Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0009561

Physical Location & Seq

Genomic Coordinates Forward (+)

19813455 .. 19816859

Gene Structure 3405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g15250.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGACGCTTAAATGTGGTTCTTCGTTTTCTTGCTTGGCCACTTCTCCTGCTTCCCATTGCCAAACGAGAAGGGGTTCCCAGTTGAGCTTATTGCATGTACCGTACTGCAGCCAACGATGTGGTGCTCAGCAGCTAAGATATGTTAAAGGTAATTCATGTGTGTTCAGACATCAAATAGGGCAGGCAAGCAAAAGGATTCCAAACAGTCACAGTGTTCTCTTTGCTGTTGCTGAAGACCAGTCAGAATATAGTGATATAAAACCAGATGCTACGGAGCTAGAAAATCACCGTCCTGATTCTGAAGATATATTTCCTTCTAACAGTTCATATATCCATTTTGATGGTACTGGTGGAAAACCAGGTTTAGTCTCATTTTATAACCGTCCATATAAAAAGGAAGAAGAAGTTTCTACAAATAATCCAGAAAGGAACCAAAACAGCCTCTTATGGTTCATCGGTCCAGCTGTTCTCCTAGCTTCTTTCATTTTCCCCTCACTCTGTCTGCGCAAAATACTATCTACTATATTTGAGGATTCATTGTTGACAGATTTTCTCATCTTGTTCTTCACGGAAGCTCTCTTCTACAGTGGTGTTGCGGTGTTTCTTCTTCTGATTGACCGTTTAAGGAGGACAACTGAACCAGAATTGATTGTCCCCAGTAACAGAACCCCAGCCCCTCAATTAGGACAGCGAATCTCGTCTGTTGCTTCCTTGGTACTCAGTCTTATAATTCCTATGGTGACTATGGGTTATGTTTGGCCATGGACTGGCCCTGCAGCTTCTGCTACTCTTGCTCCGTATCTGGTTGGTATAGTGGTCCAATTTGCATTTGAGCAGTATGCAAGATATAAGAAGTCACCTTCGTGGCCTGTTATCCCAGTCATCTTTCAAGTCTATAGATTGCATCAACTGAATAGAGCAGCGCAACTGGTGACTGCTCTGTCCTTTACAGTCAGAGGAGCTGAGACGACACCGCACAACTTGGCAATAAACAGTTCCTTGGGTACACTGTTGAATGTCCTTCAATGCCTTGGAGTTATCTGCATTTGGTCTCTCTCAAGTTTCCTTATGAGGTTCTTCTCTTCCACCACCACTAATCCACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

369

Amino Acids

40.94

Weight (kDa)

8.83

Isoelectric Point (pI)

43.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009561)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63040 AT5G63040
fragaria_vesca	FvH4_5g05620 FvH4_5g05620 FvH4_5g05620 FvH4_5g05620 FvH4_5g05620
malus_domestica	MD06G1171000.v1.1 MD14G1176700.v1.1
prunus_persica	Prupe.5G170600_v2.0.a1
pyrus_communis	pycom06g15250 pycom14g14760
rosa_chinensis	RchiOBHm_Chr7g0193191
rosa_laevigata	RLG00000004288
rosa_multiflora	Rmu_ssc0000092.1_g000028
rosa_roxburghii	Rroxscaffold_3G00262300
rosa_rugosa	Rorug07G0008200
rosa_samantha	Rh7AG133600 Rh7BG134600 Rh7CG137500 Rh7DG135600
rosa_wichuraiana	Rw7G011420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	378, 728
AasI	GACNNNNNNGTC	1 cut(s)	940
Acc16I	TGCGCA	1 cut(s)	506
AccB7I	CCANNNNNTGG	1 cut(s)	767
AciI	CCGC	2 cut(s)	596, 974
AcoI	YGGCCR	2 cut(s)	36, 758
AcuI	CTGAAG	2 cut(s)	252, 321
AfaI	GTAC	5 cut(s)	99, 104, 346, 717, 1006
AfiI	CCNNNNNNNGG	2 cut(s)	683, 767
AgsI	TTSAA	3 cut(s)	890, 1015, 1025
AjnI	CCWGG	1 cut(s)	358
AleI	CACNNNNGTG	1 cut(s)	862
AluBI	AGCT	8 cut(s)	87, 133, 277, 464, 476, 575, 779, 962
AluI	AGCT	8 cut(s)	87, 133, 277, 464, 476, 575, 779, 962
Alw21I	GWGCWC	1 cut(s)	127
Alw26I	GTCTC	3 cut(s)	373, 959, 1056
AlwNI	CAGNNNCTG	1 cut(s)	782
AoxI	GGCC	4 cut(s)	36, 758, 769, 866
ApeKI	GCWGC	4 cut(s)	108, 130, 776, 920
Asp700I	GAANNNNTTC	1 cut(s)	73
AspLEI	GCGC	2 cut(s)	507, 925
AspS9I	GGNCC	3 cut(s)	458, 770, 817
AsuHPI	GGTGA	4 cut(s)	278, 751, 849, 943
AvaII	GGWCC	2 cut(s)	458, 817
BalI	TGGCCA	2 cut(s)	38, 760
BbsI	GAAGAC	1 cut(s)	240
Bbv12I	GWGCWC	1 cut(s)	127
BbvI	GCAGC	4 cut(s)	120, 142, 788, 932
BccI	CCATC	1 cut(s)	335
BciT130I	CCWGG	1 cut(s)	360
BcoDI	GTCTC	3 cut(s)	373, 959, 1056
BfaI	CTAG	2 cut(s)	278, 473
BfmI	CTRYAG	4 cut(s)	106, 583, 774, 895
BisI	GCNGC	4 cut(s)	109, 131, 777, 921
BlpI	GCTNAGC	1 cut(s)	126
BlsI	GCNGC	4 cut(s)	110, 132, 778, 922
Bme1390I	CCNGG	1 cut(s)	360
Bme18I	GGWCC	2 cut(s)	458, 817
BmgT120I	GGNCC	3 cut(s)	458, 770, 817
BmiI	GGNNCC	2 cut(s)	76, 431
BmrFI	CCNGG	1 cut(s)	360
BmrI	ACTGGG	3 cut(s)	73, 651, 872
BmsI	GCATC	2 cut(s)	256, 913
BmuI	ACTGGG	3 cut(s)	73, 651, 872
BpiI	GAAGAC	1 cut(s)	240
Bpu1102I	GCTNAGC	1 cut(s)	126
BpuEI	CTTGAG	1 cut(s)	1042
BsaI	GGTCTC	1 cut(s)	1056
BsaJI	CCNNGG	4 cut(s)	711, 761, 999, 1030
BsaXI	ACNNNNNCTCC	2 cut(s)	778, 808
Bsc4I	CCNNNNNNNGG	2 cut(s)	683, 767
Bse1I	ACTGG	7 cut(s)	79, 238, 352, 657, 772, 878, 933
Bse3DI	GCAATG	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	360
BseDI	CCNNGG	4 cut(s)	711, 761, 999, 1030
BseLI	CCNNNNNNNGG	2 cut(s)	683, 767
BseMI	GCAATG	1 cut(s)	55
BseMII	CTCAG	3 cut(s)	140, 733, 954
BseNI	ACTGG	7 cut(s)	79, 238, 352, 657, 772, 878, 933
BseRI	GAGGAG	1 cut(s)	972
BseXI	GCAGC	4 cut(s)	120, 142, 788, 932
BseYI	CCCAGC	1 cut(s)	670
BshFI	GGCC	4 cut(s)	38, 760, 771, 868
BsiHKAI	GWGCWC	1 cut(s)	127
BslFI	GGGAC	1 cut(s)	638
BslI	CCNNNNNNNGG	2 cut(s)	683, 767
BsmAI	GTCTC	3 cut(s)	373, 959, 1056
BsmBI	CGTCTC	1 cut(s)	959
BsmFI	GGGAC	1 cut(s)	638
BsnI	GGCC	4 cut(s)	38, 760, 771, 868
Bso31I	GGTCTC	1 cut(s)	1056
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp1720I	GCTNAGC	1 cut(s)	126
Bsp19I	CCATGG	1 cut(s)	761
BspACI	CCGC	2 cut(s)	596, 974
BspANI	GGCC	4 cut(s)	38, 760, 771, 868
BspCNI	CTCAG	3 cut(s)	139, 732, 955
BspLI	GGNNCC	2 cut(s)	76, 431
BspMAI	CTGCAG	2 cut(s)	110, 778
BspTNI	GGTCTC	1 cut(s)	1056
BsrDI	GCAATG	1 cut(s)	55
BsrI	ACTGG	7 cut(s)	79, 238, 352, 657, 772, 878, 933
BssECI	CCNNGG	4 cut(s)	711, 761, 999, 1030
BssT1I	CCWWGG	4 cut(s)	711, 761, 999, 1030
Bst2UI	CCWGG	1 cut(s)	360
Bst6I	CTCTTC	2 cut(s)	584, 1087
BstAPI	GCANNNNNTGC	1 cut(s)	782
BstC8I	GCNNGC	2 cut(s)	183, 187
BstDEI	CTNAG	4 cut(s)	126, 134, 719, 963
BstDSI	CCRYGG	1 cut(s)	761
BstENI	CCTNNNNNAGG	1 cut(s)	681
BstHHI	GCGC	2 cut(s)	507, 925
BstMAI	GTCTC	3 cut(s)	373, 959, 1056
BstMWI	GCNNNNNNNGC	2 cut(s)	782, 791
BstNI	CCWGG	1 cut(s)	360
BstNSI	RCATGY	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	358
BstSFI	CTRYAG	4 cut(s)	106, 583, 774, 895
BstV1I	GCAGC	4 cut(s)	120, 142, 788, 932
BstV2I	GAAGAC	1 cut(s)	240
BstXI	CCANNNNNNTGG	2 cut(s)	119, 341
BsuRI	GGCC	4 cut(s)	38, 760, 771, 868
BtgI	CCRYGG	1 cut(s)	761
BtsIMutI	CAGTG	3 cut(s)	217, 592, 1007
Cac8I	GCNNGC	2 cut(s)	183, 187
CaiI	CAGNNNCTG	1 cut(s)	782
CfoI	GCGC	2 cut(s)	507, 925
Cfr13I	GGNCC	3 cut(s)	458, 770, 817
CseI	GACGC	1 cut(s)	13
CsiI	ACCWGGT	1 cut(s)	358
Csp6I	GTAC	5 cut(s)	98, 103, 345, 716, 1005
CviAII	CATG	3 cut(s)	95, 156, 762
CviQI	GTAC	5 cut(s)	98, 103, 345, 716, 1005
DdeI	CTNAG	4 cut(s)	126, 134, 719, 963
DrdI	GACNNNNNNGTC	1 cut(s)	940
DseDI	GACNNNNNNGTC	1 cut(s)	940
EaeI	YGGCCR	2 cut(s)	36, 758
Eam1104I	CTCTTC	2 cut(s)	584, 1087
EarI	CTCTTC	2 cut(s)	584, 1087
Eco130I	CCWWGG	4 cut(s)	711, 761, 999, 1030
Eco31I	GGTCTC	1 cut(s)	1056
Eco47I	GGWCC	2 cut(s)	458, 817
Eco57I	CTGAAG	2 cut(s)	252, 321
EcoNI	CCTNNNNNAGG	1 cut(s)	681
EcoRII	CCWGG	1 cut(s)	358
EcoT14I	CCWWGG	4 cut(s)	711, 761, 999, 1030
ErhI	CCWWGG	4 cut(s)	711, 761, 999, 1030
Esp3I	CGTCTC	1 cut(s)	959
FaeI	CATG	3 cut(s)	98, 159, 765
FaqI	GGGAC	1 cut(s)	638
FatI	CATG	3 cut(s)	94, 155, 761
Fnu4HI	GCNGC	4 cut(s)	109, 131, 777, 921
Fsp4HI	GCNGC	4 cut(s)	109, 131, 777, 921
FspBI	CTAG	2 cut(s)	278, 473
FspI	TGCGCA	1 cut(s)	506
GlaI	GCGC	2 cut(s)	506, 924
GluI	GCNGC	4 cut(s)	109, 131, 777, 921
GsaI	CCCAGC	1 cut(s)	674
HaeIII	GGCC	4 cut(s)	38, 760, 771, 868
HgaI	GACGC	1 cut(s)	13
HhaI	GCGC	2 cut(s)	507, 925
Hin1II	CATG	3 cut(s)	98, 159, 765
Hin6I	GCGC	2 cut(s)	505, 923
HinP1I	GCGC	2 cut(s)	505, 923
HincII	GTYRAC	1 cut(s)	543
HindII	GTYRAC	1 cut(s)	543
HinfI	GANTC	4 cut(s)	196, 296, 533, 693
HphI	GGTGA	4 cut(s)	278, 751, 849, 943
Hpy166II	GTNNAC	2 cut(s)	543, 1007
Hpy188I	TCNGA	5 cut(s)	167, 244, 301, 612, 956
Hpy188III	TCNNGA	2 cut(s)	293, 422
Hpy8I	GTNNAC	2 cut(s)	543, 1007
HpyAV	CCTTC	4 cut(s)	63, 324, 870, 1031
HpyCH4V	TGCA	7 cut(s)	94, 108, 776, 827, 842, 904, 1044
HpyF10VI	GCNNNNNNNGC	2 cut(s)	782, 791
HpyF3I	CTNAG	4 cut(s)	126, 134, 719, 963
Hsp92II	CATG	3 cut(s)	98, 159, 765
HspAI	GCGC	2 cut(s)	505, 923
LmnI	GCTCC	3 cut(s)	274, 799, 959
Lsp1109I	GCAGC	4 cut(s)	120, 142, 788, 932
LweI	GCATC	2 cut(s)	256, 913
MabI	ACCWGGT	1 cut(s)	358
MaeI	CTAG	2 cut(s)	278, 473
MaeIII	GTNAC	5 cut(s)	206, 659, 739, 855, 931
MhlI	GDGCHC	1 cut(s)	127
MlsI	TGGCCA	2 cut(s)	38, 760
MluCI	AATT	5 cut(s)	151, 644, 680, 729, 821
MluNI	TGGCCA	2 cut(s)	38, 760
MnlI	CCTC	7 cut(s)	452, 502, 523, 621, 687, 950, 1065
Mox20I	TGGCCA	2 cut(s)	38, 760
MroXI	GAANNNNTTC	1 cut(s)	73
MscI	TGGCCA	2 cut(s)	38, 760
MseI	TTAA	3 cut(s)	9, 144, 623
MslI	CAYNNNNRTG	2 cut(s)	339, 862
Msp20I	TGGCCA	2 cut(s)	38, 760
MspA1I	CMGCKG	1 cut(s)	464
MspR9I	CCNGG	1 cut(s)	360
MvaI	CCWGG	1 cut(s)	360
MwoI	GCNNNNNNNGC	2 cut(s)	782, 791
NcoI	CCATGG	1 cut(s)	761
NlaIII	CATG	3 cut(s)	98, 159, 765
NlaIV	GGNNCC	2 cut(s)	76, 431
NmuCI	GTSAC	4 cut(s)	206, 739, 855, 931
NsbI	TGCGCA	1 cut(s)	506
NspI	RCATGY	1 cut(s)	98
OliI	CACNNNNGTG	1 cut(s)	862
PdmI	GAANNNNTTC	1 cut(s)	73
PfeI	GAWTC	4 cut(s)	196, 296, 533, 693
PflMI	CCANNNNNTGG	1 cut(s)	767
PkrI	GCNGC	4 cut(s)	110, 132, 778, 922
PsiI	TTATAA	2 cut(s)	378, 728
Psp6I	CCWGG	1 cut(s)	358
PspFI	CCCAGC	1 cut(s)	670
PspGI	CCWGG	1 cut(s)	358
PspN4I	GGNNCC	2 cut(s)	76, 431
PspPI	GGNCC	3 cut(s)	458, 770, 817
PstI	CTGCAG	2 cut(s)	110, 778
PstNI	CAGNNNCTG	1 cut(s)	782
PvuII	CAGCTG	1 cut(s)	464
RsaI	GTAC	5 cut(s)	99, 104, 346, 717, 1006
RsaNI	GTAC	5 cut(s)	98, 103, 345, 716, 1005
RseI	CAYNNNNRTG	2 cut(s)	339, 862
SaqAI	TTAA	3 cut(s)	9, 144, 623
SatI	GCNGC	4 cut(s)	109, 131, 777, 921
Sau96I	GGNCC	3 cut(s)	458, 770, 817
ScrFI	CCNGG	1 cut(s)	360
SduI	GDGCHC	1 cut(s)	127
SexAI	ACCWGGT	1 cut(s)	358
SfaNI	GCATC	2 cut(s)	256, 913
SfcI	CTRYAG	4 cut(s)	106, 583, 774, 895
SinI	GGWCC	2 cut(s)	458, 817
SmiMI	CAYNNNNRTG	2 cut(s)	339, 862
SmlI	CTYRAG	1 cut(s)	1057
SmoI	CTYRAG	1 cut(s)	1057
Sse9I	AATT	5 cut(s)	151, 644, 680, 729, 821
SsiI	CCGC	2 cut(s)	596, 974
SspMI	CTAG	2 cut(s)	278, 473
StyD4I	CCNGG	1 cut(s)	358
StyI	CCWWGG	4 cut(s)	711, 761, 999, 1030
TaqII	GACCGA	1 cut(s)	446
TasI	AATT	5 cut(s)	151, 644, 680, 729, 821
TfiI	GAWTC	4 cut(s)	196, 296, 533, 693
Tru1I	TTAA	3 cut(s)	9, 144, 623
Tru9I	TTAA	3 cut(s)	9, 144, 623
TscAI	CASTG	3 cut(s)	217, 592, 1014
TseFI	GTSAC	4 cut(s)	206, 739, 855, 931
TseI	GCWGC	4 cut(s)	108, 130, 776, 920
Tsp45I	GTSAC	4 cut(s)	206, 739, 855, 931
TspDTI	ATGAA	5 cut(s)	144, 315, 442, 472, 525
TspGWI	ACGGA	3 cut(s)	287, 584, 786
TspRI	CASTG	3 cut(s)	217, 592, 1014
Van91I	CCANNNNNTGG	1 cut(s)	767
VpaK11BI	GGWCC	2 cut(s)	458, 817
XagI	CCTNNNNNAGG	1 cut(s)	681
XceI	RCATGY	1 cut(s)	98
XmnI	GAANNNNTTC	1 cut(s)	73
XspI	CTAG	2 cut(s)	278, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.