweI	GCATC	2 cut(s)	256, 913
MaeI	CTAG	2 cut(s)	473, 1031
MaeII	ACGT	1 cut(s)	118
MaeIII	GTNAC	6 cut(s)	206, 240, 659, 739, 855, 931
MalI	GATC	2 cut(s)	197, 237
MboI	GATC	2 cut(s)	195, 235
MflI	RGATCY	1 cut(s)	195
MhlI	GDGCHC	1 cut(s)	1007
MlsI	TGGCCA	1 cut(s)	760
MluCI	AATT	5 cut(s)	151, 295, 644, 729, 821
MluNI	TGGCCA	1 cut(s)	760
MnlI	CCTC	7 cut(s)	452, 502, 523, 621, 685, 950, 1065
Mox20I	TGGCCA	1 cut(s)	760
Mph1103I	ATGCAT	1 cut(s)	161
MscI	TGGCCA	1 cut(s)	760
MseI	TTAA	3 cut(s)	9, 365, 1105
MslI	CAYNNNNRTG	2 cut(s)	339, 862
Msp20I	TGGCCA	1 cut(s)	760
MspA1I	CMGCKG	3 cut(s)	133, 464, 635
MspI	CCGG	1 cut(s)	359
MspR9I	CCNGG	2 cut(s)	35, 360
MvaI	CCWGG	1 cut(s)	35
MwoI	GCNNNNNNNGC	2 cut(s)	782, 791
NciI	CCSGG	1 cut(s)	360
NcoI	CCATGG	1 cut(s)	761
NdeII	GATC	2 cut(s)	195, 235
NlaIII	CATG	3 cut(s)	159, 765, 867
NlaIV	GGNNCC	3 cut(s)	76, 197, 431
NmuCI	GTSAC	5 cut(s)	206, 240, 739, 855, 931
NsbI	TGCGCA	1 cut(s)	506
NsiI	ATGCAT	1 cut(s)	161
PfeI	GAWTC	2 cut(s)	533, 693
PflMI	CCANNNNNTGG	1 cut(s)	767
PkrI	GCNGC	3 cut(s)	110, 778, 922
PsiI	TTATAA	2 cut(s)	378, 728
Psp6I	CCWGG	1 cut(s)	33
PspFI	CCCAGC	1 cut(s)	670
PspGI	CCWGG	1 cut(s)	33
PspN4I	GGNNCC	3 cut(s)	76, 197, 431
PspPI	GGNCC	3 cut(s)	458, 770, 817
PstI	CTGCAG	2 cut(s)	110, 778
PstNI	CAGNNNCTG	1 cut(s)	782
PsuI	RGATCY	1 cut(s)	195
PvuII	CAGCTG	3 cut(s)	133, 464, 635
RsaI	GTAC	5 cut(s)	99, 104, 346, 717, 839
RsaNI	GTAC	5 cut(s)	98, 103, 345, 716, 838
RseI	CAYNNNNRTG	2 cut(s)	339, 862
SaqAI	TTAA	3 cut(s)	9, 365, 1105
SatI	GCNGC	3 cut(s)	109, 777, 921
Sau3AI	GATC	2 cut(s)	195, 235
Sau96I	GGNCC	3 cut(s)	458, 770, 817
ScrFI	CCNGG	2 cut(s)	35, 360
SduI	GDGCHC	1 cut(s)	1007
SfaNI	GCATC	2 cut(s)	256, 913
SfcI	CTRYAG	4 cut(s)	106, 583, 774, 895
SinI	GGWCC	2 cut(s)	458, 817
SmiMI	CAYNNNNRTG	2 cut(s)	339, 862
SmlI	CTYRAG	1 cut(s)	1057
SmoI	CTYRAG	1 cut(s)	1057
Sse9I	AATT	5 cut(s)	151, 295, 644, 729, 821
SsiI	CCGC	1 cut(s)	974
SspMI	CTAG	2 cut(s)	473, 1031
StyD4I	CCNGG	2 cut(s)	33, 358
StyI	CCWWGG	4 cut(s)	711, 761, 999, 1030
TaiI	ACGT	1 cut(s)	121
TaqI	TCGA	1 cut(s)	172
TasI	AATT	5 cut(s)	151, 295, 644, 729, 821
TfiI	GAWTC	2 cut(s)	533, 693
Tru1I	TTAA	3 cut(s)	9, 365, 1105
Tru9I	TTAA	3 cut(s)	9, 365, 1105
TscAI	CASTG	5 cut(s)	217, 592, 603, 1014, 1096
TseFI	GTSAC	5 cut(s)	206, 240, 739, 855, 931
TseI	GCWGC	3 cut(s)	108, 776, 920
Tsp45I	GTSAC	5 cut(s)	206, 240, 739, 855, 931
TspDTI	ATGAA	5 cut(s)	144, 315, 442, 472, 852
TspGWI	ACGGA	2 cut(s)	375, 584
TspRI	CASTG	5 cut(s)	217, 592, 603, 1014, 1096
Van91I	CCANNNNNTGG	1 cut(s)	767
VpaK11BI	GGWCC	2 cut(s)	458, 817
XcmI	CCANNNNNNNNNTGG	1 cut(s)	119
XmaJI	CCTAGG	1 cut(s)	1030
XspI	CTAG	2 cut(s)	473, 1031
Zsp2I	ATGCAT	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.